View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5371-Insertion-5 (Length: 670)

Name: NF5371-Insertion-5
Description: NF5371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5371-Insertion-5
NF5371-Insertion-5
[»] chr4 (34 HSPs)
chr4 (7-208)||(53958491-53958692)
chr4 (435-656)||(53958684-53958913)
chr4 (211-432)||(1535726-1535947)
chr4 (207-429)||(49284308-49284530)
chr4 (208-432)||(35018888-35019111)
chr4 (208-363)||(25954702-25954857)
chr4 (208-363)||(34240945-34241100)
chr4 (208-428)||(52632470-52632680)
chr4 (209-427)||(46583508-46583716)
chr4 (208-363)||(37801285-37801440)
chr4 (253-432)||(36012138-36012316)
chr4 (208-319)||(16338309-16338420)
chr4 (253-432)||(17888502-17888683)
chr4 (206-432)||(31377339-31377565)
chr4 (279-432)||(16338165-16338318)
chr4 (253-349)||(322584-322682)
chr4 (253-362)||(54090176-54090286)
chr4 (274-362)||(20818584-20818673)
chr4 (258-362)||(9742555-9742661)
chr4 (253-362)||(11054448-11054562)
chr4 (253-350)||(12792265-12792364)
chr4 (253-362)||(46473989-46474100)
chr4 (253-362)||(50328791-50328902)
chr4 (274-362)||(19124760-19124849)
chr4 (283-350)||(10094427-10094495)
chr4 (253-350)||(35322738-35322837)
chr4 (380-429)||(36851342-36851391)
chr4 (386-432)||(11054585-11054631)
chr4 (300-350)||(47084056-47084106)
chr4 (403-433)||(25954885-25954915)
chr4 (253-362)||(33981997-33982110)
chr4 (329-363)||(36851408-36851442)
chr4 (403-432)||(34241128-34241157)
chr4 (300-348)||(5780790-5780838)
[»] chr8 (16 HSPs)
chr8 (208-432)||(22324548-22324772)
chr8 (206-432)||(35806744-35806970)
chr8 (208-433)||(21525310-21525535)
chr8 (211-432)||(42072383-42072604)
chr8 (253-432)||(33934321-33934500)
chr8 (208-432)||(42013824-42014048)
chr8 (253-362)||(26021392-26021502)
chr8 (274-360)||(24065291-24065377)
chr8 (253-352)||(19334779-19334879)
chr8 (274-363)||(21488084-21488173)
chr8 (253-350)||(2271197-2271289)
chr8 (308-362)||(16523158-16523212)
chr8 (253-362)||(10112042-10112153)
chr8 (380-432)||(26021520-26021573)
chr8 (274-350)||(43282885-43282962)
chr8 (274-305)||(34697469-34697500)
[»] chr7 (17 HSPs)
chr7 (205-432)||(34707065-34707292)
chr7 (208-432)||(44164695-44164919)
chr7 (208-432)||(10576625-10576849)
chr7 (264-432)||(34259526-34259694)
chr7 (208-432)||(29555891-29556115)
chr7 (209-363)||(32876551-32876705)
chr7 (208-432)||(29238095-29238319)
chr7 (208-363)||(24320460-24320614)
chr7 (271-432)||(29981065-29981226)
chr7 (253-362)||(17303136-17303248)
chr7 (253-362)||(33057679-33057789)
chr7 (209-362)||(19334582-19334736)
chr7 (253-362)||(10334173-10334284)
chr7 (253-359)||(26284404-26284510)
chr7 (279-350)||(9770682-9770753)
chr7 (300-362)||(15017817-15017879)
chr7 (208-236)||(34259484-34259512)
[»] chr2 (23 HSPs)
chr2 (211-432)||(42769710-42769931)
chr2 (208-432)||(14941996-14942220)
chr2 (206-432)||(14186390-14186616)
chr2 (207-432)||(19181499-19181724)
chr2 (253-432)||(29846439-29846618)
chr2 (211-432)||(40277240-40277461)
chr2 (208-432)||(3956523-3956748)
chr2 (253-360)||(1387312-1387420)
chr2 (253-362)||(6318480-6318592)
chr2 (253-348)||(3597903-3597998)
chr2 (253-350)||(14539738-14539837)
chr2 (380-432)||(3597842-3597894)
chr2 (253-362)||(40780050-40780162)
chr2 (253-360)||(33009667-33009777)
chr2 (277-348)||(43139766-43139839)
chr2 (253-362)||(41674728-41674840)
chr2 (253-350)||(28321737-28321836)
chr2 (253-348)||(23685406-23685503)
chr2 (389-432)||(1386114-1386157)
chr2 (395-432)||(28321667-28321704)
chr2 (277-348)||(25665244-25665316)
chr2 (211-239)||(29846396-29846424)
chr2 (253-335)||(32486239-32486323)
[»] chr5 (26 HSPs)
chr5 (201-432)||(37168985-37169216)
chr5 (208-432)||(23218437-23218661)
chr5 (208-431)||(38397550-38397773)
chr5 (214-432)||(6257362-6257580)
chr5 (253-432)||(16618522-16618701)
chr5 (212-432)||(39862439-39862659)
chr5 (211-432)||(15631568-15631790)
chr5 (206-362)||(10081094-10081251)
chr5 (253-432)||(8456915-8457096)
chr5 (253-362)||(36769096-36769206)
chr5 (256-362)||(614414-614522)
chr5 (211-359)||(9738008-9738156)
chr5 (253-362)||(25560349-25560460)
chr5 (253-362)||(11856290-11856401)
chr5 (253-362)||(42119617-42119728)
chr5 (274-350)||(6174762-6174840)
chr5 (282-362)||(10115185-10115266)
chr5 (253-362)||(27916134-27916246)
chr5 (277-350)||(33271304-33271377)
chr5 (213-362)||(29491436-29491585)
chr5 (274-362)||(29790241-29790328)
chr5 (279-362)||(10052522-10052606)
chr5 (274-342)||(3341162-3341230)
chr5 (381-432)||(10081272-10081323)
chr5 (275-320)||(33188406-33188451)
chr5 (300-348)||(19322058-19322106)
[»] chr6 (19 HSPs)
chr6 (208-432)||(24694603-24694827)
chr6 (207-432)||(9231806-9232031)
chr6 (253-363)||(14309819-14309929)
chr6 (209-432)||(13627494-13627716)
chr6 (282-363)||(1727954-1728035)
chr6 (206-305)||(11084560-11084659)
chr6 (274-362)||(34103703-34103791)
chr6 (253-350)||(27863695-27863793)
chr6 (253-350)||(28750684-28750783)
chr6 (258-362)||(13103140-13103246)
chr6 (253-350)||(11279536-11279634)
chr6 (274-350)||(11212689-11212765)
chr6 (312-363)||(24497595-24497646)
chr6 (381-432)||(11084715-11084765)
chr6 (256-317)||(24500767-24500830)
chr6 (386-432)||(34383363-34383409)
chr6 (330-363)||(11084664-11084697)
chr6 (208-240)||(1728041-1728073)
chr6 (308-348)||(8412717-8412757)
[»] chr3 (27 HSPs)
chr3 (208-432)||(21853148-21853373)
chr3 (211-432)||(40845869-40846090)
chr3 (208-432)||(44994920-44995145)
chr3 (209-432)||(13856052-13856275)
chr3 (208-432)||(5391410-5391633)
chr3 (208-363)||(23467515-23467671)
chr3 (209-432)||(8950456-8950679)
chr3 (253-360)||(32352844-32352951)
chr3 (253-362)||(20382514-20382625)
chr3 (253-362)||(1781757-1781868)
chr3 (253-362)||(43347358-43347468)
chr3 (253-362)||(19649394-19649506)
chr3 (253-363)||(3178699-3178810)
chr3 (253-362)||(36539627-36539738)
chr3 (257-361)||(54546904-54547009)
chr3 (253-350)||(10839414-10839513)
chr3 (254-362)||(8926762-8926872)
chr3 (262-348)||(22845398-22845484)
chr3 (276-362)||(46685805-46685891)
chr3 (253-362)||(48206849-48206959)
chr3 (263-354)||(47889731-47889824)
chr3 (253-348)||(33103739-33103835)
chr3 (253-350)||(6280393-6280491)
chr3 (278-350)||(51336231-51336303)
chr3 (380-432)||(20382642-20382693)
chr3 (386-432)||(36539762-36539808)
chr3 (253-317)||(36826021-36826087)
[»] chr1 (27 HSPs)
chr1 (256-429)||(5974988-5975161)
chr1 (208-432)||(42517246-42517474)
chr1 (206-432)||(7742731-7742957)
chr1 (210-363)||(3346740-3346893)
chr1 (253-432)||(49902465-49902644)
chr1 (207-432)||(48392358-48392581)
chr1 (208-432)||(23908237-23908451)
chr1 (253-432)||(47022699-47022878)
chr1 (208-432)||(10155968-10156192)
chr1 (208-363)||(29149569-29149724)
chr1 (256-432)||(38859849-38860027)
chr1 (253-362)||(10907670-10907781)
chr1 (253-362)||(42456566-42456678)
chr1 (281-349)||(5558334-5558402)
chr1 (253-362)||(26835333-26835444)
chr1 (274-342)||(30252787-30252856)
chr1 (274-350)||(30745361-30745438)
chr1 (274-350)||(30766812-30766889)
chr1 (253-362)||(14796871-14796982)
chr1 (253-362)||(14805745-14805856)
chr1 (253-362)||(44107410-44107521)
chr1 (380-432)||(29149510-29149562)
chr1 (278-350)||(26511667-26511739)
chr1 (275-317)||(8430508-8430551)
chr1 (380-432)||(3346910-3346962)
chr1 (274-362)||(13131914-13132002)
chr1 (274-350)||(45968685-45968761)
[»] scaffold0079 (2 HSPs)
scaffold0079 (208-319)||(54440-54551)
scaffold0079 (279-432)||(54542-54695)
[»] scaffold0045 (1 HSPs)
scaffold0045 (274-362)||(34474-34563)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-107; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 7 - 208
Target Start/End: Original strand, 53958491 - 53958692
Alignment:
Q  7 aagttacaccaagcaagtgaaaggaaatccattgactcagggtgtgcatctgaaggggatagattaaattctgaagccatgttaatgtgatgatatccca 106  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53958491 aagttacaccaagcaagtgaaaggaaatccattgagtcagggtgtgcatctgaaggggatagattaaattctgaagccatgttaatgtgatgatatccca 53958590  T
Q  107 aaaacacaagattattttggaaacaaatgagttgaacaggatgaaaattcaacaaaccatgcatgcatatttatagttgctaaatcatgaacccatgtta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53958591 aaaacacaagattattttggaaacaaatgagttgaacaggatgaaaattcaacaaaccatgcatgcatatttatagttgctaaatcatgaacccatgtta 53958690  T
Q  207 gc 208  Q
    ||    
T  53958691 gc 53958692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 435 - 656
Target Start/End: Original strand, 53958684 - 53958913
Alignment:
Q  435 catgttagctcctctgtatgtcgtcatgcaattattgaatctctaccattgaatcaacatcaaacgactcatatttttactttacaaaattcattttatt 534  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53958684 catgttagctcctctgtatgtcgtcatgcaattattgaatctctaccattgaatcaacatcaaacgactcatatttttactttacaaaattcattttatt 53958783  T
Q  535 ataaacaaattttacatcaggnnnnnnngaatgaaatattagtaaatttacttatttatccaa--------tataataattctaaaatacttctcattta 626  Q
    |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||        ||| |||||||||||||||||||||||||    
T  53958784 ataaacaaattttacatcaggtttttttgaatgaaatattagtaaatttacttatttatccaatatttagttatgataattctaaaatacttctcattta 53958883  T
Q  627 atttatcttcttgaatttttaggggaatcg 656  Q
    ||||| ||||||||||||||||| ||||||    
T  53958884 atttaacttcttgaatttttaggtgaatcg 53958913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 211 - 432
Target Start/End: Original strand, 1535726 - 1535947
Alignment:
Q  211 tggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaa 310  Q
    |||||||||||||||||||||||||||||| |          |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1535726 tggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaa 1535825  T
Q  311 agaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccgggg 410  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||| |||    
T  1535826 agaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgccccggg 1535925  T
Q  411 tcgccgggccttagaaccgccc 432  Q
    ||||||||||||||||||||||    
T  1535926 tcgccgggccttagaaccgccc 1535947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 207 - 429
Target Start/End: Original strand, 49284308 - 49284530
Alignment:
Q  207 gcagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaat 306  Q
    |||||||||||||||||||||||||||| ||||| |          |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  49284308 gcagtggcggagccaggaatattgtaaaacccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaaacaaataataaaaaat 49284407  T
Q  307 gtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgccc 406  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||                ||||||||||||||||| |||||||||    
T  49284408 gtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccggacgagtgccc 49284507  T
Q  407 ggggtcgccgggccttagaaccg 429  Q
    ||| |||| ||||||||||||||    
T  49284508 gggttcgctgggccttagaaccg 49284530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 208 - 432
Target Start/End: Original strand, 35018888 - 35019111
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 307  Q
    |||||||||||||||||||||||||||||||||||          |||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  35018888 cagtggcggagccaggaatattgtaaagcccggacaaaaaaaaatttgcaacacatttataaggtgtacataagaaattgcaagcaaataataaaaaatg 35018987  T
Q  308 taaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccg 407  Q
    |||||||||| ||||||||| | |||||||||||||||||||||| ||||||||||                |||||||| ||||||||||||||||||     
T  35018988 taaagaaattacctaatttataagggtttatataagaaattcata-ggatttacacaagaaattgtaaaaaatttggcccagagcccgggcgagtgccca 35019086  T
Q  408 gggtcgccgggccttagaaccgccc 432  Q
    |||||||||||||||||||||||||    
T  35019087 gggtcgccgggccttagaaccgccc 35019111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 208 - 363
Target Start/End: Original strand, 25954702 - 25954857
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 307  Q
    ||||||||||||||||||||||||||||||||| |          |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25954702 cagtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 25954801  T
Q  308 taaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacac 363  Q
    ||||||||||||| |||||| ||| |||||||||||||||||||||| ||||||||    
T  25954802 taaagaaattgcccaatttataggagtttatataagaaattcataggaatttacac 25954857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 208 - 363
Target Start/End: Original strand, 34240945 - 34241100
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 307  Q
    ||||||||||||||||||||||||||||||||| |          || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34240945 cagtggcggagccaggaatattgtaaagcccgggcaaaaaaaattttacaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 34241044  T
Q  308 taaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacac 363  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||    
T  34241045 taaagaaattgcccaatttataggggtttatataagaaattcatagggatctacac 34241100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 208 - 428
Target Start/End: Original strand, 52632470 - 52632680
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 307  Q
    ||||||||||||||||||||||||||||||||| |          ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  52632470 cagtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaatattaaaaaatg 52632569  T
Q  308 taaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccg 407  Q
    ||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||                ||||||||||||||| ||| ||||||||    
T  52632570 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttacacaagaaa----------tttggcccggagcccaggcaagtgcccg 52632659  T
Q  408 gggtcgccgggccttagaacc 428  Q
    ||||| |||||||||||||||    
T  52632660 gggtcaccgggccttagaacc 52632680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 209 - 427
Target Start/End: Complemental strand, 46583716 - 46583508
Alignment:
Q  209 agtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 308  Q
    |||||||||| |||||||||||||||| |||| |          || ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  46583716 agtggcggagtcaggaatattgtaaagtccgggcaaaaaaaaatttacaacacatttatatggcgtacataagaaattgcaagcaaataataaaaaatgt 46583617  T
