View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5371-Insertion-3 (Length: 820)

Name: NF5371-Insertion-3
Description: NF5371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5371-Insertion-3
NF5371-Insertion-3
[»] chr1 (2 HSPs)
chr1 (7-820)||(27656156-27656970)
chr1 (724-807)||(28351315-28351398)
[»] chr7 (7 HSPs)
chr7 (266-408)||(41309954-41310096)
chr7 (291-408)||(41324645-41324762)
chr7 (567-630)||(41309780-41309843)
chr7 (719-779)||(9895276-9895336)
chr7 (78-124)||(41310313-41310359)
chr7 (563-630)||(41324478-41324545)
chr7 (725-779)||(38652447-38652501)
[»] chr3 (5 HSPs)
chr3 (712-808)||(20532502-20532598)
chr3 (646-715)||(16983938-16984007)
chr3 (647-716)||(20532624-20532692)
chr3 (747-808)||(47844140-47844201)
chr3 (712-763)||(21014360-21014411)
[»] chr5 (1 HSPs)
chr5 (712-808)||(18148205-18148301)
[»] chr2 (5 HSPs)
chr2 (712-768)||(44472935-44472991)
chr2 (725-804)||(7708836-7708915)
chr2 (737-782)||(26317580-26317625)
chr2 (717-778)||(37444722-37444783)
chr2 (723-756)||(17765481-17765514)
[»] chr6 (6 HSPs)
chr6 (645-692)||(3731346-3731393)
chr6 (644-713)||(33184916-33184984)
chr6 (712-808)||(33185013-33185109)
chr6 (646-703)||(10919711-10919768)
chr6 (719-756)||(15959333-15959370)
chr6 (724-758)||(10587381-10587415)
[»] chr8 (2 HSPs)
chr8 (712-777)||(45439370-45439434)
chr8 (744-778)||(9594695-9594729)
[»] chr4 (1 HSPs)
chr4 (725-778)||(2187028-2187081)


Alignment Details
Target: chr1 (Bit Score: 646; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 7 - 820
Target Start/End: Original strand, 27656156 - 27656970
Alignment:
Q  7 aaggaccacactagagggagagtcagttcagcaagtaccaaaggagcaagaggttaagcacnnnnnnngtagggttgcaactcttgatgcatttaggggc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||       ||||||||||||||||||||||||||||||||    
T  27656156 aaggaccacactagagggagagtcagttcagcaagtaccaaaggagcaagagattaagcacaaaaaaagtagggttgcaactcttgatgcatttaggggc 27656255  T
Q  107 ctcacaatcgtggttagtacatacttttctaagatacttttaacgctatcaataaatcataacaaatcacatgtgtaactttagaaatagtcgtaatgat 206  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||     
T  27656256 ctcacaatcgtggttagtacatacttttctaagatgcttttaacgctatcaataaatcataacaaatcatatgtgtaactttagaagtagtcataatgaa 27656355  T
Q  207 aataaaatatttttaattatctgacaatcgatattaattgacgatctaaaaatatttacagttgatgatattggtggatgatggtggtggagcttatcct 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27656356 aataaaatatttttaattatctgacaatcgatattaattgacgatctaacaatatttacagttgatgatattggtggatgatggtggtggagcttatcct 27656455  T
Q  307 caaattgatcactctccatggaatggatgtacattggctgatttcgttatgccttttttccttttcattgttggagttgctatagctcttgcattaaagg 406  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27656456 cgaattgatcactctccatggaatggatgtacattggctgatttcgttatgccttttttccttttcattgttggagttgctatagctcttgcattaaagg 27656555  T
Q  407 tattatactatgcatgtaatgcagtgtcacttgattaacaaagagctatatcctcattcctgtatgattatttctagattctagttcatgtatatctata 506  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||  ||||||||| ||||||| ||||||||||||||||||||||    
T  27656556 tattatactatgcatgtaatgcaatgtcacttaattaacaaagagctatatcctcatttttgtatgattgtttctagtttctagttcatgtatatctata 27656655  T
Q  507 tagtccattgattatgacctataagtaacaatgcagagaattcccaaagttaaggttgctgtgaagaagataatttttaggacattaaaacttttcttct 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  27656656 tagtccattgattatgacctataagtaacaatgcagagaattcccaaagttaaggttgctgtgaagaagataatttttaggacattaaagcttctcttct 27656755  T
Q  607 ggggtttacttttgcaaggtaaacnnnnnnnnattaggccaaaatgaattatattaacactgacaacgcaatcgcctcagcacaaggcgtgacaaagcaa 706  Q
    ||||||||||||||||||||||||        || |||||||||||||||||||||||||||||| | |||||| ||||||||||| |||| |||| |||    
T  27656756 ggggtttacttttgcaaggtaaacttttttttatcaggccaaaatgaattatattaacactgacagcacaatcgtctcagcacaagacgtgccaaaacaa 27656855  T
