View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5370-Insertion-5 (Length: 529)
Name: NF5370-Insertion-5
Description: NF5370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5370-Insertion-5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 518; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 8 - 529
Target Start/End: Original strand, 47873751 - 47874272
Alignment:
| Q |
8 |
cttccctgttgtgatatattcaggagctatgtaccccatggtcccagctatgattgtggtgtctgattgtgatcctttctcatgatccacaagccttgcc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47873751 |
cttccctgttgtgatatattcaggagctatgtaccccatggtcccagctatgattgtggtgtctgattgtgatcctttctcatgatccacaagccttgcc |
47873850 |
T |
|
| Q |
108 |
aatccgaaatccccaagcttagcattgaaattgttgtctaacatgatgttgctggatttgacatccctatgaagcacacattgttcccattcttcatgaa |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47873851 |
aatccgaaatccccaagcttagcattgaaattgttgtctaacatgatgttgctggatttgacatccctatgaagcacacattgttcccattcttcatgaa |
47873950 |
T |
|
| Q |
208 |
ggtacaaaagtgctgaagccaagtccatagcaatgttgtacctcatttgccatgtcaatacgctttttccgcggtatagatgagaatctaagctaccatt |
307 |
Q |
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| T |
47873951 |
ggtacaaaagtgctgaagccaagtccatagcaatgttgtacctcatttgccatgtcaatacgctttttccgcggtatagatgagaatctaagctaccatt |
47874050 |
T |
|
| Q |
308 |
ttgcatgaactcatatataaggaggaagtcctttttcttgtgacaccaaccaattagttgtactaaattcctatgtctaagctggccaatgatcttcact |
407 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47874051 |
ttgcatgaactcatatataaggaggaagtcccttttcttgtgacaccaaccaattagttgtactaaattcctatgtctaagctggccaatgatcttcact |
47874150 |
T |
|
| Q |
408 |
tcagttgcatattcctttatcccttgtttagactctcttgatattctctttatagcaacattggtatctatatctttcaaatagcctttataaacaccac |
507 |
Q |
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| T |
47874151 |
tcagttgcatattcctttatcccttgtttagactctcttgatattctctttatagcaacattggtatctatatctttcaaatagcctttataaacaccac |
47874250 |
T |
|
| Q |
508 |
caaaaccaccttgccctatctt |
529 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
47874251 |
caaaaccaccttgccctatctt |
47874272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 9 - 529
Target Start/End: Complemental strand, 47871790 - 47871273
Alignment:
| Q |
9 |
ttccctgttgtgatatattcaggagctatgtaccccatggtcccagctatgattgtggtgtctgattgtgatcctttctcatgatccacaagccttgcca |
108 |
Q |
| |
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||||||||||||| ||||||||||||||| |||||||| |||||||||||||| ||||| || ||||||| |||||||||||||||| | ||| |||| |
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| T |
47871790 |
ttccctgttgtgaaatattcaggagctatataccccatagtcccagctatgatcgtggta-ct--ttgtgatactttctcatgatccaccaacctagcca |
47871694 |
T |
|
| Q |
109 |
atccgaaatccccaagcttagcattgaaattgttgtctaacatgatgttgctggatttgacatccctatgaagcacacattgttcccattcttcatgaag |
208 |
Q |
| |
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| || ||||| |||||||| ||||||||| | | ||| ||||| |||||||||||||| | || ||||||| ||||||||||||||||||||||||||| |
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| T |
47871693 |
acccaaaatcaccaagctttgcattgaaactatcgtccaacataatgttgctggattttatgtctctatgaatcacacattgttcccattcttcatgaag |
47871594 |
T |
|
| Q |
209 |
gtacaaaagtgctgaagccaagtccatagcaatgttgtacctcatttgccatgtcaatacgctttttccgcggtatagatgagaatctaagctaccattt |
308 |
Q |
| |
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||||| | ||| |||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| ||||||||||||||||||||| |
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| T |
47871593 |
atacaacaatgccgaagccaaatccatagcaatgttgtacctcacttgccatgtcaatatgctttttccgcgatataggtgagaatctaagctaccattt |
47871494 |
T |
|
| Q |
309 |
tgcatgaactcatatataaggaggaagtcctttttcttgtgacaccaaccaattagttgtactaaattcctatgtctaagctggccaatgatcttcactt |
408 |
Q |
| |
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||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| || ||||| |||| |||||||||||||| |
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| T |
47871493 |
tgcatgaactcgtatataaggaggaagtcttttttcatgtgacaccaaccaattagttgtactaaattcctgtgcctaagttggctaatgatcttcactt |
47871394 |
T |
|
| Q |
409 |
cagttgcatattcctttatcccttgtttagactctcttgatattctctttatagcaacattggtatctatatctttcaaatagcctttataaacaccacc |
508 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
47871393 |
cagttgcatattcctttatcccttgtttagactctcttgatattctctttatagcaacattggaatctatgtctttcaaatagcctttataaacaccacc |
47871294 |
T |
|
| Q |
509 |
aaaaccaccttgccctatctt |
529 |
Q |
| |
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|||||||||||| |||||||| |
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| T |
47871293 |
aaaaccaccttgtcctatctt |
47871273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 12 - 525
Target Start/End: Complemental strand, 36931513 - 36931006
Alignment:
| Q |
12 |
cctgttgtgatatattcaggagctatgtaccccatggtcccagctatgattgtggtgtctgattgtgatcctttctcatgatccacaagccttgccaatc |