Q  309 aaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccgg 408  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||                |||| ||||||||||||||||||||||||    
T  46583616 aaagaaattgcctaatttataggggtttatataagaaattcatagggatttacac----------aaaaaatttgacccggagcccgggcgagtgcccgg 46583527  T
Q  409 ggtcgccgggccttagaac 427  Q
    ||||||||| |||||||||    
T  46583526 ggtcgccggaccttagaac 46583508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 208 - 363
Target Start/End: Complemental strand, 37801440 - 37801285
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 307  Q
    ||||||||||||||||||||||||||||||||| |          |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37801440 cagtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 37801341  T
Q  308 taaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacac 363  Q
    ||||||| ||||| |||||| |||| ||||||||| ||||||||||  ||||||||    
T  37801340 taaagaatttgcccaatttatagggatttatataaaaaattcatagaaatttacac 37801285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 253 - 432
Target Start/End: Complemental strand, 36012316 - 36012138
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcata 352  Q
    |||||||||||||||| | | ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  36012316 ttgcaacacatttatatgacatacataaaaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 36012217  T
Q  353 gggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 432  Q
    |||||||||||                ||||||||| ||||| | ||||||||| |||||||||||||||||||||||||    
T  36012216 gggatttacacaaaaaattgcaaaaaatttggcccgaagccc-gacgagtgcccagggtcgccgggccttagaaccgccc 36012138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 208 - 319
Target Start/End: Complemental strand, 16338420 - 16338309
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 307  Q
    ||||||||||||||| ||||||||||||||||| |          |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16338420 cagtggcggagccagaaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 16338321  T
Q  308 taaagaaattgc 319  Q
    ||||||||||||    
T  16338320 taaagaaattgc 16338309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 253 - 432
Target Start/End: Complemental strand, 17888683 - 17888502
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||||||||| | ||||||||||||| |||||| ||||| ||||||||||||||||    
T  17888683 ttgcaacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattca 17888584  T
Q  351 tagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 432  Q
    |||| |||||||                 ||||| |||||||||||||||||||||||||||||| |||| |||||||||||    
T  17888583 taggaatttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcccggggtcgcctggccatagaaccgccc 17888502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 206 - 432
Target Start/End: Original strand, 31377339 - 31377565
Alignment:
Q  206 agcagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataat-aaaa 303  Q
    ||||||||||||||||||| ||||||||||||||| |          ||||||||||||||||| ||  |||||||||||||||||||||||| | ||||    
T  31377339 agcagtggcggagccaggattattgtaaagcccgggcaaaaaaaaa-ttgcaacacatttatagcggtttacataagaaattgcaagcaaatagttaaaa 31377437  T
Q  304 aatgtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtg 403  Q
    ||| ||||||||||||| |||||| || || ||||||||||||||||||||||||||||                 ||||| ||||||||||||||||||    
T  31377438 aatctaaagaaattgcccaatttatagagggttatataagaaattcatagggatttaca-taagaaattgaaaaaatttgggccggagcccgggcgagtg 31377536  T
Q  404 cccggggtcgccgggccttagaaccgccc 432  Q
    ||||||||||||||||| |||||||||||    
T  31377537 cccggggtcgccgggccatagaaccgccc 31377565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 279 - 432
Target Start/End: Complemental strand, 16338318 - 16338165
Alignment:
Q  279 aagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnn 378  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||| |||| ||||||||| ||||||||||| ||||||||                   
T  16338318 aagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatataaaaaattcataggaatttacacaaaaaattgcaaaaa 16338219  T
Q  379 ntttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 432  Q
      ||||||||||  |||||||| |||||||||||||||||||||||||||||||    
T  16338218 aattggcccggaatccgggcgaatgcccggggtcgccgggccttagaaccgccc 16338165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 253 - 349
Target Start/End: Complemental strand, 322682 - 322584
Alignment:
Q  253 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattc 349  Q
    |||||||||||||| ||| |  |||||||||||||||||||||||||| ||||||| ||||||||||| | |||||| |||||||||||||||||||||    
T  322682 ttgcaacacatttacaggtgtttacataagaaattgcaagcaaataatcaaaaaatttaaagaaattgtccaatttataggggtttatataagaaattc 322584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 54090176 - 54090286
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaa-ttgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcat 351  Q
    ||||||||||| |||||||  ||||||| ||| |||||||||||||||||||||| |||| |||||||| |||||| | | |||||||||| |||||||     
T  54090176 ttgcaacacatctatagggtttacataaaaaaattgcaagcaaataataaaaaatctaaaaaaattgcccaatttataagagtttatataataaattcag 54090275  T
Q  352 agggatttaca 362  Q
    |||||||||||    
T  54090276 agggatttaca 54090286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 274 - 362
Target Start/End: Original strand, 20818584 - 20818673
Alignment:
Q  274 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttaca 362  Q
    ||||||||||||||||| |||||||| ||||||| |||| |||||| | |||||| ||| ||||||||||||||||||||||||||||||    
T  20818584 tacataagaaattgcaaacaaataatcaaaaaatctaaaaaaattgaccaatttataggagtttatataagaaattcatagggatttaca 20818673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 9742661 - 9742555
Alignment:
Q  258 acacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcataggg 355  Q
    ||||||||||||| |  |||||||||||||||| | ||||||| ||||||| ||||||||||||| |||||| ||||||| |||||||||||||| |||     
T  9742661 acacatttataggtgtttacataagaaattgcatgaaaataatcaaaaaatctaaagaaattgcccaatttataggggttaatataagaaattcagagga 9742562  T
Q  356 atttaca 362  Q
    |||||||    
T  9742561 atttaca 9742555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 11054448 - 11054562
Alignment:
Q  253 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataat---aaaaaatg-taaagaaattgcctaatttacaggggtttatataagaaat 347  Q
    ||||||||||||||||  ||  |||||||||||||||||||||||||    |||||||  |||||| |||||| |||||| || ||||||||||||||||    
T  11054448 ttgcaacacatttataaaggtttacataagaaattgcaagcaaataaataaaaaaaatactaaagagattgcccaatttatagaggtttatataagaaat 11054547  T
Q  348 tcatagggatttaca 362  Q
    |||||||||||||||    
T  11054548 tcatagggatttaca 11054562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 253 - 350
Target Start/End: Complemental strand, 12792364 - 12792265
Alignment:
Q  253 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataata-aaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||||||||||||  |  || |||||||||| ||||||||||||  |||||| ||||| ||||||| |||||| ||||||||||||||||||||||    
T  12792364 ttgcaacacatttatagatgtttatataagaaatttcaagcaaataatctaaaaatctaaagtaattgcccaatttataggggtttatataagaaattca 12792265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 46473989 - 46474100
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataata-aaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||||||||||| ||  | |||||||||||| ||||||||||||| |||||| |||||||||||   |||||| | |||||||||||| |||||||    
T  46473989 ttgcaacacatttataaggatttacataagaaattacaagcaaataatacaaaaatctaaagaaattgtacaatttatatgggtttatataaaaaattca 46474088  T
Q  351 tagggatttaca 362  Q
     ||| |||||||    
T  46474089 caggaatttaca 46474100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 50328791 - 50328902
Alignment:
Q  253 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||||||||||| |||  ||||||| ||||||||||  |||||||||||| | ||||||||||| | |||||| || ||||||||||||||||| |    
T  50328791 ttgcaacacatttataagggtttacataaaaaattgcaagtgaataataaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattaa 50328890  T
Q  351 tagggatttaca 362  Q
     ||| |||||||    
T  50328891 gaggaatttaca 50328902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 274 - 362
Target Start/End: Complemental strand, 19124849 - 19124760
Alignment:
Q  274 tacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttaca 362  Q
    |||||||||||||| ||| ||||||||||||| | |||||||||||   |||||||||  |||||||||||||||||| ||| |||||||    
T  19124849 tacataagaaattgtaagtaaataataaaaaaatttaaagaaattgatcaatttacagatgtttatataagaaattcagaggaatttaca 19124760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 10094495 - 10094427
Alignment:
Q  283 aattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    ||||||||||||||||| ||||||| |||| ||||| || |||||| ||||||||||||||||||||||    
T  10094495 aattgcaagcaaataatcaaaaaatctaaataaattacccaatttataggggtttatataagaaattca 10094427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 253 - 350
Target Start/End: Complemental strand, 35322837 - 35322738
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    ||||||||| |||||||||  | | ||||||||||||||||||||||| ||||||| |||||||||||   |||||| || ||||||||||||| |||||    
T  35322837 ttgcaacacttttataggggtttatataagaaattgcaagcaaataatcaaaaaatctaaagaaattgttcaatttatagaggtttatataagagattca 35322738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 380 - 429
Target Start/End: Complemental strand, 36851391 - 36851342
Alignment:
Q  380 tttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccg 429  Q
    ||||||||||||||| ||||||||||||||||||| |||||||| |||||    
T  36851391 tttggcccggagcccaggcgagtgcccggggtcgctgggccttaaaaccg 36851342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 11054585 - 11054631
Alignment:
Q  386 ccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 432  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||||    
T  11054585 ccggagcccgggtgagtgctcggggtcgccgggccatagaaccgccc 11054631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 350
Target Start/End: Original strand, 47084056 - 47084106
Alignment:
Q  300 aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    ||||||| |||||||||| || |||||| ||||||||||||||||||||||    
T  47084056 aaaaaatctaaagaaattacccaatttataggggtttatataagaaattca 47084106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 433
Target Start/End: Original strand, 25954885 - 25954915
Alignment:
Q  403 gcccggggtcgccgggccttagaaccgccct 433  Q
    |||||||||||||||||||||||||||||||    
T  25954885 gcccggggtcgccgggccttagaaccgccct 25954915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 33981997 - 33982110
Alignment:
Q  253 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaa--taataaaa-aatgtaaagaaattgcctaatttacaggggtttatataagaaatt 348  Q
    |||||||||||||| | |||  ||||||| ||||||||||||||  || ||| | ||| ||||||||||  |||||||| | | ||||||||||||||||    
T  33981997 ttgcaacacatttacatgggtttacataaaaaattgcaagcaaaaatattaatacaatctaaagaaattatctaatttataagagtttatataagaaatt 33982096  T
Q  349 catagggatttaca 362  Q
     | |||||||||||    
T  33982097 tagagggatttaca 33982110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 329 - 363
Target Start/End: Complemental strand, 36851442 - 36851408
Alignment:
Q  329 aggggtttatataagaaattcatagggatttacac 363  Q
    |||||||||||||| ||||||||||||||||||||    
T  36851442 aggggtttatataataaattcatagggatttacac 36851408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 432
Target Start/End: Original strand, 34241128 - 34241157
Alignment:
Q  403 gcccggggtcgccgggccttagaaccgccc 432  Q
    ||||||||||||||||||||||||||||||    
T  34241128 gcccggggtcgccgggccttagaaccgccc 34241157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 5780838 - 5780790
Alignment:
Q  300 aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaatt 348  Q
    ||||||| ||||||||||||| |||||| | || |||||||||||||||    
T  5780838 aaaaaatttaaagaaattgcccaatttataaggatttatataagaaatt 5780790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 1e-67; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 208 - 432
Target Start/End: Original strand, 22324548 - 22324772
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 307  Q
    ||||||||||||||||||||||||||||||||| |          |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22324548 cagtggcggagccaggaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 22324647  T
Q  308 taaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccg 407  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||    
T  22324648 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattacaaaaaatttggcccggagcccgggcgagtgcccg 22324747  T
Q  408 gggtcgccgggccttagaaccgccc 432  Q
    |||| ||||||||||||||||||||    
T  22324748 gggttgccgggccttagaaccgccc 22324772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 206 - 432
Target Start/End: Original strand, 35806744 - 35806970
Alignment:
Q  206 agcagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa 305  Q
    |||||||||||||||||||||||| ||||| |||| |          ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35806744 agcagtggcggagccaggaatattctaaagtccgggcaaaaaaaaatttgcaacacatttatagggtgtacataagaaattgcaagcaaataataaaaaa 35806843  T
Q  306 tgtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcc 405  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||                ||||||||||||||||| ||||||||    
T  35806844 tgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccggagcccggccgagtgcc 35806943  T
Q  406 cggggtcgccgggccttagaaccgccc 432  Q
    |||||||||||||||||||||||||||    
T  35806944 cggggtcgccgggccttagaaccgccc 35806970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 208 - 433
Target Start/End: Original strand, 21525310 - 21525535
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 307  Q
    |||||| ||||||||||||||||||||| |||| |          |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21525310 cagtggtggagccaggaatattgtaaagtccgggcaaaaacaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 21525409  T
Q  308 taaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccg 407  Q
