View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5370-Insertion-6 (Length: 424)
Name: NF5370-Insertion-6
Description: NF5370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5370-Insertion-6 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 8 - 424
Target Start/End: Complemental strand, 31663285 - 31662866
Alignment:
| Q |
8 |
tatatatttttatatatttccaagtgggaaagtaccaagttcaataaaaggccatgttcctcattttccctctcatatccaatttttgccctagttatag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31663285 |
tatatatttttatatatttccaagtgggaaagtaccaagttcaataaaaggccatgttcctcattttccctctcatatccaatttttgccctagttatag |
31663186 |
T |
|
| Q |
108 |
caaagtgttaattaatttacactaccnnnnnnntggagaatctgctttggcttccaacaaatgacaagaaggcaatggaagatgagcttataagaggacg |
207 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31663185 |
caaagtgttaattaatttacactaccaaaaaaatggagaatctgctttggcttccaacaaatgacaagaaggcaatggaagatgagcttataagaggacg |
31663086 |
T |
|
| Q |
208 |
tgacatggcaaatcaattacttgaagcactaacttatgatgataagtcaaatatagaagtgaaagggtcaaactcaaaatcatcaccagtgttaccctta |
307 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31663085 |
tgacatggcaaatcaattacttgaggcactgacttatgatgataagtcaaatatagaagtgaaagggtcaaattcaaaatcatcaccagtgttaccctta |
31662986 |
T |
|
| Q |
308 |
attgcaagagatcttgtgcgtgaggtacttaaatcattgacaaatacacttttactcctgaataactgcatagactccaacgatgtggctgttcct---a |
404 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||| ||||| | |
|
|
| T |
31662985 |
attgcaggagatcttgtgcgtgaggtacttaaatcattgacaaatacacttttactcttgaataactgcaaagactccaatgatgtggctcttcctataa |
31662886 |
T |
|
| Q |
405 |
ctattagagatttttctttc |
424 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
31662885 |
ctattagagatttttctttc |
31662866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 141 - 404
Target Start/End: Original strand, 31648413 - 31648688
Alignment:
| Q |
141 |
tggagaatctgctttggcttccaacaaatga---caagaaggcaatggaagatgagcttataagaggacgtgacatggcaaatcaattacttgaagcact |
237 |
Q |
| |
|
|||||||| |||||||||||||||||||| | ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
31648413 |
tggagaatatgctttggcttccaacaaattatggcaaaaaggcaatggaagatgaacttataagaggacgtgacatggcaaatcaattacttgaagtatt |
31648512 |
T |
|
| Q |
238 |
aacttatgatgataagtcaaatat---agaagtgaaagggtcaaactcaaaatcatcaccagtgttacccttaa------ttgcaagagatcttgtgcgt |
328 |
Q |
| |
|
||||| |||||||||||||||||| |||||| |||||||||||| ||||||||||| |||||||||||||| |||| ||||||||||||| |
|
|
| T |
31648513 |
aacttttgatgataagtcaaatattagagaagttaaagggtcaaacacaaaatcatcaaaagtgttacccttaaatattgttgctgaagatcttgtgcgt |
31648612 |
T |
|
| Q |
329 |
gaggtacttaaatcattgacaaatacacttttactcctgaataactgcatagactccaacgatgtggctgttccta |
404 |
Q |
| |
|
||||| || |||||||||||||| |||||||| || |||| || ||| ||||||||| ||||||| ||||||| |
|
|
| T |
31648613 |
gaggtgctcaaatcattgacaaacacacttttgctgttgaacaatggcaaagactccaatgatgtggtagttccta |
31648688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 141 - 279
Target Start/End: Original strand, 31655433 - 31655577
Alignment:
| Q |
141 |
tggagaatctgctttggcttccaacaaatgac---aagaaggcaatggaagatgagcttataagaggacgtgacatggcaaatcaattacttgaagcact |
237 |
Q |
| |
|
||||||||| ||||| |||||| |||||| || || |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
31655433 |
tggagaatcagcttttgcttcctacaaattacggtaaaaaggcaatggaagaagagctaataagaggacgtgacatggcaaatcaattacttgaagtatt |
31655532 |
T |
|
| Q |
238 |
aacttatgatgataagtcaaatat---agaagtgaaagggtcaaa |
279 |
Q |
| |
|
||||| |||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
31655533 |
aacttttgatgataagtcaaatattagagaagttaaagggtcaaa |
31655577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 405
Target Start/End: Original strand, 31655590 - 31655679
Alignment:
| Q |
316 |
agatcttgtgcgtgaggtacttaaatcattgacaaatacacttttactcctgaataactgcatagactccaacgatgtggctgttcctac |
405 |
Q |
| |
|
||||||||||| |||||| || ||||||||||||||||||||||| | |||| || ||| ||| ||||| ||| ||||||||||||| |
|
|
| T |
31655590 |
agatcttgtgcttgaggtgctcaaatcattgacaaatacacttttgatgttgaacaatggcaaagagtccaatgatatggctgttcctac |
31655679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University