View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5371_low_2 (Length: 403)

Name: NF5371_low_2
Description: NF5371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5371_low_2
NF5371_low_2
[»] chr7 (10 HSPs)
chr7 (138-384)||(31838569-31838815)
chr7 (28-102)||(31837755-31837829)
chr7 (32-79)||(10893351-10893398)
chr7 (32-81)||(10893871-10893920)
chr7 (33-67)||(8204405-8204439)
chr7 (33-67)||(8216882-8216916)
chr7 (33-67)||(31753778-31753812)
chr7 (33-75)||(37775991-37776033)
chr7 (35-81)||(44172892-44172938)
chr7 (35-67)||(3119407-3119439)
[»] chr5 (4 HSPs)
chr5 (35-82)||(28322252-28322299)
chr5 (179-252)||(11083371-11083444)
chr5 (35-80)||(39828477-39828522)
chr5 (35-75)||(35439302-35439342)
[»] chr4 (14 HSPs)
chr4 (35-81)||(20119956-20120002)
chr4 (36-75)||(683064-683103)
chr4 (36-75)||(51383996-51384035)
chr4 (37-75)||(9988707-9988745)
chr4 (35-81)||(18783988-18784034)
chr4 (35-81)||(31277026-31277072)
chr4 (35-81)||(46011624-46011670)
chr4 (35-76)||(2796557-2796598)
chr4 (37-66)||(3457950-3457979)
chr4 (35-72)||(8457936-8457973)
chr4 (35-67)||(2976705-2976737)
chr4 (35-75)||(19262932-19262972)
chr4 (35-67)||(32369928-32369960)
chr4 (35-67)||(35212743-35212775)
[»] chr6 (11 HSPs)
chr6 (35-80)||(6294539-6294584)
chr6 (33-81)||(10335378-10335426)
chr6 (35-82)||(6284662-6284709)
chr6 (35-81)||(6074524-6074570)
chr6 (37-75)||(32577472-32577510)
chr6 (33-66)||(7112787-7112820)
chr6 (33-66)||(8781325-8781358)
chr6 (35-76)||(34625745-34625786)
chr6 (38-74)||(4945274-4945310)
chr6 (35-67)||(8148131-8148163)
chr6 (35-75)||(10157995-10158035)
[»] chr1 (7 HSPs)
chr1 (35-75)||(26462653-26462693)
chr1 (35-75)||(29230076-29230116)
chr1 (32-79)||(24701104-24701151)
chr1 (35-66)||(48317608-48317639)
chr1 (35-81)||(3451866-3451912)
chr1 (35-75)||(43328478-43328518)
chr1 (35-75)||(43609826-43609866)
[»] chr8 (3 HSPs)
chr8 (33-75)||(32691752-32691794)
chr8 (35-75)||(16994051-16994091)
chr8 (33-81)||(31681832-31681880)
[»] chr3 (7 HSPs)
chr3 (35-81)||(18268007-18268053)
chr3 (33-75)||(19323456-19323498)
chr3 (35-77)||(19730215-19730257)
chr3 (35-77)||(19750805-19750847)
chr3 (35-81)||(21110465-21110511)
chr3 (35-81)||(47542546-47542592)
chr3 (35-81)||(49636828-49636874)
[»] chr2 (3 HSPs)
chr2 (42-76)||(22305566-22305600)
chr2 (38-76)||(34926830-34926868)
chr2 (35-64)||(19152259-19152288)
[»] scaffold0147 (1 HSPs)
scaffold0147 (37-66)||(37448-37477)


Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 138 - 384
Target Start/End: Original strand, 31838569 - 31838815
Alignment:
Q  138 tgtttgagcaggtggatgatatcactgcagattttgtgattagtcagcttttgtttttggatgctgatgatcctaccaaagatatcaagttgtttattaa 237  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31838569 tgtttgagcaggtggatgatatgactgcagattttgtgattagtcagcttttgtttttggatgctgatgatcctaccaaagatatcaagttgtttattaa 31838668  T
Q  238 ttcacctggtggttctgttactgctggtatgtaaacaatgttttactttacgttcttattcatttgttcttatttgcacttcacttgtcgtggatctact 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31838669 ttcacctggtggttctgttactgctggtatgtaaacaatgttttacttgacgttcttattcatttgttcttatttgcacttgacttgtcgtggatctact 31838768  T
Q  338 tcaatcttgagctcaattttgttgattgactgctcaagatatgttta 384  Q
    | |||||||||||||||||||||||||||||||||||||||||||||    
T  31838769 tgaatcttgagctcaattttgttgattgactgctcaagatatgttta 31838815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 31837755 - 31837829
Alignment:
Q  28 gacacagtaatttgagaaaatgaaataattgaatgtaatctcatgtgttggtgtaattgggtccttcactagtgg 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31837755 gacacagtaatttgagaaaatgaaataattgaatgtaatctcatgtgttggtgtaattgggtccttcactagtgg 31837829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 10893398 - 10893351
Alignment:
Q  32 cagtaatttgagaaaatgaaataattgaatgtaatctcatgtgttggt 79  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||    
T  10893398 cagtaatttgagaaaatgacataattgaatgtaatcgcatgtgttggt 10893351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 10893920 - 10893871
Alignment:
Q  32 cagtaatttgagaaaatgaaataattgaatgtaatctcatgtgttggtgt 81  Q
    ||||||||| ||||||||| |||||||||||||||| |||||||||||||    
T  10893920 cagtaatttaagaaaatgacataattgaatgtaatcacatgtgttggtgt 10893871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 8204439 - 8204405
Alignment:
Q  33 agtaatttgagaaaatgaaataattgaatgtaatc 67  Q
    |||||||||||||||||| ||||||||||||||||    
T  8204439 agtaatttgagaaaatgatataattgaatgtaatc 8204405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 8216916 - 8216882
Alignment:
Q  33 agtaatttgagaaaatgaaataattgaatgtaatc 67  Q
    |||||||||||||||||| ||||||||||||||||    
T  8216916 agtaatttgagaaaatgatataattgaatgtaatc 8216882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 31753812 - 31753778
Alignment:
Q  33 agtaatttgagaaaatgaaataattgaatgtaatc 67  Q
    |||||||||||||||| ||||||||||||||||||    
T  31753812 agtaatttgagaaaattaaataattgaatgtaatc 31753778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 37775991 - 37776033
Alignment:
Q  33 agtaatttgagaaaatgaaataattgaatgtaatctcatgtgt 75  Q
    |||||||||||||||||| |||||| ||||||||| |||||||    
T  37775991 agtaatttgagaaaatgacataattaaatgtaatcacatgtgt 37776033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 44172938 - 44172892
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgttggtgt 81  Q
    |||||||||||||||| |||||| ||||||||| |||||||| ||||    