Q  707 ttacgaaaaagctagtcgatgcccaaacataaaagtgggctcgaccaccacaaatgagtaccgaaaacaaaattaatcttgctagctttcagccaccac- 805  Q
    | ||||||||||||| |||| | |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  27656856 tcacgaaaaagctagccgatcctcaaaaataaaagtgggctcgaccaccacaaatgagtactgaaaacaaaattaatcttgctagctttcagccaccaca 27656955  T
Q  806 aaaacctttacctct 820  Q
    |||||||||||||||    
T  27656956 aaaacctttacctct 27656970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 724 - 807
Target Start/End: Original strand, 28351315 - 28351398
Alignment:
Q  724 gatgcccaaacataaaagtgggctcgaccaccacaaatgagtaccgaaaacaaaattaatcttgctagctttcagccaccacaa 807  Q
    |||||| ||||| | |||||||||||||||||||||| |||||| ||||| |||  ||   || |||||||||| |||||||||    
T  28351315 gatgccaaaacacataagtgggctcgaccaccacaaacgagtactgaaaataaaggtagcgttactagctttcaaccaccacaa 28351398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 3e-41; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 266 - 408
Target Start/End: Complemental strand, 41310096 - 41309954
Alignment:
Q  266 agttgatgatattggtggatgatggtggtggagcttatcctcaaattgatcactctccatggaatggatgtacattggctgatttcgttatgcctttttt 365  Q
    ||||||||||||||||||| |||| ||||||||||||| | |  ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||    
T  41310096 agttgatgatattggtggacgatgctggtggagcttattcacgcattgatcactctccatggaatggatgtactttggctgattttgttatgcctttctt 41309997  T
Q  366 ccttttcattgttggagttgctatagctcttgcattaaaggta 408  Q
     |||||||| ||||| || || |||||||||||||||||||||    
T  41309996 tcttttcatcgttggtgtggccatagctcttgcattaaaggta 41309954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 291 - 408
Target Start/End: Complemental strand, 41324762 - 41324645
Alignment:
Q  291 tggtggagcttatcctcaaattgatcactctccatggaatggatgtacattggctgatttcgttatgccttttttccttttcattgttggagttgctata 390  Q
    ||||||||||||||| |  ||||||||  | || ||| |||||||||| ||||||||||| || |||||||| || |||||||||||||| ||||| |||    
T  41324762 tggtggagcttatccacgcattgatcatgccccgtgggatggatgtactttggctgattttgtaatgcctttctttcttttcattgttggtgttgccata 41324663  T
Q  391 gctcttgcattaaaggta 408  Q
    || |||||||||||||||    
T  41324662 gcccttgcattaaaggta 41324645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 630
Target Start/End: Complemental strand, 41309843 - 41309780
Alignment:
Q  567 gtgaagaagataatttttaggacattaaaacttttcttctggggtttacttttgcaaggtaaac 630  Q
    ||||||||||||||| | |||||||| |||||| |||| |||||| ||||||||||||||||||    
T  41309843 gtgaagaagataattctcaggacattgaaacttctcttttggggtatacttttgcaaggtaaac 41309780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 719 - 779
Target Start/End: Original strand, 9895276 - 9895336
Alignment:
Q  719 tagtcgatgcccaaacataaaagtgggctcgaccaccacaaatgagtaccgaaaacaaaat 779  Q
    ||||||||||||||||||||||| ||||||| |||||||| | || |||| ||||||||||    
T  9895276 tagtcgatgcccaaacataaaagcgggctcgtccaccacatacgaataccaaaaacaaaat 9895336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 41310359 - 41310313
Alignment:
Q  78 gggttgcaactcttgatgcatttaggggcctcacaatcgtggttagt 124  Q
    |||||||||| ||||||||||||||||||||||| || |||||||||    
T  41310359 gggttgcaacacttgatgcatttaggggcctcaccattgtggttagt 41310313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 630
Target Start/End: Complemental strand, 41324545 - 41324478
Alignment:
Q  563 tgctgtgaagaagataatttttaggacattaaaacttttcttctggggtttacttttgcaaggtaaac 630  Q
    ||||||||| ||||||||  |||||||||| || ||| |||| |||||| |||| |||||||||||||    
T  41324545 tgctgtgaaaaagataatacttaggacattgaagcttctcttttggggtatactattgcaaggtaaac 41324478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 725 - 779
Target Start/End: Complemental strand, 38652501 - 38652447
Alignment:
Q  725 atgcccaaacataaaagtgggctcgaccaccacaaatgagtaccgaaaacaaaat 779  Q
