View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5370-Insertion-3 (Length: 1045)

Name: NF5370-Insertion-3
Description: NF5370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5370-Insertion-3
NF5370-Insertion-3
[»] chr3 (19 HSPs)
chr3 (8-1040)||(18871064-18872096)
chr3 (56-258)||(19395053-19395254)
chr3 (335-509)||(19395361-19395541)
chr3 (278-406)||(19383023-19383149)
chr3 (34-102)||(19466064-19466132)
chr3 (289-376)||(18105939-18106027)
chr3 (92-197)||(19382885-19382989)
chr3 (869-984)||(18166934-18167050)
chr3 (749-891)||(19395707-19395841)
chr3 (578-641)||(19383327-19383390)
chr3 (12-57)||(19382692-19382737)
chr3 (56-100)||(19382799-19382843)
chr3 (12-57)||(19394946-19394991)
chr3 (94-161)||(19466247-19466312)
chr3 (13-61)||(24493086-24493134)
chr3 (697-727)||(19395672-19395702)
chr3 (700-729)||(14032926-14032955)
chr3 (659-723)||(19402265-19402330)
chr3 (56-97)||(19440063-19440104)
[»] chr5 (1 HSPs)
chr5 (684-729)||(13398352-13398398)
[»] chr8 (2 HSPs)
chr8 (700-738)||(29651646-29651684)
chr8 (700-734)||(31244012-31244046)
[»] chr2 (1 HSPs)
chr2 (702-740)||(22556234-22556272)
[»] chr6 (1 HSPs)
chr6 (702-739)||(29236255-29236292)


Alignment Details
Target: chr3 (Bit Score: 779; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 779; E-Value: 0
Query Start/End: Original strand, 8 - 1040
Target Start/End: Complemental strand, 18872096 - 18871064
Alignment:
Q  8 atcttatgtgattgtaacactgttgattctgaattcatgtttcacttgttgtaagttgttctttgggattgtccacacctcatgtatctctctacatatt 107  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18872096 atcttatgtgattgtaacactgttgcttctgaattcatgtttcacttgttgtaagttgttctttgggattgtccacacctcatgtatctctctacatatt 18871997  T
Q  108 agtttatgcagatggtttaagaataagagtgtttgtgtagaaactttgttgcttccaatatgctttggacattttctctaatcatatgtagcgtttgtat 207  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18871996 agtttatgcagatggtttaagaataagagt--ttgtgtagaaactttgctgcttccaatatgctttggacattttctctaatcatatgtagcgtttgtat 18871899  T
Q  208 aaaaactttgatcccttccttcagctctaaattatgctctaatactagcatatatcaagctatggttttgatcttattcaa-gttcaaattttgagcata 306  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||    
T  18871898 aaaaactttgctcccttccttcagctctaaattatgctctaatactagcatatatcaagctatggtttttatcttattcaaagttcaaattttgagaata 18871799  T
Q  307 tctcatattaagttgactagaacaata-agaacacaattgaaggcatgataaatcagaatctatcttgaaacaaaagcttttcttttgactactatcctc 405  Q
    |||||||| || |||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18871798 tctcatatcaaattgacgggaacaatacagaacacaattgaaggcatgataaatcagaatctatcttgaaacaaaagcttttcttttgactactatcctc 18871699  T
Q  406 aataagtctcagaattactttataatnnnnnnntgtaattcacttttcagaaagaaaatgagattggaacaaattgatggatttaagacagcattgaaat 505  Q
    ||||||||||| ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18871698 aataagtctcacaattactttataataaaaaaatgtaattcacttttcagaaagaaaatgagattggaacaaattgatggatttaagacagcattgaaat 18871599  T
Q  506 gtaattttaacctttgagataaacatgaaaacatgaaatgttatggtttaaactatagactgaaaccttacattacatcgaaatttatattcgtgaagtc 605  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18871598 gtaattttaacctttgagacaaacatgaaaacatgaaatgttatggtttaaactatagactgaaaccttacattacatcgaaatttatatttgtgaagtc 18871499  T
Q  606 aagaaacacaatatcactatgtagaactgaaacataagaaattgaagatgtgtcaatgtccaatatcgacacaaaactaacacatatggctacattaatc 705  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||    
T  18871498 aagaaacacaatatcactatgtaggactgaaacttaagagattgaagatgtgtcaatgtccaatatcgacacaacactaacacatgtgactacattaatc 18871399  T