    ||||||||||| | |||||| |||||||||||||||||||||||||||||||||||                |||| |||||||||| ||||||||||||    
T  21525410 taaagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttgacccggagccctggcgagtgcccg 21525509  T
Q  408 gggtcgccgggccttagaaccgccct 433  Q
    ||||| ||||||||||||||||||||    
T  21525510 gggtcaccgggccttagaaccgccct 21525535  T

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Target: chr8; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 211 - 432
Target Start/End: Original strand, 42072383 - 42072604
Alignment:
Q  211 tggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaa 310  Q
    |||||||||||||||||||||||||||||| |          ||||||||||||||||  |  |||||||||||||||||||||||||||||||||||||    
T  42072383 tggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatattgtttacataagaaattgcaagcaaataataaaaaatgtaa 42072482  T
Q  311 agaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccgggg 410  Q
    |||||||| | |||||| |||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||    
T  42072483 agaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccgggg 42072582  T
Q  411 tcgccgggccttagaaccgccc 432  Q
    |||||||||| |||||||||||    
T  42072583 tcgccgggccatagaaccgccc 42072604  T

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Target: chr8; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 253 - 432
Target Start/End: Complemental strand, 33934500 - 33934321
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcata 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| ||||||||||||||||||||||||    
T  33934500 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaaaaaattgcccaatttataggggtttatataagaaattcata 33934401  T
Q  353 gggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 432  Q
    || |||||||                 ||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  33934400 ggaatttacaaaagaaattgcaaaaaatttggcctggagcccgggcgagtgcccggggtcgccgggccttaaaaccgccc 33934321  T

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Target: chr8; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 208 - 432
Target Start/End: Original strand, 42013824 - 42014048
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 307  Q
    ||||||||||||| | ||||||||||||||||| |          || |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42013824 cagtggcggagcctgaaatattgtaaagcccgggcaaaaaaaaaatttcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaata 42013923  T
Q  308 taaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccg 407  Q
    ||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||                ||||||||| | ||||| | ||||||||    
T  42013924 taaagaaattgcccaatttataggagtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccgaaacccggacaagtgcccg 42014023  T
Q  408 gggtcgccgggccttagaaccgccc 432  Q
    |||||||||||||||||||||||||    
T  42014024 gggtcgccgggccttagaaccgccc 42014048  T

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Target: chr8; HSP #7
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 26021392 - 26021502
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcat 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||| |||||||||||||||||||||||    
T  26021392 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaaatgtaaagaaattacccaatttataggggtttatataagaaattcat 26021491  T
Q  352 agggatttaca 362  Q
    |||||||||||    
T  26021492 agggatttaca 26021502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 274 - 360
Target Start/End: Original strand, 24065291 - 24065377
Alignment:
Q  274 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcatagggattta 360  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||| |||||| ||| ||||||||||||||||||||| ||||||    
T  24065291 tacataagaaattgcaagcaaataataaaaaagctaaagaaattgcccaatttataggagtttatataagaaattcatagagattta 24065377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 253 - 352
Target Start/End: Original strand, 19334779 - 19334879
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaa-aatgtaaagaaattgcctaatttacaggggtttatataagaaattcat 351  Q
    |||||||| ||||||||||  |||||||||||||| ||||||||||||||| ||| ||||||||||| |||||||| || ||||||||||| ||||||||    
T  19334779 ttgcaacatatttataggggttacataagaaattgtaagcaaataataaaacaatttaaagaaattgtctaatttatagaggtttatataaaaaattcat 19334878  T
Q  352 a 352  Q
    |    
T  19334879 a 19334879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 21488084 - 21488173
Alignment:
Q  274 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacac 363  Q
    ||||||||||||||||||| |||||| ||||||| ||||||||||| | ||||||  ||||||| ||||||||||||| ||| ||||||||    
T  21488084 tacataagaaattgcaagc-aataataaaaaaatctaaagaaattgtccaatttatcggggtttctataagaaattcaaaggaatttacac 21488173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 253 - 350
Target Start/End: Original strand, 2271197 - 2271289
Alignment:
Q  253 ttgcaacacatttatagggcgt--acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    ||||||||||||||||||| ||  ||||||||||||| |||       |||||||| |||||||||| |||||| || ||||||||||||||||||||||    
T  2271197 ttgcaacacatttatagggggtttacataagaaattgtaag-------taaaaaatctaaagaaattacctaatatataggggtttatataagaaattca 2271289  T

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Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 308 - 362
Target Start/End: Original strand, 16523158 - 16523212
Alignment:
Q  308 taaagaaattgcctaatttacaggggtttatataagaaattcatagggatttaca 362  Q
    ||||||| ||||| |||||| |||| |||||||||||||||||||||||||||||    
T  16523158 taaagaagttgcccaatttatagggatttatataagaaattcatagggatttaca 16523212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 10112042 - 10112153
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||| ||||||||||  | ||||||||||||||||  ||||||| |||||||  |||||||||| | |||||| | | |||||||||||||||| |    
T  10112042 ttgcaacatatttataggggtttacataagaaattgcaaataaataatcaaaaaattaaaagaaattgtccaatttataagagtttatataagaaattaa 10112141  T
Q  351 tagggatttaca 362  Q
     ||| |||||||    
T  10112142 gaggaatttaca 10112153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 26021520 - 26021573
Alignment:
Q  380 tttggcccggagcccgggcgagtgcccggggtcgcc-gggccttagaaccgccc 432  Q
    |||||| |||||||||||| ||||||||||||| || |||||||||||||||||    
T  26021520 tttggcacggagcccgggctagtgcccggggtcaccggggccttagaaccgccc 26021573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 350
Target Start/End: Complemental strand, 43282962 - 43282885
Alignment:
Q  274 tacataagaaattgcaagcaaataataaaaa-atgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||||||| ||||||||||||||||||  | ||| |||||| || |||||| |||| ||||||||| |||||||    
T  43282962 tacataagaaatagcaagcaaataataaaaatttctaatgaaattacccaatttatagggatttatataataaattca 43282885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 305
Target Start/End: Complemental strand, 34697500 - 34697469
Alignment:
Q  274 tacataagaaattgcaagcaaataataaaaaa 305  Q
    ||||||||||||||||||||||||||||||||    
T  34697500 tacataagaaattgcaagcaaataataaaaaa 34697469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 5e-67; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 205 - 432
Target Start/End: Original strand, 34707065 - 34707292
Alignment:
Q  205 tagcagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaa 304  Q
    ||||||||||||||||||||||||| |||||||||| |          ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34707065 tagcagtggcggagccaggaatattctaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaa 34707164  T
Q  305 atgtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgc 404  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||    
T  34707165 atgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgc 34707264  T
Q  405 ccggggtcgccgggccttagaaccgccc 432  Q
    |||||||||||||| |||||||||||||    
T  34707265 ccggggtcgccgggtcttagaaccgccc 34707292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 208 - 432
Target Start/End: Complemental strand, 44164919 - 44164695
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 307  Q
    |||||||||||||||||||||| ||||| |||| |          |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44164919 cagtggcggagccaggaatattctaaagtccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 44164820  T
Q  308 taaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccg 407  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||  ||||||||                ||||||||||||||||||||||||||||    
T  44164819 taaagaaattgcccaatttataggggtttatataagaaattcatagaaatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccg 44164720  T
Q  408 gggtcgccgggccttagaaccgccc 432  Q
    |||||||||||||||||||||||||    
T  44164719 gggtcgccgggccttagaaccgccc 44164695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 208 - 432
Target Start/End: Original strand, 10576625 - 10576849
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 307  Q
    ||||||||||| ||||||||||||||||| ||||           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10576625 cagtggcggagtcaggaatattgtaaagctcggataaaaaaaaatttgcaatacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 10576724  T
Q  308 taaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccg 407  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||                |||||||||||||||||| |||||||||    
T  10576725 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggtgagtgcccg 10576824  T
Q  408 gggtcgccgggccttagaaccgccc 432  Q
    |||||||||| ||||||||||||||    
T  10576825 gggtcgccggaccttagaaccgccc 10576849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 264 - 432
Target Start/End: Original strand, 34259526 - 34259694
Alignment:
Q  264 ttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacac 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  34259526 ttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacac 34259625  T
Q  364 nnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 432  Q
                     |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34259626 aagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggagtcgccgggccttagaaccgccc 34259694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 208 - 432
Target Start/End: Complemental strand, 29556115 - 29555891
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 307  Q
    ||||||||||||||||||||||||||||||| | |          |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29556115 cagtggcggagccaggaatattgtaaagcccaggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 29556016  T
Q  308 taaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccg 407  Q
    ||||||||||| | |||||| |||||||||||||||||||||||||| ||||||||                 ||||||||||| ||||||||||||||     
T  29556015 taaagaaattgtccaatttataggggtttatataagaaattcataggaatttacacaagaaattgtcaaaaaattggcccggaggccgggcgagtgccca 29555916  T
Q  408 gggtcgccgggccttagaaccgccc 432  Q
    ||||||| ||||| |||||||||||    
T  29555915 gggtcgctgggccatagaaccgccc 29555891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 209 - 363
Target Start/End: Complemental strand, 32876705 - 32876551
Alignment:
Q  209 agtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 308  Q
    |||||||||||||||||||||||||||||||| |          ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32876705 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagagcgtacataagaaattgcaagcaaataataaaaaatgt 32876606  T
Q  309 aaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacac 363  Q
    |||||||||| | |||||| ||||||||||||||||||||||||||||| |||||    
T  32876605 aaagaaattgtccaatttataggggtttatataagaaattcatagggatctacac 32876551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 208 - 432
Target Start/End: Complemental strand, 29238319 - 29238095
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 307  Q
    ||||||||||| |||||||||||||||| |||| |          |||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  29238319 cagtggcggagtcaggaatattgtaaagtccgggcaaaaaaaaatttgcaacacatttatagggcctacataagaaattgtaagcaaataataaaaaatg 29238220  T
Q  308 taaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccg 407  Q
    ||||||||||  | |||||  |||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||    
T  29238219 taaagaaattttccaatttttaggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccg 29238120  T
Q  408 gggtcgccgggccttagaaccgccc 432  Q
    |||| ||||||||||||||||||||    
T  29238119 gggttgccgggccttagaaccgccc 29238095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 208 - 363
Target Start/End: Complemental strand, 24320614 - 24320460
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 307  Q
    ||||||||||| ||||||||||||||||||||| |          |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24320614 cagtggcggagtcaggaatattgtaaagcccgggcaaaaaaatt-ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 24320516  T
Q  308 taaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacac 363  Q
    ||||||||||||| |||||| ||||||||||||||||||||| |||| ||||||||    
T  24320515 taaagaaattgcccaatttataggggtttatataagaaattcgtaggaatttacac 24320460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 271 - 432
Target Start/End: Complemental strand, 29981226 - 29981065
Alignment:
Q  271 gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnn 370  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| ||  |||||||||||||||||||||||||||||||           
T  29981226 gcgtacataagaaattgcaagcaaataataaaaaatataaagaaattgtccaatttatagaagtttatataagaaattcatagggatttacacaagaaat 29981127  T
Q  371 nnnnnnnnntttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 432  Q
              ||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  29981126 tgcaaaagaattggcccggagcccgggcgagtgcccgaggtcgccgggtcttagaaccgccc 29981065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 253 - 362
Target Start/End: Complemental strand, 17303248 - 17303136
Alignment:
Q  253 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcctaatttacaggggtttatataagaaattc 349  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||||||||||||  | ||||||||||||| |||||||| |||||||||||||||||||    
