View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5370-Insertion-2 (Length: 1074)
Name: NF5370-Insertion-2
Description: NF5370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5370-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 394
Target Start/End: Original strand, 28587751 - 28588141
Alignment:
| Q |
8 |
tactccacccgaagttatccaacttgaaacacaacgttaaatataaacacttttcacaaccaaactttgtatgtcaacatgcaagatttttacttatagt |
107 |
Q |
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| T |
28587751 |
tactccacctgaagttatccaacttgaaacacaacgttaagtataaacacttttcacaaccaaactttgtttgtcaacatgcaagatttttacttatagt |
28587850 |
T |
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| Q |
108 |
aatatagtaataatatgtagaataagtttccctaaaaattaaatgtagaatcaagttgtaccnnnnnnnnnnnnnnnnnnnnntgtggatacaagaagga |
207 |
Q |
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| T |
28587851 |
aatatagtaataatatgtacaataagtttccctaaaaattaaatgtagaatcaagttgtac---aagaagaaaaaaaaaaatatgtggatacaagaagga |
28587947 |
T |
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| Q |
208 |
cgcataaaatacatcagagttaatacaataacaatatg-------atgaattggacataattttaatttttaacacgtcttaaacataaaagagtcataa |
300 |
Q |
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| T |
28587948 |
cgcataaaatacatcagagttaatacaataacaatatgaacatacatgaattagacataattttaatttttaacacgtcttaaacataaaagagtcataa |
28588047 |
T |
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| Q |
301 |
ctttaacgaaaatataaacataaacttaccattagggtccaaaaatgaataaaaaattggaaggtggaaacatcccacttttatttttagggac |
394 |
Q |
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| T |
28588048 |
ctttaacgaaaatataaacataaacttaccattagggtccaaaaatgaataaaaaattggaaggtggaaacatcccacatttatttttagggac |
28588141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 828 - 1070
Target Start/End: Original strand, 28589041 - 28589287
Alignment:
| Q |
828 |
agttcatatgaatcatatcattttggaaatagacctaacataaaataaaatggtagaccaacattattttattcaataagaaaaccaatgtcgaaaagag |
927 |
Q |
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| T |
28589041 |
agttcatatgaatcatatcattttggaaatagacctaacataaaataaaatggtggaccaacattattttattcaataagaaaacgaatgttgaaaagag |
28589140 |
T |
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| Q |
928 |
attgataaaataagtgttcctagcactactcttttcggtattaaggaagacattctctggtatttacattttatactcacattg-tgaacatcctatcaa |
1026 |
Q |
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| T |
28589141 |
attgataaaataagtgttcctagcactactcttttcattattaaggaagacattctctggtatttacattttatactcacattgttgaacatcctatcaa |
28589240 |
T |
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| Q |
1027 |
ataaactctacgtattaag-atcaaat-aatatat-gatttctgtaa |
1070 |
Q |
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| T |
28589241 |
ataaactctacgtattaagaatcaaataaatatatggatttctgtaa |
28589287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 506 - 627
Target Start/End: Original strand, 28588253 - 28588377
Alignment:
| Q |
506 |
ggtccttctaaaaacattatttttacatctagtcct---aaaaatatcaactttttgtttttcgcaaattttaaatattctatatattacatagatcaat |
602 |
Q |
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| T |
28588253 |
ggtccttctaaaaacattatttttacatctagtccttctaaaaatatcaactttttgtttttcgcaaaatttaaatattctatatattacatggatcaat |
28588352 |
T |
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| Q |
603 |
tccaatatgaataaatttcacaacg |
627 |
Q |
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| T |
28588353 |
tccaatatgaataaatttcacaacg |
28588377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 700 - 800
Target Start/End: Original strand, 28588946 - 28589040
Alignment:
| Q |
700 |
tagtattaagaaagacaagacggtct--gttattaaagtgttaacaattgttcttcaaaaaataaatatgaggagtgtccgaaacactcactttaaaact |
797 |
Q |
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| T |
28588946 |
tagtattaaggaagacaagacggtctatgttattaaagtgttaacaattgtttttc--------aatatgaggtgtgtctgaaacactcactttaaaact |
28589037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 575 - 617
Target Start/End: Original strand, 29620097 - 29620139
Alignment:
| Q |
575 |
aaatattctatatattacatagatcaattccaatatgaataaa |
617 |
Q |
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| T |
29620097 |
aaatattctacatattagagagatcaattccaatatgaataaa |
29620139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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