    ||||||||||||| ||| |||||||||||||||| |||||| || |||| |||||    
T  38652501 atgcccaaacatacaagcgggctcgaccaccacatatgagtcccaaaaataaaat 38652447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 6e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 712 - 808
Target Start/End: Complemental strand, 20532598 - 20532502
Alignment:
Q  712 aaaaagctagtcgatgcccaaacataaaagtgggctcgaccaccacaaatgagtaccgaaaacaaaattaatcttgctagctttcagccaccacaaa 808  Q
    ||||| |||| ||||||||||||| | ||||||||||||||||||||||||||| |||||||||||   | |||| || ||||||||||||||||||    
T  20532598 aaaaatctagccgatgcccaaacacataagtgggctcgaccaccacaaatgagtgccgaaaacaaaggcagtcttactggctttcagccaccacaaa 20532502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 646 - 715
Target Start/End: Original strand, 16983938 - 16984007
Alignment:
Q  646 caaaatgaattatattaacactgacaacgcaatcgcctcagcacaaggcgtgacaaagcaattacgaaaa 715  Q
    ||||||||||||||||||||||||||  |||||||| ||||||||||||||| |||| |||| |||||||    
T  16983938 caaaatgaattatattaacactgacagtgcaatcgcttcagcacaaggcgtgccaaaacaatcacgaaaa 16984007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 647 - 716
Target Start/End: Complemental strand, 20532692 - 20532624
Alignment:
Q  647 aaaatgaattatattaacactgacaacgcaatcgcctcagcacaaggcgtgacaaagcaattacgaaaaa 716  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||  |||| ||| ||||||||    
T  20532692 aaaatgaattatattaacactgacaacgcaatcgcc-cagtacaaggcgtgcgaaagaaatcacgaaaaa 20532624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 747 - 808
Target Start/End: Complemental strand, 47844201 - 47844140
Alignment:
Q  747 tcgaccaccacaaatgagtaccgaaaacaaaattaatcttgctagctttcagccaccacaaa 808  Q
    ||||||||||||||||| ||||||||| ||||||   ||| |||||||| ||||||||||||    
T  47844201 tcgaccaccacaaatgaataccgaaaataaaattggcctttctagcttttagccaccacaaa 47844140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 712 - 763
Target Start/End: Original strand, 21014360 - 21014411
Alignment:
Q  712 aaaaagctagtcgatgcccaaacataaaagtgggctcgaccaccacaaatga 763  Q
    |||||| ||| ||||||||||||| | |||||||||| ||||||||||||||    
T  21014360 aaaaagttagacgatgcccaaacacataagtgggctcaaccaccacaaatga 21014411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 712 - 808
Target Start/End: Complemental strand, 18148301 - 18148205
Alignment:
Q  712 aaaaagctagtcgatgcccaaacataaaagtgggctcgaccaccacaaatgagtaccgaaaacaaaattaatcttgctagctttcagccaccacaaa 808  Q
    |||||||||| |||| |||||||| | ||||| ||| |||||||||||||||||||||||||||||  ||   || |||||||||| ||||||||||    
T  18148301 aaaaagctagccgatacccaaacacataagtgagcttgaccaccacaaatgagtaccgaaaacaaaggtagcgttactagctttcaaccaccacaaa 18148205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 712 - 768
Target Start/End: Original strand, 44472935 - 44472991
Alignment:
Q  712 aaaaagctagtcgatgcccaaacataaaagtgggctcgaccaccacaaatgagtacc 768  Q
    ||||| |||||||||||||||||| ||||| ||||||||||||||| ||||||||||    
T  44472935 aaaaaactagtcgatgcccaaacacaaaagagggctcgaccaccacgaatgagtacc 44472991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 725 - 804
Target Start/End: Original strand, 7708836 - 7708915
Alignment:
Q  725 atgcccaaacataaaagtgggctcgaccaccacaaatgagtaccgaaaacaaaattaatcttgctagctttcagccacca 804  Q
    ||||||||||| || || |||||||||||||||| |||| |||| |||||||||||||  ||  ||||||| ||||||||    
T  7708836 atgcccaaacacaagagcgggctcgaccaccacatatgaataccaaaaacaaaattaactttcttagctttaagccacca 7708915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 737 - 782
Target Start/End: Complemental strand, 26317625 - 26317580
Alignment:
Q  737 aaaagtgggctcgaccaccacaaatgagtaccgaaaacaaaattaa 782  Q
    ||||||||||||||||||||||||||| || | |||||||||||||    
T  26317625 aaaagtgggctcgaccaccacaaatgaatagcaaaaacaaaattaa 26317580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 717 - 778