Q  706 acttctattttcttaaattattactagtgtctacgttttcgtgtgtgtttgtgtcatgtctagtgtatctgtatgtgcctgtgattgatagatatgcctc 805  Q
    |||||||||||||||||||||||| | |||||||||||| |||||| ||||||||||||||  ||||| ||||||||||||||||||| ||||||||| |    
T  18871398 acttctattttcttaaattattacaaatgtctacgttttggtgtgtatttgtgtcatgtcttatgtatatgtatgtgcctgtgattgaaagatatgcccc 18871299  T
Q  806 ttccagtgaagtgaagcagtgctccgatgaaatttatgtatgtgcctgtctggataaatt-aaagaataataattggttcaagtcatgttgcttactgca 904  Q
    |||||||||||||||||||| |||||||||||||||||        |||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  18871298 ttccagtgaagtgaagcagtactccgatgaaatttatg--------tgtctggataaattaaaagaataataattggttcaagtcatgttgcttgctgca 18871207  T
Q  905 ttttatatatcctataatttccaaatcaatcatatcttttccatc-aaagtacatatataatgaactcaag-aggagaaatgaaactca--taaggagta 1000  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||   |||||| |    
T  18871206 ttttatatatcctataatttccaaatcaatcatatcttttccatcaaaagtacatatataatgaactcaagaaggagaaatgaaactcaataaaggagga 18871107  T
Q  1001 taaaatg-aactcacttaaaaat-aga-tttattagacgacaa 1040  Q
    ||||||| ||||||||| ||||| ||| |||||||||||||||    
T  18871106 taaaatgaaactcacttgaaaatcagattttattagacgacaa 18871064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 56 - 258
Target Start/End: Original strand, 19395053 - 19395254
Alignment:
Q  56 ttgtaagttgttctttgggattgtccacacctcatgtatctctctacatattagtttatgcagatggtttaagaataagagtgtttgtgtagaaactttg 155  Q
    ||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||    
T  19395053 ttgtaagttgttctttgggctagtgcacacctcatgtatctctctacatattagtttatgcagatggtttaagaataaga--gtttgtttagaaactttg 19395150  T
Q  156 ttgcttccaatatgctttggacatttt-ctctaatcatatgtagcgtttgtataaaaactttgatcccttccttcagctctaaattatgctctaatacta 254  Q
     |||||||||||||||||| |||||||   |  ||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| |||||||||||    
T  19395151 ctgcttccaatatgctttgcacattttgagcatatcatatgtagtgtttgtataaaaactttgctcccttccttcagctataaattattctctaatacta 19395250  T
Q  255 gcat 258  Q
    ||||    
T  19395251 gcat 19395254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 335 - 509
Target Start/End: Original strand, 19395361 - 19395541
Alignment:
Q  335 gaacacaattgaaggcatgataaatcagaatc--tatcttgaaacaaaagcttttcttttgactactatcc-tcaataagtctcagaattactttata-- 429  Q
    ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||| | || ||||| ||  |||||||||||      
T  19395361 gaacacaattgaaggcatgataaatcagaatctatatcctgaaacaaaagcttttcttttgactactatccttaaagaagtcccaccattactttataat 19395460  T
Q  430 atnnnnnnntgtaattcacttttc-agaaagaaaatgagattggaacaaattgatggatttaagacagcattgaaatgtaa 509  Q
    ||       ||| ||||||||||| | ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  19395461 ataaaaaaatgtgattcacttttcaaaaaagaaaatgagactggaacaaattgatgaatttaagacagcattgaaatgtaa 19395541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 278 - 406
Target Start/End: Original strand, 19383023 - 19383149
Alignment:
Q  278 atcttattcaagttcaaattttgagcatatctcatattaagttgactagaacaataagaacacaattgaaggcatgataaatcagaatctatcttgaaac 377  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||| ||||||       |||||||||| ||||||||||||||||||||||||||||    
T  19383023 atcttattcaagttcactttttgagcatatctcatattaagttgactggaacaa-------acaattgaagtcatgataaatcagaatctatcttgaaac 19383115  T
Q  378 aaaagcttttcttt-----tgactactatcctca 406  Q
    ||||||||||||||     |||||||||||||||    
T  19383116 aaaagcttttctttaattttgactactatcctca 19383149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 19466064 - 19466132