T  17303248 ttgcaacacatttatagtggtttacataagaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttacaagggtttatataagaaattc 17303149  T
Q  350 atagggatttaca 362  Q
    ||||| |||||||    
T  17303148 ataggaatttaca 17303136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 253 - 362
Target Start/End: Complemental strand, 33057789 - 33057679
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataa-aaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcat 351  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||| ||||| |||||||||||   |||||| ||||| |||||||||||||||||    
T  33057789 ttgcaacacatttataggatttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgttcaatttataggggattatataagaaattcat 33057690  T
Q  352 agggatttaca 362  Q
    |||||||||||    
T  33057689 agggatttaca 33057679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 209 - 362
Target Start/End: Complemental strand, 19334736 - 19334582
Alignment:
Q  209 agtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa--t 306  Q
    |||||||||||||||| ||||||||||||||| |          |||||||| ||||||||||  || |||||||||||||||||||||||||||||  |    
T  19334736 agtggcggagccaggactattgtaaagcccgggcaaaaaaata-ttgcaacaaatttatagggtttatataagaaattgcaagcaaataataaaaaaaat 19334638  T
Q  307 gtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttaca 362  Q
     ||||||||||| | |||||| |||||||||||||||||||||||||| |||||||    
T  19334637 ctaaagaaattgtccaatttataggggtttatataagaaattcataggtatttaca 19334582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 10334173 - 10334284
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaa-atgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||||||||||||||  | ||||||||||||||||||||||| |||||| || ||||||||||||| |||||| | | ||||||||||||||||||    
T  10334173 ttgcaacacatttataggggtttacataagaaattgcaagcaaatattaaaaatatctaaagaaattgcccaatttataagagtttatataagaaattca 10334272  T
Q  351 tagggatttaca 362  Q
     ||| |||||||    
T  10334273 gaggaatttaca 10334284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 253 - 359
Target Start/End: Complemental strand, 26284510 - 26284404
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcat 351  Q
    |||||||||||||||||||  | ||| ||||||||||||| |||||||||||||| ||||||||||| | |||||| |   |||| |||||||||||||     
T  26284510 ttgcaacacatttataggggtttacaaaagaaattgcaagaaaataataaaaaatctaaagaaattgtccaatttatactagttt-tataagaaattcag 26284412  T
Q  352 agggattt 359  Q
    ||||||||    
T  26284411 agggattt 26284404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 279 - 350
Target Start/End: Original strand, 9770682 - 9770753
Alignment:
Q  279 aagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    ||||||||||||||||||||| |||| | ||||||||||| | |||| | || |||||||||||||||||||    
T  9770682 aagaaattgcaagcaaataatcaaaagtctaaagaaattgtccaattcatagtggtttatataagaaattca 9770753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 362
Target Start/End: Original strand, 15017817 - 15017879
Alignment:
Q  300 aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttaca 362  Q
    ||||||| ||||||||||| | |||||| | | |||||||||||||||||| ||| |||||||    
T  15017817 aaaaaatctaaagaaattgtccaatttatacgcgtttatataagaaattcagaggaatttaca 15017879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 208 - 236
Target Start/End: Original strand, 34259484 - 34259512
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagc 236  Q
    |||||||||||||||||||||||||||||    
T  34259484 cagtggcggagccaggaatattgtaaagc 34259512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 8e-66; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 211 - 432
Target Start/End: Complemental strand, 42769931 - 42769710
Alignment:
Q  211 tggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaa 310  Q
    |||||||||||||||||||||||||||||| |          |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42769931 tggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaa 42769832  T
Q  311 agaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccgggg 410  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||    
T  42769831 agaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccgggg 42769732  T
Q  411 tcgccgggccttagaaccgccc 432  Q
    ||||||||||||||||||||||    
T  42769731 tcgccgggccttagaaccgccc 42769710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 208 - 432
Target Start/End: Complemental strand, 14942220 - 14941996
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 307  Q
    ||||||||||||||||||||||||||||||||| |          |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14942220 cagtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttataaggcgtacataagaaattgcaagcaaataataaaaaatg 14942121  T
Q  308 taaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccg 407  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||| |||    
T  14942120 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgtccg 14942021  T
Q  408 gggtcgccgggccttagaaccgccc 432  Q
    ||||||||| |||||||||||||||    
T  14942020 gggtcgccgagccttagaaccgccc 14941996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 206 - 432
Target Start/End: Complemental strand, 14186616 - 14186390
Alignment:
Q  206 agcagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa 305  Q
    ||||||||||||||||||||||||||||||| ||| |          ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  14186616 agcagtggcggagccaggaatattgtaaagctcgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaag 14186517  T
Q  306 tgtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcc 405  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||                ||||||||||||| ||||||||||||    
T  14186516 tgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattacaaaaaatttggcccggagctcgggcgagtgcc 14186417  T
Q  406 cggggtcgccgggccttagaaccgccc 432  Q
     ||||||||||||||||||||||||||    
T  14186416 tggggtcgccgggccttagaaccgccc 14186390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 207 - 432
Target Start/End: Original strand, 19181499 - 19181724
Alignment:
Q  207 gcagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaat 306  Q
    ||||||||||||||||||||||||||||||||||||          |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19181499 gcagtggcggagccaggaatattgtaaagcccggacaaaaaaaaatttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaat 19181598  T
Q  307 gtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgccc 406  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||                ||||||||  ||||| |||||||| ||    
T  19181599 gtaaagaaattgcccaatttataggggtttatataagaaattcataggaatttacacaagaaattgcaaaaaatttggcccatagcccaggcgagtgtcc 19181698  T
Q  407 ggggtcgccgggccttagaaccgccc 432  Q
    ||||||||||||||||||||||||||    
T  19181699 ggggtcgccgggccttagaaccgccc 19181724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 253 - 432
Target Start/End: Original strand, 29846439 - 29846618
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcata 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||    
T  29846439 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcata 29846538  T
Q  353 gggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 432  Q
    |||||||||||                |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29846539 gggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgtcgggccttagaaccgccc 29846618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 211 - 432
Target Start/End: Complemental strand, 40277461 - 40277240
Alignment:
Q  211 tggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaa 310  Q
    |||||||||||||||||||||||||||||| |          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40277461 tggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaa 40277362  T
Q  311 agaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccgggg 410  Q
    |||||||||| |||||| |||| ||||||||||||||| |||||||||||||                 ||||||||||||||||| | |||||||||||    
T  40277361 agaaattgcccaatttatagggatttatataagaaatttatagggatttacataaaaaattgcaaaaaatttggcccggagcccggacaagtgcccgggg 40277262  T
Q  411 tcgccgggccttagaaccgccc 432  Q
    ||||||||||||||||||||||    
T  40277261 tcgccgggccttagaaccgccc 40277240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 208 - 432
Target Start/End: Original strand, 3956523 - 3956748
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaat 306  Q
    ||||||||||||||||| ||||||||||||||| |          ||||||||||||||||| ||  |||||  ||||||||||||||||||||||||||    
T  3956523 cagtggcggagccaggattattgtaaagcccgggcaaaaaaaaa-ttgcaacacatttatagaggtttacatttgaaattgcaagcaaataataaaaaat 3956621  T
Q  307 gt-aaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcc 405  Q
     | |||||||||| | ||||||||||||||||||||| |||||||||||||||||||                 ||||| ||||||||||||||||||||    
T  3956622 tttaaagaaattgtccaatttacaggggtttatataataaattcatagggatttacataaaaaattgaaaattttttgggccggagcccgggcgagtgcc 3956721  T
Q  406 cggggtcgccgggccttagaaccgccc 432  Q
    ||||||| ||||||| |||||||||||    
T  3956722 cggggtcaccgggccatagaaccgccc 3956748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 253 - 360
Target Start/End: Complemental strand, 1387420 - 1387312
Alignment:
Q  253 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcat 351  Q
    ||||||||||||| || |||  ||||||||||||||||||||||||||||||||| |||||||||| || |||||| |||||||||| ||||||||||||    
T  1387420 ttgcaacacatttgtaagggtttacataagaaattgcaagcaaataataaaaaatctaaagaaattacccaatttataggggtttatctaagaaattcat 1387321  T
Q  352 agggattta 360  Q
    |||||||||    
T  1387320 agggattta 1387312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 253 - 362
Target Start/End: Complemental strand, 6318592 - 6318480
Alignment:
Q  253 ttgcaacacatttataggg-cgtacataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcctaatttacaggggtttatataagaaattc 349  Q
    ||||||||||||||||||| | |||||  |||||||||||||||||||||||||  | ||||||||||||| |||||| |||| ||||||||||||||||    
T  6318592 ttgcaacacatttataggggcttacatttgaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttatagggatttatataagaaattc 6318493  T
Q  350 atagggatttaca 362  Q
    |||||||||||||    
T  6318492 atagggatttaca 6318480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 253 - 348
Target Start/End: Complemental strand, 3597998 - 3597903
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaatt 348  Q
    |||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| | |||||| |||| |||| | ||||||||    
T  3597998 ttgcaatacatttatagggcgtacgtaagaaattgcaagtaaataataaaaaatgtaaagaaattgtccaatttatagggatttacacaagaaatt 3597903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 253 - 350
Target Start/End: Complemental strand, 14539837 - 14539738
Alignment:
Q  253 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||||||||||||| |  || ||||||||||||||| ||||||||||||| | |||||||||||||||||||| |||  |||||||||||||||||    
T  14539837 ttgcaacacatttataggtgtttatataagaaattgcaagaaaataataaaaaaatctaaagaaattgcctaatttataggaatttatataagaaattca 14539738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 380 - 432
Target Start/End: Complemental strand, 3597894 - 3597842
Alignment:
Q  380 tttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 432  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3597894 tttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgccc 3597842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 40780050 - 40780162
Alignment:
Q  253 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataa-taaaaaatgtaaagaaattgcctaatttacaggg-gtttatataagaaattc 349  Q
    |||||||| |||||||| ||  ||||||||||||||||||||||||| |||||||| |||| |||||| | |||||| |||| |||||||||||||||||    
T  40780050 ttgcaacatatttatagcggtttacataagaaattgcaagcaaataattaaaaaatttaaaaaaattgtcaaatttatagggtgtttatataagaaattc 40780149  T
Q  350 atagggatttaca 362  Q
    | ||| |||||||    
T  40780150 agaggaatttaca 40780162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 253 - 360
Target Start/End: Original strand, 33009667 - 33009777
Alignment:
Q  253 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataa--aaaatgtaaagaaattgcctaatttacaggggtttatataagaaattc 349  Q
    ||||||||| |||||| |||  ||||||| ||||||||||||||||||||  ||||| ||||||||||| | |||||| | || ||||||||| ||||||    
T  33009667 ttgcaacacgtttatatgggtttacataaaaaattgcaagcaaataataataaaaatctaaagaaattgtccaatttataaggatttatataacaaattc 33009766  T
Q  350 atagggattta 360  Q
    |||||||||||    
T  33009767 atagggattta 33009777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 277 - 348
Target Start/End: Original strand, 43139766 - 43139839
Alignment:
Q  277 ataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcctaatttacaggggtttatataagaaatt 348  Q
    |||||||||||||||||||||||||||||  | ||||||||||||  |||||| ||||||||||||||||||||    
T  43139766 ataagaaattgcaagcaaataataaaaaaaatctaaagaaattgctcaatttataggggtttatataagaaatt 43139839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 253 - 362
Target Start/End: Complemental strand, 41674840 - 41674728
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat--aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattc 349  Q
    |||||||||||||||||||  | | ||||||||||||||||||||| |  ||||||| ||||||||||| | |||||| | |||||||||||| ||||||    
T  41674840 ttgcaacacatttatagggatttatataagaaattgcaagcaaatagttaaaaaaatctaaagaaattgtccaatttataagggtttatataaaaaattc 41674741  T
Q  350 atagggatttaca 362  Q
    | || ||||||||    
T  41674740 agagagatttaca 41674728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 253 - 350
Target Start/End: Complemental strand, 28321836 - 28321737
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||||||||||||||  | | ||||||||||| ||||||||||| |||||||  || ||||||||| |||||| | |||||||||||||| |||||    
T  28321836 ttgcaacacatttataggggtttatataagaaattggaagcaaataatcaaaaaattcaatgaaattgcccaatttataagggtttatataagatattca 28321737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 253 - 348
Target Start/End: Complemental strand, 23685503 - 23685406
Alignment:
Q  253 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaatt 348  Q