Target Start/End: Original strand, 37444722 - 37444783
Alignment:
Q  717 gctagtcgatgcccaaacataaaagtgggctcgaccaccacaaatgagtaccgaaaacaaaa 778  Q
    ||||||||||||||||||| || || ||||||||||| ||||||||||| || |||| ||||    
T  37444722 gctagtcgatgcccaaacacaacagggggctcgaccatcacaaatgagtgccaaaaataaaa 37444783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 723 - 756
Target Start/End: Complemental strand, 17765514 - 17765481
Alignment:
Q  723 cgatgcccaaacataaaagtgggctcgaccacca 756  Q
    ||||||||| ||||||||||||||||||||||||    
T  17765514 cgatgcccatacataaaagtgggctcgaccacca 17765481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 645 - 692
Target Start/End: Original strand, 3731346 - 3731393
Alignment:
Q  645 ccaaaatgaattatattaacactgacaacgcaatcgcctcagcacaag 692  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||    
T  3731346 ccaaaatgaattatattaacactgacaacgcaattgcttcagcacaag 3731393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 644 - 713
Target Start/End: Original strand, 33184916 - 33184984
Alignment:
Q  644 gccaaaatgaattatattaacactgacaacgcaatcgcctcagcacaaggcgtgacaaagcaattacgaa 713  Q
    |||||||||||||| ||||||||||||| |||||| || ||||||||||||||| |||| |||| |||||    
T  33184916 gccaaaatgaatta-attaacactgacatcgcaattgcttcagcacaaggcgtgccaaaacaatcacgaa 33184984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 712 - 808
Target Start/End: Original strand, 33185013 - 33185109
Alignment:
Q  712 aaaaagctagtcgatgcccaaacataaaagtgggctcgaccaccacaaatgagtaccgaaaacaaaattaatcttgctagctttcagccaccacaaa 808  Q
    ||||||||||| ||||| || ||| | |||||||||||||||||| |||||||||| |||| ||||  ||   || |||||||||| ||||||||||    
T  33185013 aaaaagctagttgatgcacacacacataagtgggctcgaccaccaaaaatgagtactgaaagcaaatgtagcattactagctttcaaccaccacaaa 33185109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 646 - 703
Target Start/End: Original strand, 10919711 - 10919768
Alignment:
Q  646 caaaatgaattatattaacactgacaacgcaatcgcctcagcacaaggcgtgacaaag 703  Q
    ||||||||||||||||||||||||||||| |||  | |||||||||| |||| |||||    
T  10919711 caaaatgaattatattaacactgacaacgtaattacttcagcacaagacgtgccaaag 10919768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 719 - 756
Target Start/End: Complemental strand, 15959370 - 15959333
Alignment:
Q  719 tagtcgatgcccaaacataaaagtgggctcgaccacca 756  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  15959370 tagtcgatgcccatacataaaagtgggctcgaccacca 15959333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 724 - 758
Target Start/End: Complemental strand, 10587415 - 10587381
Alignment:
Q  724 gatgcccaaacataaaagtgggctcgaccaccaca 758  Q
    |||||||||||||| ||||||||||||||||||||    
T  10587415 gatgcccaaacatacaagtgggctcgaccaccaca 10587381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 712 - 777
Target Start/End: Complemental strand, 45439434 - 45439370
Alignment:
Q  712 aaaaagctagtcgatgcccaaacataaaagtgggctcgaccaccacaaatgagtaccgaaaacaaa 777  Q
    |||||||||| ||||||||||||| | |||||||||||||| |||| |||||||||| ||||||||    
T  45439434 aaaaagctagccgatgcccaaacacacaagtgggctcgaccgccac-aatgagtaccaaaaacaaa 45439370  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 744 - 778
Target Start/End: Complemental strand, 9594729 - 9594695
Alignment:
Q  744 ggctcgaccaccacaaatgagtaccgaaaacaaaa 778  Q
    |||||||||||||||||||||| ||||||||||||    
T  9594729 ggctcgaccaccacaaatgagtgccgaaaacaaaa 9594695  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 725 - 778
Target Start/End: Original strand, 2187028 - 2187081
Alignment:
Q  725 atgcccaaacataaaagtgggctcgaccaccacaaatgagtaccgaaaacaaaa 778  Q
    ||||||||||| | ||| |||||||||||||||| |||||| || |||||||||    
T  2187028 atgcccaaacaaacaagcgggctcgaccaccacatatgagtcccaaaaacaaaa 2187081  T

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