View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5371-Insertion-4 (Length: 790)
Name: NF5371-Insertion-4
Description: NF5371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5371-Insertion-4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 702; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 8 - 790
Target Start/End: Original strand, 31838811 - 31839615
Alignment:
| Q |
8 |
gtttactcagtattgttaaacggcggccatagcatagtggagttttaacaaatttctattgttctgcaatatgtatttagtacaaattgttgttcaatac |
107 |
Q |
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| T |
31838811 |
gtttactcagtattgttaaacagcggctatagcatagtggagttttaacaaatttctattgttctgcaatatgtatttagtacaaattgttgttcaatag |
31838910 |
T |
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| Q |
108 |
cagctctagtggtgctatagcgatgtagcgaaacgaaattcgaacaaaccgctaatttctgcgatccatgtttgacatcactgcgtttacttaatgccgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31838911 |
cagctctagtggtgctatagcgatgtagcgaaacgaaattcgaacaaaccgctaatttctgcgatccatgtttgacatcactgcgtttacttaatgccgt |
31839010 |
T |
|
| Q |
208 |
gcacaagctttcagcctttaataactcactttagttattcactgcttgtggtaactgagttgttggtatgagttatacactacatttttattactgagta |
307 |
Q |
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| T |
31839011 |
gcacaagctttcagcctttaataactcactttagtaattaactgcttgtggtaactgagttgttggtatgagttatacactacatttttattactgagta |
31839110 |
T |
|
| Q |
308 |
aaacaagaaattgttggtcactctgattcacaagctaaggcatatttataaaatttgttttataaggaattttttatcactctggttcacaagctaacac |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31839111 |
aaacaagaaattgttggtcactctgattcacaagctaacacatatttataaaatttgttttataaggaattttttatcactctggttcacaagctaacac |
31839210 |
T |
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| Q |
408 |
agatttat----------------------aatttattgaatcgatgagtgttggaagcgaagtttggtgcatttctccatttaatgaatctgaaatctt |
485 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31839211 |
agatttataaaatttattttataagagaaaaatttattgaatcgatgagtgttggaagcgaagtttggtgcatttctccatttaatgaatctgaaatctt |
31839310 |
T |
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| Q |
486 |
tcattcgtctgctaattgctattattttgctaatcgttccgtgcaggaatgggagtttatgatgccatgaagttatgcaaggcagacgtgtcaaccgttt |
585 |
Q |
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| T |
31839311 |
tcattcgtctgctaattgctattattttgctaatcgttccgtgcaggaatgggagtttatgatgccatgaagttatgcaaggcagacgtgtcaaccgttt |
31839410 |
T |
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| Q |
586 |
gccttggacttgcagcatccatgggtgcatttctcctcgctgctggtacaaaggggaagaggtattgtatgccgaattccagagttatgattcatcaacc |
685 |
Q |
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| T |
31839411 |
gccttggacttgcagcatccatgggtgcatttctcctcgctgctggtacaaaggggaagaggtattgtatgccgaattccagagttatgattcatcaacc |
31839510 |
T |
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| Q |
686 |
gctcgggtctgctggtggaaaagtaagaccgtccacttatatcctccggttttgattattgtcaactagtaataggtctgaagtttgtcatggctatctt |
785 |
Q |
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| T |
31839511 |
gctcgggtctgctggtggaaaagtaagactgtccacttatatcctccggttttgattattgtcaactagtaataggtctgaagtttgtcatggctatctt |
31839610 |
T |
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| Q |
786 |
ttttg |
790 |
Q |
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||||| |
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| T |
31839611 |
ttttg |
31839615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 15606418 - 15606337
Alignment:
| Q |
20 |
ttgttaaacggcggccatagcatagtggagttttaacaaatttctattgttctgcaatatg-tatttagtacaaattgttgt |
100 |
Q |
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| T |
15606418 |
ttgttaaacagcggctatagcattgtgaaatttaaacaaatcactattgttctgctatatgctatttagtacaaaatgttgt |
15606337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 33277769 - 33277811
Alignment:
| Q |
36 |
atagcatagtggagttttaacaaatttctattgttctgcaata |
78 |
Q |
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| T |
33277769 |
atagcatagtggaattttaacaaactgctattgttctgcaata |
33277811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 53855790 - 53855724
Alignment:
| Q |
63 |
ctattgttctgcaatatg-tatttagtacaaattgttgttcaataccagctctagtggtgctatagc |
128 |
Q |
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| T |
53855790 |
ctattgttctgcaatatgctatttagtacaaaatgttgtcaaatagctgctttagtcgtgctatagc |
53855724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 28781173 - 28781108
Alignment:
| Q |
36 |
atagcatagtggagttttaacaaatttctattgttctgcaatatgt-atttagtacaaattgttgt |
100 |
Q |
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||||||||||||| ||||||||||| || |||||||||||||| | |||||||||| | |||||| |
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| T |
28781173 |
atagcatagtggaattttaacaaatcgctgttgttctgcaatatttgatttagtacagagtgttgt |
28781108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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