View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5370-Insertion-4 (Length: 827)
Name: NF5370-Insertion-4
Description: NF5370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5370-Insertion-4 |
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| [»] chr8 (2 HSPs) |
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| [»] chr3 (4 HSPs) |
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| [»] scaffold0658 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 434 - 827
Target Start/End: Original strand, 15211642 - 15212036
Alignment:
| Q |
434 |
attaggatttctgccaaagtccatctttttaattgtattggctgcaggtgttttcagttcatgatcgattcaaattgttctattctctatgttgttgagc |
533 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15211642 |
attaggatttctgccaaagtccatctttttaattgtattggctgcaggtgttttcagttcatgatcgattcaaattgttctattctctatgttgttgagc |
15211741 |
T |
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| Q |
534 |
tcgttttacacagcttgtgctaagtcccgttggatttaaaaaaataaataaatctgaaagaccaaagatctataaaatttg-nnnnnnnnnnggcnnnnn |
632 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15211742 |
tcgttttacacagcttgtgctaagtcccgttggattttaaaaaataaataaatctgaaagaccaaagatctataaaatttgttttttttttgggcaaaaa |
15211841 |
T |
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| Q |
633 |
nntgacttttaaattaagtgattcgagcaactaaactgaacctaacgagccaaatcgagttgttagtgaactcaaactgagtcgagttcgagctnnnnnn |
732 |
Q |
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| T |
15211842 |
aatgacttttaaattaagtgattcgagcaactaaactgaacctaacgagccgaatcgagttgttagtgaactcaaaccgagtcgagttcgagctaaaaaa |
15211941 |
T |
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| Q |
733 |
nnngttcgtaacgaactcgagccgagtttcgagctaaaccaaatctaattaaatcgagctcaggcaaattcaattcgactcggctcattttcagc |
827 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| || | ||||||| |||||| ||| ||||| |||| |||||||||||| |
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| T |
15211942 |
aaagtttgtaacgaactcgagccgagtttcgagctaaaccaaatcttatggagtcgagcttaggcaagttcgattcggctcgactcattttcagc |
15212036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 15201163 - 15201301
Alignment:
| Q |
8 |
ttattgatctaaaccattctaaaactggaattatattgtagcaacgacaagaagaatattgaaacatatcattcagccaccaggaaaacaagttatgaaa |
107 |
Q |
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| T |
15201163 |
ttattgatctaaaccattctaagactggaatt-----gtagcaacggcaagaagaatattgaaacatatcattcagccaccaggaaaacaagttatgaaa |
15201257 |
T |
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| Q |
108 |
ggtgaaaggaggaagatgatcaaaaagagatttaatcaaaagtg |
151 |
Q |
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| T |
15201258 |
ggtgaaaagaggaagatgatcaaaaagagatttaatcaaaagtg |
15201301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 1e-28; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 635 - 827
Target Start/End: Original strand, 8086873 - 8087065
Alignment:
| Q |
635 |
tgacttttaaattaagtgattcgagcaactaaactgaacctaacgagccaaatcgagttgttagtgaactcaaactgagtcgagttcgagctnnnnnnnn |
734 |
Q |
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|||||||||||||| || |||||||||||| |||||||||||||||||| || ||||||||| | |||||| ||| |||||||||||||||| |
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| T |
8086873 |
tgacttttaaattatgttattcgagcaactgaactgaacctaacgagccgaaccgagttgtttgcgaactcgaaccgagtcgagttcgagctgaaaaata |
8086972 |
T |
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| Q |
735 |
ngttcgtaacgaactcgagccgagtttcgagctaaaccaaatctaattaaatcgagctcaggcaaattcaattcgactcggctcattttcagc |
827 |
Q |
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|||||||||||||| ||| ||||||||||||| ||| |||| | || | |||||||||| || ||||||| ||||| ||||||| |||| |
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| T |
8086973 |
tgttcgtaacgaactagagtcgagtttcgagctgaacaaaattttatcgagtcgagctcagacaggttcaatttgactcatctcatttccagc |
8087065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 433 - 530
Target Start/End: Original strand, 25633471 - 25633570
Alignment:
| Q |
433 |
tattaggatttctgccaaagtccatctttttaatt-gtattggctgcaggtgttttcagttcatgatcgattc-aaattgttctattctctatgttgttg |
530 |
Q |
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||||||||||||| |||||||||||||||| |||| ||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25633471 |
tattaggatttctaccaaagtccatcttttgaatttgtactggctgcaaatgttttcagttcatgatcgattcaaaattgttctattctctatgttgttg |
25633570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 635 - 827
Target Start/End: Original strand, 25633701 - 25633896
Alignment:
| Q |
635 |
tgacttttaaattaagtgattcgagcaactaaactgaacctaacgagccaaatcgagttgttagtgaactcaaactgagtcgagttcgagctnnnnnnnn |
734 |
Q |
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||||||| |||||| |||||||||||||| |||||||||||| ||||| || ||| ||||| | |||||| ||| ||||||||||||||| |
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| T |
25633701 |
tgactttgaaattatgtgattcgagcaaccgaactgaacctaatgagccgaaccgatttgtttgcgaactccaaccaagtcgagttcgagctaagaaata |
25633800 |
T |
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| Q |
735 |
ngttcgtaacgaactcgag---ccgagtttcgagctaaaccaaatctaattaaatcgagctcaggcaaattcaattcgactcggctcattttcagc |
827 |
Q |
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| T |
25633801 |
agttcgtaacgaactagagtactcgagtttcgagcttaaccaaatctcattgagtcgagctcagacaggttcgagtcgattcggctcatttccagc |
25633896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 536 - 614
Target Start/End: Original strand, 25633600 - 25633675
Alignment:
| Q |
536 |
gttttacacagcttgtgctaagtcccgttggatttaaaaaaataaataaatctgaaagaccaaagatctataaaatttg |
614 |
Q |
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|||||||||| ||||||| |||||| ||||||||||||| ||||| |||| |||| ||||||| |||||||||||| |
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| T |
25633600 |
gttttacacaacttgtgccaagtcctcttggatttaaaaa---aaatatatcttaaaggccaaagaactataaaatttg |
25633675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 736 - 774
Target Start/End: Original strand, 19283624 - 19283662
Alignment:
| Q |
736 |
gttcgtaacgaactcgagccgagtttcgagctaaaccaa |
774 |
Q |
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| T |
19283624 |
gttcgtatcgaactcgagtcgagtttcgagctaaaccaa |
19283662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0658 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0658
Description:
Target: scaffold0658; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 786 - 827
Target Start/End: Original strand, 6488 - 6529
Alignment:
| Q |
786 |
tcgagctcaggcaaattcaattcgactcggctcattttcagc |
827 |
Q |
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| T |
6488 |
tcgagctcaggcaggttcaattcgactcgactcattttcagc |
6529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 736 - 813
Target Start/End: Complemental strand, 40675265 - 40675188
Alignment:
| Q |
736 |
gttcgtaacgaactcgagccgagtttcgagctaaaccaaatctaattaaatcgagctcaggcaaattcaattcgactc |
813 |
Q |
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||||||| |||||||||| |||||||||||| |||||| ||| || |||||||||||| ||| ||| | ||||||| |
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| T |
40675265 |
gttcgtatcgaactcgagtcgagtttcgagccgaaccaattcttatcgaatcgagctcagacaagttcgactcgactc |
40675188 |
T |
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