    |||||||| ||||||| |||  |||||||||||||||||||||||||| |||| || |||| |||||| | |||||| | || |||||||||||||||    
T  23685503 ttgcaacatatttataagggtttacataagaaattgcaagcaaataatcaaaatatataaataaattgtcaaatttataaggatttatataagaaatt 23685406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 432
Target Start/End: Complemental strand, 1386157 - 1386114
Alignment:
Q  389 gagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 432  Q
    ||||||||||||||||||||||||| || ||| |||||||||||    
T  1386157 gagcccgggcgagtgcccggggtcgtcgagccatagaaccgccc 1386114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 432
Target Start/End: Complemental strand, 28321704 - 28321667
Alignment:
Q  395 gggcgagtgcccggggtcgccgggccttagaaccgccc 432  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  28321704 gggcaagtgcccgggctcgccgggccttagaaccgccc 28321667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 277 - 348
Target Start/End: Original strand, 25665244 - 25665316
Alignment:
Q  277 ataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaatt 348  Q
    |||| |||||||||||||||||| ||||||  |||||||||| || |||||| |   ||||||||||||||||    
T  25665244 ataaaaaattgcaagcaaataatcaaaaaacttaaagaaattacccaatttataaatgtttatataagaaatt 25665316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 211 - 239
Target Start/End: Original strand, 29846396 - 29846424
Alignment:
Q  211 tggcggagccaggaatattgtaaagcccg 239  Q
    |||||||||||||||||||||||||||||    
T  29846396 tggcggagccaggaatattgtaaagcccg 29846424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 253 - 335
Target Start/End: Original strand, 32486239 - 32486323
Alignment:
Q  253 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataa-taaaaaatgtaaagaaattgcctaatttacaggggtt 335  Q
    |||||||||||||||| | |  || |||||||||||||||||||||| |||||||| | || ||||| || |||||| |||||||    
T  32486239 ttgcaacacatttataagtgtttatataagaaattgcaagcaaataattaaaaaatcttaaaaaattacccaatttataggggtt 32486323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 1e-64; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 201 - 432
Target Start/End: Complemental strand, 37169216 - 37168985
Alignment:
Q  201 atgttagcagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataata 300  Q
    |||| ||||||||| ||||||||||||||||||||||||| |          |||| |||||||||||||||||||||||||||||||||||||||||||    
T  37169216 atgtgagcagtggcagagccaggaatattgtaaagcccgggcaaaaaaaaatttgccacacatttatagggcgtacataagaaattgcaagcaaataata 37169117  T
Q  301 aaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcga 400  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||                ||||||||||||||||||| |    
T  37169116 aaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaattgcaaaaaatttggcccggagcccgggcaa 37169017  T
Q  401 gtgcccggggtcgccgggccttagaaccgccc 432  Q
    ||||||||||||||||||||||||||||||||    
T  37169016 gtgcccggggtcgccgggccttagaaccgccc 37168985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 208 - 432
Target Start/End: Original strand, 23218437 - 23218661
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 307  Q
    ||||||||||||||||||||||||||||||||| |          ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23218437 cagtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggagtacataagaaattgcaagcaaataataaaaaatg 23218536  T
Q  308 taaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccg 407  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||                ||||||||||| ||||||||||||||||    
T  23218537 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaactttggcccggaacccgggcgagtgcccg 23218636  T
Q  408 gggtcgccgggccttagaaccgccc 432  Q
    || ||||||||||||||||||||||    
T  23218637 ggatcgccgggccttagaaccgccc 23218661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 208 - 431
Target Start/End: Original strand, 38397550 - 38397773
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 307  Q
    |||||||||||||||||||||| ||||||| || |          |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38397550 cagtggcggagccaggaatattataaagcctgggcaaaaaacaaattgcaacacatttataggacgtacataagaaattgcaagcaaataataaaaaatg 38397649  T
Q  308 taaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccg 407  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||    
T  38397650 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccg 38397749  T
Q  408 gggtcgccgggccttagaaccgcc 431  Q
    ||||||||||||||||||||||||    
T  38397750 gggtcgccgggccttagaaccgcc 38397773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 214 - 432
Target Start/End: Complemental strand, 6257580 - 6257362
Alignment:
Q  214 cggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaaga 313  Q
    |||||||||||||||||||||| |||| |          ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6257580 cggagccaggaatattgtaaagtccgggcaaaaaaaattttgcaacacatttatagggcgtatataagaaattgcaagcaaataataaaaaatgtaaaga 6257481  T
Q  314 aattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccggggtcg 413  Q
    ||||||| |||||| |||||||| ||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||    
T  6257480 aattgcccaatttataggggtttgtataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcg 6257381  T
Q  414 ccgggccttagaaccgccc 432  Q
    |||||||||||||||||||    
T  6257380 ccgggccttagaaccgccc 6257362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 253 - 432
Target Start/End: Complemental strand, 16618701 - 16618522
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcata 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| | |||||| ||| ||||||||||||||||||||    
T  16618701 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaaaaaattgtccaatttataggagtttatataagaaattcata 16618602  T
Q  353 gggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 432  Q
    |||||||||||                ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16618601 gggatttacacaagaaattgtaaaaaatttggcccggagcccggacgagtgcccggggtcgccgggccttagaaccgccc 16618522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 212 - 432
Target Start/End: Complemental strand, 39862659 - 39862439
Alignment:
Q  212 ggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaa 311  Q
    |||||||||||||||||||||||||| || |          ||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||    
T  39862659 ggcggagccaggaatattgtaaagcctgggcaaaaaaaaatttgcaacacatttttagggcgtatataagaaattgcaagcaaataataaaaaatctaaa 39862560  T
Q  312 gaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccggggt 411  Q
    ||||||||| |||||| |||||||||||||||||||||||||| ||||||||                 |||||||||||| ||||||||||||||||||    
T  39862559 gaaattgcccaatttataggggtttatataagaaattcataggaatttacacaagaaattgcaaaaaaattggcccggagctcgggcgagtgcccggggt 39862460  T
Q  412 cgccgggccttagaaccgccc 432  Q
    |||||||||||||||||||||    
T  39862459 cgccgggccttagaaccgccc 39862439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 211 - 432
Target Start/End: Original strand, 15631568 - 15631790
Alignment:
Q  211 tggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaa 310  Q
    |||||||||||||||||||||||||||| | |          || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15631568 tggcggagccaggaatattgtaaagcccaggcaaaaaaaaatttacaacgcatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaa 15631667  T
Q  311 agaaattgcctaatttaca-ggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccggg 409  Q
    |||||||| | |||||| | ||||||||||||||||||||||||||||||| ||                ||||||| ||||||||||||||||||||||    
T  15631668 agaaattgtccaatttatagggggtttatataagaaattcatagggatttatacaagaaattgtaaaaaatttggcctggagcccgggcgagtgcccggg 15631767  T
Q  410 gtcgccgggccttagaaccgccc 432  Q
    |||||||||||||||||||||||    
T  15631768 gtcgccgggccttagaaccgccc 15631790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 206 - 362
Target Start/End: Original strand, 10081094 - 10081251
Alignment:
Q  206 agcagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaa 304  Q
    ||||||||||||||||||| ||||||||||||||| |          |||||||||||||||||| |  |||||||||||||| ||||||||||||||||    
T  10081094 agcagtggcggagccaggattattgtaaagcccgggcaaaaaaaaa-ttgcaacacatttataggagtttacataagaaattgtaagcaaataataaaaa 10081192  T
Q  305 a-tgtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttaca 362  Q
    | | ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  10081193 aatctaaagaaattgcccaatttataggggtttatataagaaattcatagggatttaca 10081251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 253 - 432
Target Start/End: Complemental strand, 8457096 - 8456915
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||| ||||||||||  | ||||||||||||||||||||||||||||||| | ||||||||||||| |||||| ||||| ||||||||||||||||    
T  8457096 ttgcaacatatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattca 8456997  T
Q  351 tagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 432  Q
    ||||||||||||                 ||||| |||||||||||||||||||  |||||||||||||| |||||||||||    
T  8456996 tagggatttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcatggggtcgccgggccatagaaccgccc 8456915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 253 - 362
Target Start/End: Complemental strand, 36769206 - 36769096
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcat 351  Q
    |||||||||||||||||||  | ||||| ||||||||||||||||||| |||||| |||||||||||||||||| | || |||||||||||||||||||     
T  36769206 ttgcaacacatttataggggtttacatatgaaattgcaagcaaataatcaaaaatctaaagaaattgcctaattcatagaggtttatataagaaattcag 36769107  T
Q  352 agggatttaca 362  Q
    ||| |||||||    
T  36769106 aggaatttaca 36769096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 256 - 362
Target Start/End: Complemental strand, 614522 - 614414
Alignment:
Q  256 caacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcctaatttacaggggtttatataagaaattcatag 353  Q
    ||||||||||||||| |  |||||||||||||||||||||||||||||||| | ||||||||||||| |||||| |||| ||||||||| ||||||| ||    
T  614522 caacacatttataggtgtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgccaaatttatagggatttatataaaaaattcagag 614423  T
Q  354 ggatttaca 362  Q
    | |||||||    
T  614422 gaatttaca 614414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 211 - 359
Target Start/End: Complemental strand, 9738156 - 9738008
Alignment:
Q  211 tggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgt 308  Q
    |||||||||||||| |||||||||||||||||          ||||| | |||||||||||  | ||||||||||||||||||||||||  ||||||| |    
T  9738156 tggcggagccaggattattgtaaagcccggacaaaaaaaa--ttgcatcgcatttataggggtttacataagaaattgcaagcaaataaacaaaaaatct 9738059  T
Q  309 aaagaaattgcctaatttacaggggtttatataagaaattcatagggattt 359  Q
    |||||||||| | |||||| |||| ||||||||||||||||||||||||||    
T  9738058 aaagaaattgtccaatttatagggatttatataagaaattcatagggattt 9738008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 253 - 362
Target Start/End: Complemental strand, 25560460 - 25560349
Alignment:
Q  253 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataaaa-aatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||||||||||| |||  |||||||||||||||||||||||||||||| ||| ||||||||||| | |||||| ||  |||||||||||||||| |    
T  25560460 ttgcaacacatttatatgggtttacataagaaattgcaagcaaataataaaataatctaaagaaattgtccaatttatagatgtttatataagaaattta 25560361  T
Q  351 tagggatttaca 362  Q
    || |||||||||    
T  25560360 taaggatttaca 25560349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 11856290 - 11856401
Alignment:
Q  253 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||| ||||||||| |  |||||||||||||||||| ||||||| ||||||| ||||||||||||| |||||| || | |||||||||||||||||    
T  11856290 ttgcaacatatttataggagtttacataagaaattgcaagtaaataatcaaaaaatctaaagaaattgcccaatttatagtgatttatataagaaattca 11856389  T
Q  351 tagggatttaca 362  Q
     || ||||||||    
T  11856390 gagcgatttaca 11856401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 42119617 - 42119728
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||||||||||||||  | |||||||||||| ||| |||||||||||||| | ||||||||||| | |||||| || |||||||||||||||||||    
T  42119617 ttgcaacacatttataggggtttacataagaaattacaaacaaataataaaaaaatctaaagaaattgtccaatttatagaggtttatataagaaattca 42119716  T
Q  351 tagggatttaca 362  Q
     ||| |||||||    
T  42119717 gaggaatttaca 42119728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 274 - 350
Target Start/End: Original strand, 6174762 - 6174840
Alignment:
Q  274 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttaca--ggggtttatataagaaattca 350  Q
    |||||| |||||||||||||||||||||||||| ||||||||||| | |||||| |  |||||||||||||||||||||    
T  6174762 tacataggaaattgcaagcaaataataaaaaatataaagaaattgtccaatttataggggggtttatataagaaattca 6174840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 282 - 362
Target Start/End: Original strand, 10115185 - 10115266
Alignment:
Q  282 aaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttaca 362  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||||||  |||||||||||||||||| || ||| |||||||    
T  10115185 aaattgcaagcaaataattaaaaaatctaaagaaattgtctaatttattggggtttatataagaaatccagaggaatttaca 10115266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 27916134 - 27916246
Alignment:
Q  253 ttgcaacacatttatagggcgt--acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcctaatttacaggggtttatataagaaattc 349  Q
    ||||||||||||||||||  ||  | |||||||||||||| |||||||||||||| | ||| ||||||||  |||||| ||| |||||||||||||||||    
T  27916134 ttgcaacacatttataggaggtttatataagaaattgcaaacaaataataaaaaaatctaatgaaattgctcaatttataggagtttatataagaaattc 27916233  T
Q  350 atagggatttaca 362  Q
    | ||| |||||||    
T  27916234 agaggaatttaca 27916246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 277 - 350
Target Start/End: Complemental strand, 33271377 - 33271304
Alignment:
Q  277 ataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||||| ||| ||||||||||||||| ||||||||||| | |||||| || |||||||||||||||||||    
T  33271377 ataagaaattacaaacaaataataaaaaatataaagaaattgtccaatttatagaggtttatataagaaattca 33271304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 213 - 362