Alignment:
Q  34 ttctgaattcatgtttcacttgttgtaagttgttctttgggattgtccacacctcatgtatctctctac 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19466064 ttctgaattcatgtttcacttgttgtaagttgttctttgggattgtccacacctcatgtatctctctac 19466132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 289 - 376
Target Start/End: Original strand, 18105939 - 18106027
Alignment:
Q  289 gttcaaattttgagcatatctcatattaagttgactagaacaata-agaacacaattgaaggcatgataaatcagaatctatcttgaaa 376  Q
    ||||||| ||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  18105939 gttcaaactttgaacatatctcatattaagttgactggaacaatacagaacacaattgaaggcatgataaatcataatctatcttgaaa 18106027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 92 - 197
Target Start/End: Original strand, 19382885 - 19382989
Alignment:
Q  92 tatctctctacatattagtttatgcag-atggtttaagaataagagtgtttgtgtagaaactttgttgcttccaatatgctttggacattttctctaatc 190  Q
    ||||| || |||||||||||||||||| |||||||||||| | ||||  ||||||||| |||||| ||||||||||||||||||||||||| ||||||||    
T  19382885 tatctatcaacatattagtttatgcaggatggtttaagaacatgagt--ttgtgtagacactttgctgcttccaatatgctttggacatttgctctaatc 19382982  T
Q  191 atatgta 197  Q
    |||||||    
T  19382983 atatgta 19382989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 869 - 984
Target Start/End: Original strand, 18166934 - 18167050
Alignment:
Q  869 gaataataattggttcaagtcatgttgcttactgcattttatatatcctataatttccaaatcaatcatatcttttccatc-aaagtacatatataatga 967  Q
    ||||||||| |||||||||||||  ||||| |||||||||||||||| | ||||| | |||| || ||||||| ||||||| |||||||| |||||||||    
T  18166934 gaataataaatggttcaagtcattctgcttgctgcattttatatatcttgtaattacaaaat-aagcatatctgttccatcaaaagtacaaatataatga 18167032  T
Q  968 actcaag-aggagaaatg 984  Q
    ||||||| ||||||||||    
T  18167033 actcaagcaggagaaatg 18167050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 749 - 891
Target Start/End: Original strand, 19395707 - 19395841
Alignment:
Q  749 tgtgtttgtgtcatgtctagtgtatctgtatgtgcctgtgattgatagatatgcctcttccagtgaagtgaagcagtgctccgatgaaatttatgtatgt 848  Q
    ||||| |||||||| ||| |||| |  ||||||| | ||||||||||| |||  | ||||||||||||||||||| | |||||||||||||||||         
T  19395707 tgtgtctgtgtcatatcttgtgtctaagtatgtgtcagtgattgatagttatatcgcttccagtgaagtgaagcactactccgatgaaatttatg----- 19395801  T
Q  849 gcctgtctggataaattaaagaataataattggttcaagtcat 891  Q
       ||||||||||||||| |||||||| |||||||||||||||    
T  19395802 ---tgtctggataaattatagaataattattggttcaagtcat 19395841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 578 - 641
Target Start/End: Original strand, 19383327 - 19383390
Alignment:
Q  578 ttacatcgaaatttatattcgtgaagtcaagaaacacaatatcactatgtagaactgaaacata 641  Q
    |||||||||||||||||||  |||||| ||||||||||||||| ||||||||||| ||||||||    
T  19383327 ttacatcgaaatttatatttttgaagttaagaaacacaatatcgctatgtagaaccgaaacata 19383390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 19382692 - 19382737
Alignment:
Q  12 tatgtgattgtaacactgttgattctgaattcatgtttcacttgtt 57  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||    
T  19382692 tatgtgattgtaatactgttgtttctgaattcatgtttcacttgtt 19382737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 19382799 - 19382843
Alignment:
Q  56 ttgtaagttgttctttgggattgtccacacctcatgtatctctct 100  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||    
T  19382799 ttgtaagttgttctttgggcttggccacacctcatgtatctctct 19382843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 19394946 - 19394991
Alignment:
Q  12 tatgtgattgtaacactgttgattctgaattcatgtttcacttgtt 57  Q
