View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5371_high_2 (Length: 252)
Name: NF5371_high_2
Description: NF5371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5371_high_2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 45729121 - 45729364
Alignment:
| Q |
9 |
gagaagaacacacacatggaagatggtaaaaaacaagttgcagagnnnnnnntgaagagattccttctcgtagtaaattgtctcatattatccctaggta |
108 |
Q |
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| T |
45729121 |
gagaagaacacacacatggaagatggtaaaaaacaagttgcagagaaaaaaatgaagagattccttctcgtagtaaattgtctcatattatccctaggta |
45729220 |
T |
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| Q |
109 |
cctgcagtgctcccctcataatgcgtctctatttcatccacggcggccaacgtgtctggctctccgccttcctccaaaccgccggtttccccttgatgct |
208 |
Q |
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| T |
45729221 |
cctgcagtgctcccctcataatgcgtctctatttcatccacggcggccaacgtgtctggctctccgccttcctccaaaccgccggtttccccttgatgct |
45729320 |
T |
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| Q |
209 |
cattcccctcgcaatctcatacatcaaacgccaccgtctccacc |
252 |
Q |
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| T |
45729321 |
cattcccctcgcaatctcatacatcaaacgccaccgtctccacc |
45729364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 68 - 238
Target Start/End: Original strand, 45724991 - 45725161
Alignment:
| Q |
68 |
attccttctcgtagtaaattgtctcatattatccctaggtacctgcagtgctcccctcataatgcgtctctatttcatccacggcggccaacgtgtctgg |
167 |
Q |
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||||||||| ||||||||||||| |||||| ||||||||| || | ||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45724991 |
attccttctgatagtaaattgtctgatattagccctaggtaactccggtggtcccctaataatgcgtctctatttcatccacggcggccaacgtgtctgg |
45725090 |
T |
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| Q |
168 |
ctctccgccttcctccaaaccgccggtttccccttgatgctcattcccctcgcaatctcatacatcaaacg |
238 |
Q |
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| T |
45725091 |
ctctccgcctgcctggaaactgccggtttccccttgatgctcattcccctcacaatctcatacatccaacg |
45725161 |
T |
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