View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5371-Insertion-6 (Length: 463)
Name: NF5371-Insertion-6
Description: NF5371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5371-Insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 404
Target Start/End: Complemental strand, 18776196 - 18775811
Alignment:
| Q |
10 |
tgacattaaaataacagtgacatatttgaccagaatattccttnnnnnnnntatttgaccaaaatatcatatatcgaggataattattatgaaaaaattg |
109 |
Q |
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| T |
18776196 |
tgacattaaaataacagtgacatatttgaccagaatattccttaaaaaaaatatttgaccaaaatatcatatatcgaggataattattatgaaaaaattg |
18776097 |
T |
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| Q |
110 |
aggatagtaatattaatacataaaatagttaccattgcttcagaagtctggtattataaatacaccacttttgaccgtaa-ccaccatcaacaaaacaaa |
208 |
Q |
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| T |
18776096 |
aggatagtaatattaatacataaaatagctaccattgcttcagaagtctggtattataaatacaccacttttgaccgtaaaccaccatcaacaaaacaaa |
18775997 |
T |
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| Q |
209 |
ctttgcaaagaataattgttgtgaaatggcaaaccacatctcaaactgtgttaatctccttgtcatcctagctaccattgcttcaggtaaatgtctccag |
308 |
Q |
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| T |
18775996 |
ctttgcaaagaataattgttgtgaaatggcaaaccacatctcaaactgtattaatctccttgtcatcctagctacctttgcttcaggtaaatgtctccag |
18775897 |
T |
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| Q |
309 |
catttttatgttagtttaaannnnnnnnnnnnnnnnnnnnnatacaagaactaaaagcaaataaacgatatatttgaagaactaaacatatatttg |
404 |
Q |
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| T |
18775896 |
catttttatgttagttaaa----------ttttttatttttatacaagaactaaaagcaaataaacgatatatttgaagaactaaacatatatttg |
18775811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 315
Target Start/End: Complemental strand, 18790501 - 18790406
Alignment:
| Q |
220 |
ataattgttgtgaaatggcaaaccacatctcaaactgtgttaatctccttgtcatcctagctaccattgcttcaggtaaatgtctccagcattttt |
315 |
Q |
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| T |
18790501 |
ataattgttatcaaatggcaaaccacttctcaaacttgtttaatatccttgtcattctagctaccattgccgcaggtaagtgtctccagcattttt |
18790406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 222 - 315
Target Start/End: Complemental strand, 18781847 - 18781754
Alignment:
| Q |
222 |
aattgttgtgaaatggcaaaccacatctcaaactgtgttaatctccttgtcatcctagctaccattgcttcaggtaaatgtctccagcattttt |
315 |
Q |
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| T |
18781847 |
aattgttatcaaatggcaaaccacttctcaatctggtttaatttccttgtcatcctagctaccattgccgcgggtaagtgtctgcaacattttt |
18781754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 18816862 - 18816919
Alignment:
| Q |
232 |
aaatggcaaaccacatctcaaactgtgttaatctccttgtcatcctagctaccattgc |
289 |
Q |
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| T |
18816862 |
aaatggcaaaccacttctcaaactggtttaatctccttctcattctagctaccattgc |
18816919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 454
Target Start/End: Complemental strand, 18775794 - 18775754
Alignment:
| Q |
414 |
tccctgtgaacttaactcaattgataagatcaatgcgtctg |
454 |
Q |
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| T |
18775794 |
tccctgtgaacttaactcaattggtaagatcaatacgtctg |
18775754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 18762659 - 18762594
Alignment:
| Q |
233 |
aatggcaaaccacatctcaaactgtgttaatctccttgtcatcctagctaccattgcttcaggtaa |
298 |
Q |
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| T |
18762659 |
aatggcaaaccacatctcaaatttcttttatttctttgtcatcctagccaccattgctgcaggtaa |
18762594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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