Target Start/End: Complemental strand, 29491585 - 29491436
Alignment:
Q  213 gcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaa 310  Q
    |||||||||||| ||||||||||||||| |          |||||||||||||||| | |  | |||||||||||||||||||||||| ||||||| |||    
T  29491585 gcggagccaggattattgtaaagcccgggcaaaaaaaaaattgcaacacatttatatgtgtttgcataagaaattgcaagcaaataatcaaaaaatttaa 29491486  T
Q  311 agaaattgcctaatttacaggggtttatataagaaattcatagggatttaca 362  Q
    || ||||| | |||||| ||||| |||||||||||||||||||  |||||||    
T  29491485 ag-aattgtccaatttatagggg-ttatataagaaattcatagaaatttaca 29491436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 274 - 362
Target Start/End: Complemental strand, 29790328 - 29790241
Alignment:
Q  274 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttaca 362  Q
    |||||||||||||  ||||||||||| |||||  ||||||||||||| |||||| |  ||||||||||||||||||||| | |||||||    
T  29790328 tacataagaaattaaaagcaaataatcaaaaac-taaagaaattgcccaatttataaaggtttatataagaaattcataagaatttaca 29790241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 279 - 362
Target Start/End: Complemental strand, 10052606 - 10052522
Alignment:
Q  279 aagaaattgcaagcaaataataaaaaatgt-aaagaaattgcctaatttacaggggtttatataagaaattcatagggatttaca 362  Q
    |||||||||||||||||||||  ||||| | ||||||||| ||||||||| ||  ||||||||||| | |||| |||||||||||    
T  10052606 aagaaattgcaagcaaataatctaaaattttaaagaaattacctaatttatagacgtttatataagtagttcagagggatttaca 10052522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 3341230 - 3341162
Alignment:
Q  274 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataa 342  Q
    ||||||| |||||| ||||||||||| |||||  |||||||||| || |||||| ||||| ||||||||    
T  3341230 tacataaaaaattgaaagcaaataatcaaaaagctaaagaaatttcccaatttataggggattatataa 3341162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 432
Target Start/End: Original strand, 10081272 - 10081323
Alignment:
Q  381 ttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 432  Q
    |||| || ||||||||||||||||| ||| |||||||||| |||||||||||    
T  10081272 ttgggccagagcccgggcgagtgcctgggatcgccgggccatagaaccgccc 10081323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 320
Target Start/End: Complemental strand, 33188451 - 33188406
Alignment:
Q  275 acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcc 320  Q
    |||||||||||| ||||||||||||||||||| ||  |||||||||    
T  33188451 acataagaaattacaagcaaataataaaaaatttattgaaattgcc 33188406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 19322106 - 19322058
Alignment:
Q  300 aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaatt 348  Q
    ||||||| ||||| ||||||| |||||| ||| ||||||||||||||||    
T  19322106 aaaaaatctaaagtaattgcccaatttataggagtttatataagaaatt 19322058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 8e-63; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 208 - 432
Target Start/End: Complemental strand, 24694827 - 24694603
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 307  Q
    ||||||||||||||||||||||||||||||||| |          |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24694827 cagtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 24694728  T
Q  308 taaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccg 407  Q
    ||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||     
T  24694727 taaagaaattgcccaatttataggagtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgccca 24694628  T
Q  408 gggtcgccgggccttagaaccgccc 432  Q
    |||| ||||||||||||||||||||    
T  24694627 gggttgccgggccttagaaccgccc 24694603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 207 - 432
Target Start/End: Complemental strand, 9232031 - 9231806
Alignment:
Q  207 gcagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaat 306  Q
    |||||||||||||||||||||||||||||||||| |          |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9232031 gcagtggcggagccaggaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaat 9231932  T
Q  307 gtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgccc 406  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||                 ||||||||||||||||||||||||||    
T  9231931 gtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgccc 9231832  T
Q  407 ggggtcgccgggccttagaaccgccc 432  Q
    |||||||||| |||||||||||||||    
T  9231831 ggggtcgccgagccttagaaccgccc 9231806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 253 - 363
Target Start/End: Complemental strand, 14309929 - 14309819
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcata 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||    
T  14309929 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcata 14309830  T
Q  353 gggatttacac 363  Q
    |||||||||||    
T  14309829 gggatttacac 14309819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 209 - 432
Target Start/End: Original strand, 13627494 - 13627716
Alignment:
Q  209 agtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 308  Q
    ||||||||||||||||||||| |||||||||| |          |||||||| ||||||||| ||||||||||||| | |||||||||||||||||||||    
T  13627494 agtggcggagccaggaatattctaaagcccgggcaaaaaaatt-ttgcaacatatttataggacgtacataagaaagtacaagcaaataataaaaaatgt 13627592  T
Q  309 aaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccgg 408  Q
    |||||||||||  |||||| |||||||||||||||||||||||||||||||||||                ||||||||||||||||| |||||||  ||    
T  13627593 aaagaaattgctcaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccggacgagtgcttgg 13627692  T
Q  409 ggtcgccgggccttagaaccgccc 432  Q
    ||||||||||||||||||||||||    
T  13627693 ggtcgccgggccttagaaccgccc 13627716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 282 - 363
Target Start/End: Complemental strand, 1728035 - 1727954
Alignment:
Q  282 aaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacac 363  Q
    |||||||||| |||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||    
T  1728035 aaattgcaaggaaataataaaaaatgtaaagaaattgctcaatttataggggtttatataagaaattcatagggatttacac 1727954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 206 - 305
Target Start/End: Original strand, 11084560 - 11084659
Alignment:
Q  206 agcagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa 305  Q
    |||||||||||||||||||||||||||||| |||| |          |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11084560 agcagtggcggagccaggaatattgtaaagtccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa 11084659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 274 - 362
Target Start/End: Original strand, 34103703 - 34103791
Alignment:
Q  274 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttaca 362  Q
    ||||||||||||||||| ||||||||||||||| |||||||||| || |||||| | |||||||||||||||||||| ||| |||||||    
T  34103703 tacataagaaattgcaaacaaataataaaaaatctaaagaaatttcccaatttatacgggtttatataagaaattcagaggaatttaca 34103791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 253 - 350
Target Start/End: Original strand, 27863695 - 27863793
Alignment:
Q  253 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||||||||||||  |  ||||||||||||||||| ||||||||||||||| ||||||||||| | |||||| | ||||||||||||||||||||    
T  27863695 ttgcaacacatttatagatgtttacataagaaattgcaaacaaataataaaaaatctaaagaaattgtccaatttataagggtttatataagaaattca 27863793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 253 - 350
Target Start/End: Complemental strand, 28750783 - 28750684
Alignment:
Q  253 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||||||||||| | |  ||||||||||||| |||||||||||| ||||||  ||||||||||||| |||||| ||||||||||||||||||||||    
T  28750783 ttgcaacacatttataagagtttacataagaaattacaagcaaataatcaaaaaaattaaagaaattgcccaatttataggggtttatataagaaattca 28750684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 13103246 - 13103140
Alignment:
Q  258 acacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcataggg 355  Q
    ||||||||||||| |  ||||| |||||||||||||||||||| ||||||| ||||||||||||| |||||| |  ||||||||||||||||||| |||     
T  13103246 acacatttataggtgtttacattagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttataaaggtttatataagaaattcagagga 13103147  T
Q  356 atttaca 362  Q
    |||||||    
T  13103146 atttaca 13103140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 253 - 350
Target Start/End: Original strand, 11279536 - 11279634
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    ||||||||||||||||| |  | |||||||||||||||||||||||||||||||| |||||||||| || |||||| | |  ||||||||| |||||||    
T  11279536 ttgcaacacatttatagagatttacataagaaattgcaagcaaataataaaaaatctaaagaaattaccaaatttataagaatttatataaaaaattca 11279634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 274 - 350
Target Start/End: Original strand, 11212689 - 11212765
Alignment:
Q  274 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    ||||||||||||| |||||||||||| |||||| ||||||||||||| |||||| |||| |||||| || |||||||    
T  11212689 tacataagaaattacaagcaaataattaaaaatctaaagaaattgcccaatttatagggatttatagaaaaaattca 11212765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 363
Target Start/End: Complemental strand, 24497646 - 24497595
Alignment:
Q  312 gaaattgcctaatttacaggggtttatataagaaattcatagggatttacac 363  Q
    ||||||||| |||||| |||||||||||||||||||||| ||| ||||||||    
T  24497646 gaaattgcccaatttataggggtttatataagaaattcagaggaatttacac 24497595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 432
Target Start/End: Original strand, 11084715 - 11084765
Alignment:
Q  381 ttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 432  Q
    ||||| |||| ||||||||| ||||||||||| |||||||||||||||||||    
T  11084715 ttggctcggaacccgggcga-tgcccggggtcaccgggccttagaaccgccc 11084765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 24500830 - 24500767
Alignment:
Q  256 caacacatttata-gggcgtacataagaaattgcaagcaaataataa-aaaatgtaaagaaatt 317  Q
    ||||||||||||| |||  |||||| ||||||||||||||||||||| ||||| ||||||||||    
T  24500830 caacacatttataagggtttacatatgaaattgcaagcaaataataaaaaaatctaaagaaatt 24500767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 34383409 - 34383363
Alignment:
Q  386 ccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 432  Q
    ||||||||||||||| | |||||||||||| |||| |||||||||||    
T  34383409 ccggagcccgggcgaatacccggggtcgccaggccatagaaccgccc 34383363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 363
Target Start/End: Original strand, 11084664 - 11084697
Alignment:
Q  330 ggggtttatataagaaattcatagggatttacac 363  Q
    ||||||||||||||||||||||||| ||||||||    
T  11084664 ggggtttatataagaaattcataggaatttacac 11084697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 1728073 - 1728041
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccgg 240  Q
    |||||||||||||| ||||||||||||||||||    
T  1728073 cagtggcggagccaagaatattgtaaagcccgg 1728041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 8412757 - 8412717
Alignment:
Q  308 taaagaaattgcctaatttacaggggtttatataagaaatt 348  Q
    ||||||||||||| |||||| ||| ||||||||||||||||    
T  8412757 taaagaaattgcccaatttataggcgtttatataagaaatt 8412717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 5e-61; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 208 - 432
Target Start/End: Original strand, 21853148 - 21853373
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnn-ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaat 306  Q
    ||||||||||||||||||||||||||||||| |||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21853148 cagtggcggagccaggaatattgtaaagcccagacaaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaat 21853247  T
Q  307 gtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgccc 406  Q
    |||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||                ||||||||||||||||| |||||||||    
T  21853248 gtaaagaaattgcccaatttatagggttttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccggccgagtgccc 21853347  T
Q  407 ggggtcgccgggccttagaaccgccc 432  Q
    ||||||||||||||||||||||||||    
T  21853348 ggggtcgccgggccttagaaccgccc 21853373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 211 - 432
Target Start/End: Complemental strand, 40846090 - 40845869
Alignment:
Q  211 tggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaa 310  Q
    |||||||||||||||||||||||||||||| |          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40846090 tggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaa 40845991  T
Q  311 agaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccgggg 410  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||                |||| |||||| ||||||||| |||||| ||    
T  40845990 agaaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaattgcaaaaaatttgacccggaacccgggcgaatgcccgagg 40845891  T
Q  411 tcgccgggccttagaaccgccc 432  Q
    ||||||||||||||||||||||    
T  40845890 tcgccgggccttagaaccgccc 40845869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 208 - 432
Target Start/End: Complemental strand, 44995145 - 44994920
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 307  Q
    ||||||||||||||||||||| ||||||||||| |          |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44995145 cagtggcggagccaggaatatagtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 44995046  T
Q  308 taaagaaattgcctaattta-caggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgccc 406  Q
    ||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||                |||||||||||||||| |||||| |||    
T  44995045 taaagaaattgcccaatttataaggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgagcgagtaccc 44994946  T
Q  407 ggggtcgccgggccttagaaccgccc 432  Q
    ||||||||||||||||||||||||||    
T  44994945 ggggtcgccgggccttagaaccgccc 44994920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 209 - 432
Target Start/End: Original strand, 13856052 - 13856275
Alignment:
Q  209 agtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 308  Q
    |||||||||||||||||||||||||||||| | |          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13856052 agtggcggagccaggaatattgtaaagcccaggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 13856151  T