111 |
Q |
| |
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|||| ||||| ||||||||| || || || ||| | ||||||||||| |||||||| |||||| || |||||||||| |||||||| || || | |
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| T |
36931513 |
cctgatgtgaaatattcaggtgcaatataaccccttgtcccagctataattgtggt------ttgtgaccccgtctcatgatctacaagcctagctaaac |
36931420 |
T |
|
| Q |
112 |
cgaaatccccaagcttagcattgaaattgttgtctaacatgatgttgctggatttgacatccctatgaagcacacattgttcccattcttcatgaaggta |
211 |
Q |
| |
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| ||||| |||||| |||||||||| || ||||| ||||| |||||||| | ||||| ||||||||||| |||||||||||||| || ||||| |
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| T |
36931419 |
caaaatcaccaagccgagcattgaaacatgaatccaacataatgttactggatttaatgtccctgtgaagcacacactgttcccattcttcctgtaggta |
36931320 |
T |
|
| Q |
212 |
caaaagtgctgaagccaagtccatagcaatgttgtacctcatttgccatgtcaatacgctttttccgcggtatagatgagaatctaagctaccattttgc |
311 |
Q |
| |
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| | ||||||||||||| ||| || || || ||||||||| ||||||||||| ||| ||| | ||||||||||||||||||||| |||||| | |
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| T |
36931319 |
aagcaatgctgaagccaagcccaatgctatattatacctcattgtccatgtcaataagctctttttactgtatagatgagaatctaagcttccatttgac |
36931220 |
T |
|
| Q |
312 |
atgaactcatatataaggaggaagtcctttttcttgtgacaccaaccaattagttgtactaaattcctatgtctaagctggccaatgatcttcacttcag |
411 |
Q |
| |
|
||||||||||||||||| || || || || ||| | || |||||||||| ||||||||||||||||| ||||| | |||| |||| ||||||||||| |
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| T |
36931219 |
atgaactcatatataagaagaaaatcattcttcctatggcaccaaccaagaagttgtactaaattcctgtgtctcaattggcttatgaccttcacttcag |
36931120 |
T |
|
| Q |
412 |
ttgcatattcctttatcccttgtttagactctcttgatattctctttatagcaacattggtatctatatctttcaaatagcctttataaacaccaccaaa |
511 |
Q |
| |
|
| || ||||| ||| || ||| |||||||||||||||| ||||| | |||||||| || || || ||||||||||| ||||| || ||||||||||| |
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| T |
36931119 |
tggcgtattctagtattccctgtctagactctcttgatatcctcttgacagcaacataggaatttaagtctttcaaataacctttgtatacaccaccaaa |
36931020 |
T |
|
| Q |
512 |
accaccttgcccta |
525 |
Q |
| |
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|||||||||||||| |
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| T |
36931019 |
accaccttgcccta |
36931006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 74 - 295
Target Start/End: Complemental strand, 5821067 - 5820862
Alignment:
| Q |
74 |
ttgtgatcctttctcatgatccacaagccttgccaatccgaaatccccaagcttagcattgaaattgttgtctaacatgatgttgctggatttgacatcc |
173 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||||||| |||||| ||||| ||| |||||||| | | ||| ||||| ||||| ||||||| |
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| T |
5821067 |
ttgtgatcctttctcatgatccacca-cctagccaatctgaaatcaccaagtttaacattgaaaatatagtccaacataatgttattggattt------- |
5820976 |
T |
|
| Q |
174 |
ctatgaagcacacattgttcccattcttcatgaaggtacaaaagtgctgaagccaagtccatagcaatgttgtacctcatttgccatgtcaatacgcttt |
273 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| | |||| ||||| |||||| |||||||||| ||||| ||| ||||||||| | ||| |
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| T |
5820975 |
-tatg----tcacattgttcccattcttcatgaaggtacaacaatgct---gccaaatccataacaatgttgtagctcatatgcaatgtcaatatgattt |
5820884 |
T |
|
| Q |
274 |
ttccgcggtatagatgagaatc |
295 |
Q |
| |
|
|||| || ||| | |||||||| |
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| T |
5820883 |
ttccacgatattggtgagaatc |
5820862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 81 - 202
Target Start/End: Complemental strand, 36934598 - 36934477
Alignment:
| Q |
81 |
cctttctcatgatccacaagccttgccaatccgaaatccccaagcttagcattgaaattgttgtctaacatgatgttgctggatttgacatccctatgaa |
180 |
Q |
| |
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|||||||||||||||| | ||| || | || |||||||| ||||||| |||||| | | ||| ||||| |||||||| ||||| | |||||||||| |
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| T |
36934598 |
cctttctcatgatccatcaacctagctagaccaaaatcccctagcttagtattgaagtcggagtccaacattatgttgcttgattttatgtccctatgaa |
36934499 |
T |
|
| Q |
181 |
gcacacattgttcccattcttc |
202 |
Q |
| |
|
|||||||| |||||||||||| |
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| T |
36934498 |
tcacacatttttcccattcttc |
36934477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 525
Target Start/End: Complemental strand, 36934199 - 36934154
Alignment:
| Q |
480 |
tctttcaaatagcctttataaacaccaccaaaaccaccttgcccta |
525 |
Q |
| |
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||||| |||||||| ||||||||||| |||||||||||||| |||| |
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| T |
36934199 |
tctttaaaatagcccttataaacaccgccaaaaccaccttggccta |
36934154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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