    ||||||||||||||||||||| ||||||||| ||||||| ||||||    
T  19394946 tatgtgattgtaacactgttgtttctgaatttatgtttcccttgtt 19394991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 19466247 - 19466312
Alignment:
Q  94 tctctctacatattagtttatgcagatggtttaagaataagagtgtttgtgtagaaactttgttgctt 161  Q
    |||||||| ||||||| |||||||||| |||  |||||||||  |||||||||||||||||| |||||    
T  19466247 tctctctatatattaggttatgcagatagttgcagaataaga--gtttgtgtagaaactttgctgctt 19466312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 24493134 - 24493086
Alignment:
Q  13 atgtgattgtaacactgttgattctgaattcatgtttcacttgttgtaa 61  Q
    ||||||||||| || |||||||| ||||||||| |||||||||||||||    
T  24493134 atgtgattgtaccattgttgattttgaattcatctttcacttgttgtaa 24493086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 697 - 727
Target Start/End: Original strand, 19395672 - 19395702
Alignment:
Q  697 acattaatcacttctattttcttaaattatt 727  Q
    |||||||||||||||||||||||||||||||    
T  19395672 acattaatcacttctattttcttaaattatt 19395702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 700 - 729
Target Start/End: Complemental strand, 14032955 - 14032926
Alignment:
Q  700 ttaatcacttctattttcttaaattattac 729  Q
    ||||||||||||||||||||||||||||||    
T  14032955 ttaatcacttctattttcttaaattattac 14032926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 659 - 723
Target Start/End: Original strand, 19402265 - 19402330
Alignment:
Q  659 caatgtccaatatcgacacaaaactaacacatatggctaca-ttaatcacttctattttcttaaat 723  Q
    ||||||||||||||||||||| |   |||| ||||| |||| ||||||||||||||||| ||||||    
T  19402265 caatgtccaatatcgacacaatagagacacttatggttacatttaatcacttctattttattaaat 19402330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 19440063 - 19440104
Alignment:
Q  56 ttgtaagttgttctttgggattgtccacacctcatgtatctc 97  Q
    ||||||| ||||||||||| ||||||||||| ||||||||||    
T  19440063 ttgtaagctgttctttgggcttgtccacaccacatgtatctc 19440104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 684 - 729
Target Start/End: Complemental strand, 13398398 - 13398352
Alignment:
Q  684 aacacatatggctacatt-aatcacttctattttcttaaattattac 729  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  13398398 aacacatatggctacatttaatcacttctattttcttaaattattac 13398352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 700 - 738
Target Start/End: Original strand, 29651646 - 29651684
Alignment:
Q  700 ttaatcacttctattttcttaaattattactagtgtcta 738  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  29651646 ttaatcacttctattttcttaaaatattactagcgtcta 29651684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 700 - 734
Target Start/End: Complemental strand, 31244046 - 31244012
Alignment:
Q  700 ttaatcacttctattttcttaaattattactagtg 734  Q
    |||||||||| ||||||||||||||||||||||||    
T  31244046 ttaatcacttatattttcttaaattattactagtg 31244012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 702 - 740
Target Start/End: Complemental strand, 22556272 - 22556234
Alignment:
Q  702 aatcacttctattttcttaaattattactagtgtctacg 740  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  22556272 aatcacttctattttcttaaattattacctgtgtctacg 22556234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 702 - 739
Target Start/End: Complemental strand, 29236292 - 29236255
Alignment:
Q  702 aatcacttctattttcttaaattattactagtgtctac 739  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  29236292 aatcacttctattttctcaaattattattagtgtctac 29236255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University