View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5370-Insertion-1 (Length: 170)
Name: NF5370-Insertion-1
Description: NF5370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5370-Insertion-1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 1e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 1e-82
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 25601878 - 25602040
Alignment:
| Q |
8 |
agctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattccc |
107 |
Q |
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| T |
25601878 |
agctcagcttcattgaatgctcttgatcttgactgtgatggtaacatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattccc |
25601977 |
T |
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| Q |
108 |
aactccacgaattaggagtctatgttaggggtgataatgatctcattctccaatgtgtttctt |
170 |
Q |
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| T |
25601978 |
aactccacgaattaggagtctatgttaggggtgatagtgatctcattctccaatgtgtttctt |
25602040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 43 - 170
Target Start/End: Original strand, 25597117 - 25597244
Alignment:
| Q |
43 |
tgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactccacgaattaggagtctatgttaggggtgat |
142 |
Q |
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| T |
25597117 |
tgatggtaatatcccgtctgaactcctcaaaaagatattagactatgtttcttctcataattcccaccttcgggaattaggaatctctgttaggggtgat |
25597216 |
T |
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| Q |
143 |
aatgatctcattctccaatgtgtttctt |
170 |
Q |
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| T |
25597217 |
agtggtctcattcttcattgtgtttctt |
25597244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 4e-18; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 36636843 - 36636745
Alignment:
| Q |
26 |
gctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactccacgaattagga |
124 |
Q |
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| T |
36636843 |
gctcttgatcttgaccgtcatggtaacattgagcctcaactccttaaaaagattttaaactatgtttcctcccataatacccacctccaggatttagga |
36636745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 36613268 - 36613165
Alignment:
| Q |
11 |
tcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaac |
110 |
Q |
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| T |
36613268 |
tcagctgcattggatgcccttgattttgactgtagaggtaatattgagcctcgaatccttaaaaagattttgaattatgtttcctcagataatacccacc |
36613169 |
T |
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| Q |
111 |
tcca |
114 |
Q |
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|||| |
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| T |
36613168 |
tcca |
36613165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 36643505 - 36643440
Alignment:
| Q |
59 |
cctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactccacgaattagga |
124 |
Q |
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| T |
36643505 |
cctcaactccttaaaaagattttaaattatatttgctcccataatacccacctccacgaattagga |
36643440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 36909764 - 36909831
Alignment:
| Q |
57 |
agcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactccacgaattagga |
124 |
Q |
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| T |
36909764 |
agcctcaactccttaaaaagattttaaactatgttacttcccataatacccacctccatgaattagga |
36909831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 36629520 - 36629579
Alignment:
| Q |
73 |
aaagattttaaagtatgtttcctctcataattcccaactccacgaattaggagtctatgt |
132 |
Q |
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| T |
36629520 |
aaagattttaaactatgtttcctcccataatgaccacctccatgaattagggatctatgt |
36629579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 19658249 - 19658151
Alignment:
| Q |
16 |
ttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactcca |
114 |
Q |
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| T |
19658249 |
ttcattgcacgcccttgatcttgaccgtcatggtcatattgagcctcgaatccttaaaaagattttagattatgtttgctcacataatacccacctcca |
19658151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 19675088 - 19674990
Alignment:
| Q |
16 |
ttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactcca |
114 |
Q |
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| T |
19675088 |
ttcattgcacgcccttgatcttgaccgtcatggtcatattgagcctcgaatccttaaaaagattttagattatgtttgctcacataatacccacctcca |
19674990 |
T |
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