View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5371_low_1 (Length: 416)
Name: NF5371_low_1
Description: NF5371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5371_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 45729755 - 45729381
Alignment:
| Q |
18 |
aaaataaatccatacaatgcagaagcagcaaccgtggttgaaaaactaatccaatattgttttgcagaaacaccagcaggacgatcactactcgtatgca |
117 |
Q |
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| T |
45729755 |
aaaataaatccatacaatgcagaagcagcaaccgtggttgaaaaactaatccaatattgttttgcagaaacaccagcaggacgatcactactcgtatgca |
45729656 |
T |
|
| Q |
118 |
tagccaaaacaccagctccaaccgtaagcaaaacaatggcgtttacagtaaaagctgtaaatttctctttcacaataagaaaagcgaaaaatgcagtgaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45729655 |
tagccaaaacaccagctccaaccgtaagcaaaacaacggcgtttacagtaaaagctgtaaatttctctttcacaataagaaaagcgaaaaacgcagtgaa |
45729556 |
T |
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| Q |
218 |
accaagctgagatgctattattaaggcagaagtggaaactggaagccgagcaacgccatatgcgaagagatagtcgtcaaggccggtgaggattccgatg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45729555 |
accaagctgagatgctattattaaggcagaagtggaaactggaagccgagcaacgccatatgcgaagagatagtcgtcaaggccggtgaggattccgatg |
45729456 |
T |
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| Q |
318 |
aaggcagctgcgaagaaaataggaggtttcatggagattatatttagtttttctggggcgatggagatggttgtc |
392 |
Q |
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| T |
45729455 |
aaggcagctgcgaagaaaataggaggtttcatggagattatatttagtttttctggggcgatggagatggttgtc |
45729381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 45725566 - 45725196
Alignment:
| Q |
18 |
aaaataaatccatacaatgcagaagcagcaaccgtggttgaaaaactaatccaatattgttttgcagaaacaccagcaggacgatcactactcgtatgca |
117 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45725566 |
aaaacaaatccatacaatgcagatgcagcaaccgtggttgaaaaaccaatcgcatattgttttgcagaaacaccagcaggacgatcactactcgtatgca |
45725467 |
T |
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| Q |
118 |
tagccaaaacaccagctccaaccgtaagcaaaacaatggcgtttacagtaaaagctgtaaatttctctttcacaataagaaaagcgaaaaatgcagtgaa |
217 |
Q |
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|||||||||||||||| ||||| |||||||||| || ||||||||| ||||| ||||||||||||| |||||||| ||||||||||||||| || ||||| |
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| T |
45725466 |
tagccaaaacaccagcaccaacagtaagcaaaaaaacggcgtttacggtaaatgctgtaaatttctgtttcacaagaagaaaagcgaaaaacgcggtgaa |
45725367 |
T |
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| Q |
218 |
accaagctgagatgctattattaaggcagaagtggaaactggaagccgagcaacgccatatgcgaagagatagtcgtcaaggccggtgaggattccgatg |
317 |
Q |
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|||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||| |
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| T |
45725366 |
accaagctgagatgctataattaaggaagaagtggaaaccggaagccgagcaacgccatatgcgtagagataatcgtcaagaccggtgaggattccgaca |
45725267 |
T |
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| Q |
318 |
aaggcagctgcgaagaaaataggaggtttcatggagattatatttagtttttctggggcgatggagatggt |
388 |
Q |
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||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
45725266 |
aaggcggctgcaaagaaaataggtggtttcatggagattatattttgtttttctgaggcgatggagatggt |
45725196 |
T |
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