Q  309 aaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccgg 408  Q
    |||||||||| | |||||| |||| ||||||||||||||||||||||||||||||                ||||||||||||||||||| ||||||| |    
T  13856152 aaagaaattgtccaatttatagggatttatataagaaattcatagggatttacacaagaaattgaaaaaaatttggcccggagcccgggcaagtgccctg 13856251  T
Q  409 ggtcgccgggccttagaaccgccc 432  Q
    ||||||||||||||||||||||||    
T  13856252 ggtcgccgggccttagaaccgccc 13856275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 208 - 432
Target Start/End: Original strand, 5391410 - 5391633
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 307  Q
    ||||||||||||||||||||||||||||||||| |          |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5391410 cagtggcggagccaggaatattgtaaagcccgggcaaaaaaaat-ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 5391508  T
Q  308 taaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccg 407  Q
    ||||||||||| | |||||| |||||||||||||||||||||||||||||||||||                 ||||| ||||||||||||||||||||     
T  5391509 taaagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattgtcaaaaaattggcgcggagcccgggcgagtgccca 5391608  T
Q  408 gggtcgccgggccttagaaccgccc 432  Q
    ||||||||||||| |||||||||||    
T  5391609 gggtcgccgggccatagaaccgccc 5391633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 208 - 363
Target Start/End: Complemental strand, 23467671 - 23467515
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggac-nnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaat 306  Q
    |||||||||||||||||||||||||||||| || |           ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23467671 cagtggcggagccaggaatattgtaaagcctgggcggaaaatttttttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaat 23467572  T
Q  307 gtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacac 363  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  23467571 gtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacac 23467515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 209 - 432
Target Start/End: Complemental strand, 8950679 - 8950456
Alignment:
Q  209 agtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgt 308  Q
    |||||||||||||||||||||||||||  ||| |          |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  8950679 agtggcggagccaggaatattgtaaagttcgggcaaaaaaaaatttgcaacatatttatagggcgtacataagaaatttcaagcaaataataaaaaatgt 8950580  T
Q  309 aaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccgg 408  Q
    |||||||||||| |||||| |||| ||||||||||||||||||||| ||||||||                |||||||| ||||||||||||||||||||    
T  8950579 aaagaaattgcccaatttatagggatttatataagaaattcataggaatttacacaagaaattgcaaaaaatttggcccagagcccgggcgagtgcccgg 8950480  T
Q  409 ggtcgccgggccttagaaccgccc 432  Q
    ||||||| ||||||||||||||||    
T  8950479 ggtcgccaggccttagaaccgccc 8950456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 253 - 360
Target Start/End: Original strand, 32352844 - 32352951
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcata 352  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32352844 ttgcaacacatttatagggcgtacataagaaattgtaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcata 32352943  T
Q  353 gggattta 360  Q
    ||||||||    
T  32352944 gggattta 32352951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 20382514 - 20382625
Alignment:
Q  253 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    ||||||| |||||||||| |  |||||||||||||||||||||||||||||||| | |||||||||| || |||||| ||||||||||||||||||||||    
T  20382514 ttgcaacgcatttataggagtttacataagaaattgcaagcaaataataaaaaaatctaaagaaatttcccaatttataggggtttatataagaaattca 20382613  T
Q  351 tagggatttaca 362  Q
    ||||||||||||    
T  20382614 tagggatttaca 20382625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 1781757 - 1781868
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||||||||||||||  | ||||| ||||||||||||||||||| ||||||| ||||||||||||| ||||||  |||||||||||||||||||||    
T  1781757 ttgcaacacatttataggggtttacatacgaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttattggggtttatataagaaattca 1781856  T
Q  351 tagggatttaca 362  Q
     |||||||||||    
T  1781857 gagggatttaca 1781868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 253 - 362
Target Start/End: Complemental strand, 43347468 - 43347358
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcat 351  Q
    |||||||| | ||||||||  |||||||||||||||||||||||||| ||||||| ||||||||||||| |||||  ||||||||||||||||||||||     
T  43347468 ttgcaacataattatagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttgtaggggtttatataagaaattcag 43347369  T
Q  352 agggatttaca 362  Q
    ||| |||||||    
T  43347368 aggaatttaca 43347358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 253 - 362
Target Start/End: Complemental strand, 19649506 - 19649394
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat--aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattc 349  Q
    |||||||||||||||||||  | |||||||||||||||||||||||||  ||||||| ||||||||||| | |||||| | |||||||||||||||||||    
T  19649506 ttgcaacacatttatagggaattacataagaaattgcaagcaaataatccaaaaaatctaaagaaattgtccaatttataagggtttatataagaaattc 19649407  T
Q  350 atagggatttaca 362  Q
    |||| ||||||||    
T  19649406 atagcgatttaca 19649394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 253 - 363
Target Start/End: Original strand, 3178699 - 3178810
Alignment:
Q  253 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcat 351  Q
    |||||||| ||||||||| |  |||||| |||||||||||||||||| ||||||  ||||||||||||| |||||| || | ||||||||||||||||||    
T  3178699 ttgcaacatatttataggagtttacatacgaaattgcaagcaaataaaaaaaaaactaaagaaattgcccaatttatagagatttatataagaaattcat 3178798  T
Q  352 agggatttacac 363  Q
    ||||||||||||    
T  3178799 agggatttacac 3178810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 36539627 - 36539738
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||||||||||||||  | ||||| |||||||||| |||||||| ||||||| ||||||||||||| |||||| ||||| |||||||||||||| |    
T  36539627 ttgcaacacatttataggggtttacataggaaattgcaaacaaataatcaaaaaatttaaagaaattgcccaatttataggggattatataagaaattta 36539726  T
Q  351 tagggatttaca 362  Q
    ||||||||||||    
T  36539727 tagggatttaca 36539738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 257 - 361
Target Start/End: Original strand, 54546904 - 54547009
Alignment:
Q  257 aacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcataggg 355  Q
    |||||||||||||||  | ||||||||||||| ||||||||||| |||||| ||||||||||| | |||||| |||||||||||||||||||||| |||     
T  54546904 aacacatttatagggatttacataagaaattgtaagcaaataatcaaaaatctaaagaaattgtccaatttataggggtttatataagaaattcaaagga 54547003  T
Q  356 atttac 361  Q
    ||||||    
T  54547004 atttac 54547009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 253 - 350
Target Start/End: Complemental strand, 10839513 - 10839414
Alignment:
Q  253 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    ||||||||||| |||||| |  |||||||||||||||||||||||||| ||||||| ||||||||||||| |||||| || |||||||||||||||||||    
T  10839513 ttgcaacacatgtataggtgtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttatagaggtttatataagaaattca 10839414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 254 - 362
Target Start/End: Original strand, 8926762 - 8926872
Alignment:
Q  254 tgcaacacatttatagggcgta-cataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcat 351  Q
    ||||||||||||||| ||  || |||||||||||||||||||||||| ||||||| || |||||||||| |||||| |||||||||||| |||||||||     
T  8926762 tgcaacacatttataagggttaacataagaaattgcaagcaaataatcaaaaaatctacagaaattgccaaatttataggggtttatatcagaaattcag 8926861  T
Q  352 agggatttaca 362  Q
    ||| |||||||    
T  8926862 aggaatttaca 8926872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 262 - 348
Target Start/End: Complemental strand, 22845484 - 22845398
Alignment:
Q  262 atttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaatt 348  Q
    ||||||||||  || |||| ||||||||||||||||||||||||| ||||||||||| | |||||| ||||||||||||||||||||    
T  22845484 atttatagggtttatataaaaaattgcaagcaaataataaaaaatctaaagaaattgtcaaatttataggggtttatataagaaatt 22845398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 276 - 362
Target Start/End: Complemental strand, 46685891 - 46685805
Alignment:
Q  276 cataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttaca 362  Q
    ||||||||||||||| ||||||||||||||| ||||||||||| | |||||| ||| |||||||||||||||| |  ||||||||||    
T  46685891 cataagaaattgcaaacaaataataaaaaatataaagaaattgtcaaatttataggagtttatataagaaatttagggggatttaca 46685805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 48206849 - 48206959
Alignment:
Q  253 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||||||||||| | |  |||||||||||||||||| ||||||| ||||||| |||| |||||| | |||||| ||||||||||||||| ||||||    
T  48206849 ttgcaacacatttataagtgtttacataagaaattgcaagtaaataatcaaaaaatctaaaaaaattgtcaaatttataggggtttatataag-aattca 48206947  T
Q  351 tagggatttaca 362  Q
     ||| |||||||    
T  48206948 gaggaatttaca 48206959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 263 - 354
Target Start/End: Original strand, 47889731 - 47889824
Alignment:
Q  263 tttatagggcgtacataagaaattg-caagcaaataataaaaaa-tgtaaagaaattgcctaatttacaggggtttatataagaaattcatagg 354  Q
    |||||||||  ||||| |||||||| |||| ||||||||||||| | ||||||||||||| |||||| |||  |||||||||||||||||||||    
T  47889731 tttatagggtttacattagaaattgtcaagtaaataataaaaaaatttaaagaaattgcccaatttataggaatttatataagaaattcatagg 47889824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 253 - 348
Target Start/End: Original strand, 33103739 - 33103835
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaatt 348  Q
    |||||||||||||||| ||  | |||||||||||| ||||||||||||||||||| |||| |||||  | |||||| ||||  ||||||||||||||    
T  33103739 ttgcaacacatttataaggatttacataagaaattacaagcaaataataaaaaatttaaataaattatccaatttatagggacttatataagaaatt 33103835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 253 - 350
Target Start/End: Complemental strand, 6280491 - 6280393
Alignment:
Q  253 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    ||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | |||||| || |||||||||||||||||||    
T  6280491 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 6280393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 51336231 - 51336303
Alignment:
Q  278 taagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||||||||| |||||||||||||| ||||||||||| | |||||| |  | ||||||||| |||||||    
T  51336231 taagaaattgcaagtaaataataaaaaatttaaagaaattgtcaaatttataaagatttatataaaaaattca 51336303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 20382642 - 20382693
Alignment:
Q  380 tttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 432  Q
    ||||| ||||||||||||| |||||||||||||||| |||| |||||||||||    
T  20382642 tttgggccggagcccgggcaagtgcccggggtcgcc-ggccatagaaccgccc 20382693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 36539762 - 36539808
Alignment:
Q  386 ccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 432  Q
    ||||||||||||||| |||||| | ||||| ||||||||||||||||    
T  36539762 ccggagcccgggcgactgcccgagctcgccaggccttagaaccgccc 36539808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 36826087 - 36826021
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaat-aataaaaaatgtaaagaaatt 317  Q
    |||||||||||||||||||  | |||||||||| ||||||||||| | |||||||| ||||||||||    
T  36826087 ttgcaacacatttataggggtttacataagaaactgcaagcaaatcattaaaaaatttaaagaaatt 36826021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 7e-60; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 256 - 429
Target Start/End: Original strand, 5974988 - 5975161
Alignment:
Q  256 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcataggg 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  5974988 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcttaggg 5975087  T
Q  356 atttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccg 429  Q
    ||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5975088 atttacacaagaaattgaaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccg 5975161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 208 - 432
Target Start/End: Complemental strand, 42517474 - 42517246
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 307  Q
    ||||||||||||||||||||||||||||||||  |          |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42517474 cagtggcggagccaggaatattgtaaagcccgtgcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 42517375  T
Q  308 taaagaaattgcctaatttacaggg----gtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtg 403  Q
    ||||||||||||| |||||| ||||    |||||||||||||||||||||||||||||||                ||||||||||||||||||||||||    
T  42517374 taaagaaattgcccaatttataggggtttgtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtg 42517275  T
Q  404 cccggggtcgccgggccttagaaccgccc 432  Q
    |||||||||||||||||||||||||||||    
T  42517274 cccggggtcgccgggccttagaaccgccc 42517246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 206 - 432
Target Start/End: Complemental strand, 7742957 - 7742731
Alignment:
Q  206 agcagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa 305  Q
    |||||||||||||||||||||||||||||| |||  |          |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7742957 agcagtggcggagccaggaatattgtaaagtccgagcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa 7742858  T
Q  306 tgtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcc 405  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||                 || || |||||||||||||||||||    
T  7742857 tgtaaagaaattgcccaatttataggggtttatataagaaattcataaggatttacacaagaaattgcaaaaaaatttgctcggagcccgggcgagtgcc 7742758  T
Q  406 cggggtcgccgggccttagaaccgccc 432  Q
    |||||||||||||||||||||||||||    
T  7742757 cggggtcgccgggccttagaaccgccc 7742731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 210 - 363
Target Start/End: Original strand, 3346740 - 3346893
Alignment:
Q  210 gtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgta 309  Q
    ||||||||||||||||||||||||||||||| |          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3346740 gtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgta 3346839  T
Q  310 aagaaattgcctaatttacaggggtttatataagaaattcatagggatttacac 363  Q
    ||||||||| | |||||| |||||||||||||||||||||||||||||||||||    
T  3346840 aagaaattgtccaatttataggggtttatataagaaattcatagggatttacac 3346893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 253 - 432
Target Start/End: Original strand, 49902465 - 49902644
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcata 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||    
T  49902465 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgccctatttataggggtttatataagaaattcata 49902564  T
Q  353 gggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 432  Q
    |||||||||||                |||||||||||||||| |||||||||||| |||||||| ||||||||||||||    
T  49902565 gggatttacacaagaaattgcaaaaaatttggcccggagcccgagcgagtgcccggagtcgccggaccttagaaccgccc 49902644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 207 - 432
Target Start/End: Complemental strand, 48392581 - 48392358
Alignment:
Q  207 gcagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaat 306  Q
    ||||||||||||||||||||||||||||| |||| |          ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48392581 gcagtggcggagccaggaatattgtaaagtccgggcaaaaaaat--ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaat 48392484  T
Q  307 gtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgccc 406  Q
    |||| ||||||||| |||||| |||| ||||||||||||||||||||||||||||||                 ||||| ||||||||||||||||||||    
T  48392483 gtaatgaaattgcccaatttatagggatttatataagaaattcatagggatttacacaagaaattgcaaaaaaattggctcggagcccgggcgagtgccc 48392384  T
Q  407 ggggtcgccgggccttagaaccgccc 432  Q
    | ||||||||||||||||||||||||    
T  48392383 gaggtcgccgggccttagaaccgccc 48392358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 208 - 432
Target Start/End: Original strand, 23908237 - 23908451
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 307  Q
    ||||||||||||||||||||||||||||||||| |          |||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  23908237 cagtggcggagccaggaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaaca 23908336  T
Q  308 taaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccg 407  Q
    ||||||||||| | |||||| |||| ||||||||||||||||||||| ||||||||                |||||||||||||||||||||||||| |    
T  23908337 taaagaaattgtccaatttatagggatttatataagaaattcataggaatttacac----------aaaaaatttggcccggagcccgggcgagtgcctg 23908426  T
Q  408 gggtcgccgggccttagaaccgccc 432  Q
    |||||||||||||||||||||||||    
T  23908427 gggtcgccgggccttagaaccgccc 23908451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 253 - 432
Target Start/End: Original strand, 47022699 - 47022878
Alignment:
Q  253 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcata 352  Q
    |||||||| ||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||    
T  47022699 ttgcaacatatttatagggcgtacataagaaattacaagtaaataataaaaaatataaagaaattgcctaatttataggagtttatataagaaattcata 47022798  T
Q  353 gggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 432  Q
    | |||||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47022799 gagatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 47022878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 208 - 432
Target Start/End: Complemental strand, 10156192 - 10155968
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 307  Q
    ||||||||||||||| |||||||||||||| || |          ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10156192 cagtggcggagccagaaatattgtaaagcctgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaata 10156093  T
Q  308 taaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccg 407  Q
    ||||||||||| | |||||| ||  |||||||||||||||||||||| ||||||||                 |||||||||||||||||||||||||||    
T  10156092 taaagaaattgtccaatttatagaagtttatataagaaattcataggaatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccg 10155993  T
Q  408 gggtcgccgggccttagaaccgccc 432  Q
    |||||||||||||||||||||||||    
T  10155992 gggtcgccgggccttagaaccgccc 10155968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 208 - 363
Target Start/End: Complemental strand, 29149724 - 29149569
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 307  Q
    |||||||||||||||||||||||||||| |||| |          ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  29149724 cagtggcggagccaggaatattgtaaagtccgggcaaaaaaaaatttgcaacacatgtatagggcgtacataagaaattgcaagcaaataataaaaaacg 29149625  T
Q  308 taaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacac 363  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  29149624 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttacac 29149569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 256 - 432
Target Start/End: Original strand, 38859849 - 38860027
Alignment:
Q  256 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcctaatttacaggggtttatataagaaattcatag 353  Q
    ||||||||||||||||  | ||||||||||||||||||||||||||||||| | |||| |||||||| |||||| |||||||||||||||||||||||||    
T  38859849 caacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaaaaaattgcccaatttataggggtttatataagaaattcatag 38859948  T
Q  354 ggatttacacnnnnnnnnnnnnnnnntttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 432  Q
    | |||||||                 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  38859949 gaatttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcccggggtcgccgggccatagaaccgccc 38860027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 253 - 362
Target Start/End: Complemental strand, 10907781 - 10907670
Alignment:
Q  253 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||||||||||||| |  |||||||||||||||||||||||||| ||||||| ||||||||||| || ||||| ||||||||||||||||||||||    
T  10907781 ttgcaacacatttataggtgtctacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgtctgatttataggggtttatataagaaattca 10907682  T
Q  351 tagggatttaca 362  Q
     ||| |||||||    
T  10907681 gaggaatttaca 10907670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 42456566 - 42456678
Alignment:
Q  253 ttgcaacacatttatagggcgt--acataagaaattgcaagcaaataataaaaaatgt-aaagaaattgcctaatttacaggggtttatataagaaattc 349  Q
    |||||||||||||||||||  |  ||||||||||||||||| | ||||||||   | | |||||||||||| |||||| |||||||||||||||||||||    
T  42456566 ttgcaacacatttataggggatttacataagaaattgcaagtagataataaatttttttaaagaaattgcccaatttataggggtttatataagaaattc 42456665  T
Q  350 atagggatttaca 362  Q
    ||||| |||||||    
T  42456666 ataggaatttaca 42456678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 281 - 349
Target Start/End: Original strand, 5558334 - 5558402
Alignment:
Q  281 gaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattc 349  Q
    ||||||||||||||||||| |||||| ||||||||||| | |||||| |||||||||||||||||||||    
T  5558334 gaaattgcaagcaaataatcaaaaatctaaagaaattgtccaatttataggggtttatataagaaattc 5558402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 26835333 - 26835444
Alignment:
Q  253 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||||||||||| |||  ||||| |||||||||||||||||||| ||||||| |||| ||||||   |||||| ||| ||||||||||||||||||    
T  26835333 ttgcaacacatttatatgggtttacatgagaaattgcaagcaaataatcaaaaaatctaaaaaaattgttcaatttataggagtttatataagaaattca 26835432  T
Q  351 tagggatttaca 362  Q
    || | |||||||    
T  26835433 tatgaatttaca 26835444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 30252856 - 30252787
Alignment:
Q  274 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataa 342  Q
    |||||||||||||||||||||||||| ||||||| ||||||| ||| |||||||| |||| |||||||||    
T  30252856 tacataagaaattgcaagcaaataatcaaaaaatctaaagaagttgtctaatttatagggatttatataa 30252787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 274 - 350
Target Start/End: Original strand, 30745361 - 30745438
Alignment:
Q  274 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| | |||||| |||| |||||| ||||||||||    
T  30745361 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattca 30745438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 274 - 350
Target Start/End: Original strand, 30766812 - 30766889
Alignment:
Q  274 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| | |||||| |||| |||||| ||||||||||    
T  30766812 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattca 30766889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 14796871 - 14796982
Alignment:
Q  253 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataata-aaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||| ||||||||| |||  |||||||||||||||||||||||| |  |||||| ||||| ||| |||||||||| | | || |||||||||||||||    
T  14796871 ttgcaatacatttatacgggtttacataagaaattgcaagcaaatattcgaaaaatctaaagtaatggcctaatttataagtgtgtatataagaaattca 14796970  T
Q  351 tagggatttaca 362  Q
     ||| |||||||    
T  14796971 gaggaatttaca 14796982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 14805745 - 14805856
Alignment:
Q  253 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataata-aaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||| ||||||||| |||  |||||||||||||||||||||||| |  |||||| ||||| ||| |||||||||| | | || |||||||||||||||    
T  14805745 ttgcaatacatttatacgggtttacataagaaattgcaagcaaatattcgaaaaatctaaagtaatggcctaatttataagtgtgtatataagaaattca 14805844  T
Q  351 tagggatttaca 362  Q
     ||| |||||||    
T  14805845 gaggaatttaca 14805856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 253 - 362
Target Start/End: Complemental strand, 44107521 - 44107410
Alignment:
Q  253 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||||||||||| ||  | ||||||||||||||||| ||||||| ||||||| | ||||||||   ||||||| |||||||||||||| ||| |||    
T  44107521 ttgcaacacatttataaggttttacataagaaattgcaagtaaataatcaaaaaatctgaagaaattaattaatttataggggtttatataaaaaaatca 44107422  T
Q  351 tagggatttaca 362  Q
     ||| |||||||    
T  44107421 gaggaatttaca 44107410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 380 - 432
Target Start/End: Complemental strand, 29149562 - 29149510
Alignment:
Q  380 tttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 432  Q
    ||||| |||||||||||||||||||| ||||||||| ||||||| ||||||||    
T  29149562 tttggtccggagcccgggcgagtgcctggggtcgccaggccttaaaaccgccc 29149510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 26511739 - 26511667
Alignment:
Q  278 taagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||||| ||| ||||||| |||||| ||||||||||    ||||||||||  |||||||||||||||||    
T  26511739 taagaaattgtaagtaaataatcaaaaatttaaagaaattattcaatttacaggaatttatataagaaattca 26511667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 275 - 317
Target Start/End: Complemental strand, 8430551 - 8430508
Alignment:
Q  275 acataagaaattgcaagcaaataataa-aaaatgtaaagaaatt 317  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||    
T  8430551 acataagaaattgcaagcaaataataaaaaaatttaaagaaatt 8430508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 3346910 - 3346962
Alignment:
Q  380 tttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 432  Q
    ||||||||| ||| |||||||||||||||| |||| || |||||||| |||||    
T  3346910 tttggcccgaagctcgggcgagtgcccgggatcgctggaccttagaatcgccc 3346962  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 274 - 362
Target Start/End: Original strand, 13131914 - 13132002
Alignment:
Q  274 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttaca 362  Q
    |||||||||||||||||| | ||||  |||||  ||||||||||| | |||||| || | ||||||||| ||||| | ||| |||||||    
T  13131914 tacataagaaattgcaaggagataagtaaaaagctaaagaaattgtccaatttatagtgatttatataaaaaatttagaggaatttaca 13132002  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 274 - 350
Target Start/End: Original strand, 45968685 - 45968761
Alignment:
Q  274 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattca 350  Q
    |||||||||||||||||| ||||||| |||||| || | |||||| | |||||| | | | |||||||| |||||||    
T  45968685 tacataagaaattgcaagtaaataatcaaaaatctataaaaattgtccaatttataagagattatataaaaaattca 45968761  T

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Target: scaffold0079 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 208 - 319
Target Start/End: Original strand, 54440 - 54551
Alignment:
Q  208 cagtggcggagccaggaatattgtaaagcccggacnnnnnnnnnnttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 307  Q
    ||||||||||||||| ||||||||||||||||| |          |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54440 cagtggcggagccagaaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatg 54539  T
Q  308 taaagaaattgc 319  Q
    ||||||||||||    
T  54540 taaagaaattgc 54551  T

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Target: scaffold0079; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 279 - 432
Target Start/End: Original strand, 54542 - 54695
Alignment:
Q  279 aagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttacacnnnnnnnnnnnnnnn 378  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||| |||| ||||||||| ||||||||||| ||||||||                   
T  54542 aagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatataaaaaattcataggaatttacacaaaaaattgcaaaaa 54641  T
Q  379 ntttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 432  Q
      ||||||||||  |||||||| |||||||||||||||||||||||||||||||    
T  54642 aattggcccggaatccgggcgaatgcccggggtcgccgggccttagaaccgccc 54695  T

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Target: scaffold0045 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 274 - 362
Target Start/End: Complemental strand, 34563 - 34474
Alignment:
Q  274 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttacaggggtttatataagaaattcatagggatttaca 362  Q
    |||||||||||||| ||||||||||| ||||||| |||||||| || | |||||| || | |||||||||  |||||| |||||||||||    
T  34563 tacataagaaattgtaagcaaataatcaaaaaatctaaagaaactgtccaatttatagagatttatataaagaattcagagggatttaca 34474  T

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