T  44172938 taatttgagaaaatgacataattcaatgtaatcacatgtgtttgtgt 44172892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 3119407 - 3119439
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatc 67  Q
    |||||||||||||||| ||||||||||||||||    
T  3119407 taatttgagaaaatgacataattgaatgtaatc 3119439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 28322252 - 28322299
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgttggtgta 82  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  28322252 taatttgagaaaatgaattaattgaatgtaatcacatgtgttggtgta 28322299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 11083371 - 11083444
Alignment:
Q  179 agtcagcttttgtttttggatgctgatgatcctaccaaagatatcaagttgtttattaattcacctggtggttc 252  Q
    |||||| | ||| ||||||||||| | |||||||| |||||||||||  | ||||||||||| |||||||||||    
T  11083371 agtcagttgttgcttttggatgctcaagatcctactaaagatatcaaactttttattaattctcctggtggttc 11083444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 39828477 - 39828522
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgttggtg 80  Q
    ||||||||||| ||||||||||||||||||| | ||||||||||||    
T  39828477 taatttgagaatatgaaataattgaatgtaaccacatgtgttggtg 39828522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 35439342 - 35439302
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgt 75  Q
    |||||||| |||||||| |||||||||| ||||||||||||    
T  35439342 taatttgataaaatgaattaattgaatgaaatctcatgtgt 35439302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 20119956 - 20120002
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgttggtgt 81  Q
    ||||||||||||||||||||||| ||||||||| |||||||| ||||    
T  20119956 taatttgagaaaatgaaataatttaatgtaatcacatgtgttagtgt 20120002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 683064 - 683103
Alignment:
Q  36 aatttgagaaaatgaaataattgaatgtaatctcatgtgt 75  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  683064 aatttgagaaaatgacataattgaatgtaatcacatgtgt 683103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 51384035 - 51383996
Alignment:
Q  36 aatttgagaaaatgaaataattgaatgtaatctcatgtgt 75  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  51384035 aatttgtgaaaatgaaataattgaatgtaatcacatgtgt 51383996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 9988745 - 9988707
Alignment:
Q  37 atttgagaaaatgaaataattgaatgtaatctcatgtgt 75  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  9988745 atttgagaaaatgacataattgaatgtaatcacatgtgt 9988707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 18783988 - 18784034
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgttggtgt 81  Q
    ||||||||||||||||| ||||||||||||||  || ||||||||||    
T  18783988 taatttgagaaaatgaagtaattgaatgtaattacacgtgttggtgt 18784034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 31277072 - 31277026
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgttggtgt 81  Q
    ||||||||||||||||| ||||||||||||||| ||| | |||||||    
T  31277072 taatttgagaaaatgaactaattgaatgtaatcacatattttggtgt 31277026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 46011670 - 46011624
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgttggtgt 81  Q
    ||||||||||||||  ||| |||||||||||||||| ||||||||||    
T  46011670 taatttgagaaaatagaattattgaatgtaatctcacgtgttggtgt 46011624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 2796557 - 2796598
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgtt 76  Q
    ||||||||||||||||| ||||||||| ||||| ||||||||    
T  2796557 taatttgagaaaatgaattaattgaatttaatcacatgtgtt 2796598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 3457979 - 3457950
Alignment:
Q  37 atttgagaaaatgaaataattgaatgtaat 66  Q
    ||||||||||||||||||||||||||||||    
T  3457979 atttgagaaaatgaaataattgaatgtaat 3457950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 8457936 - 8457973
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatg 72  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  8457936 taatttgagaaaatgacataattgaatgtaatcacatg 8457973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 2976705 - 2976737
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatc 67  Q
    |||||||||||||||| ||||||||||||||||    
T  2976705 taatttgagaaaatgacataattgaatgtaatc 2976737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 19262972 - 19262932
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgt 75  Q
    ||||||||||| |||| |||||||||||||||| |||||||    
T  19262972 taatttgagaagatgacataattgaatgtaatcacatgtgt 19262932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 32369960 - 32369928
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatc 67  Q
    ||||||||||||||||| |||||||||||||||    
T  32369960 taatttgagaaaatgaattaattgaatgtaatc 32369928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 35212775 - 35212743
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatc 67  Q
    |||||||||||||| ||||||||||||||||||    
T  35212775 taatttgagaaaattaaataattgaatgtaatc 35212743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 6294584 - 6294539
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgttggtg 80  Q
    ||||||||||||||||| |||||||||| |||| ||||||||||||    
T  6294584 taatttgagaaaatgaattaattgaatgcaatcgcatgtgttggtg 6294539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 10335426 - 10335378
Alignment:
Q  33 agtaatttgagaaaatgaaataattgaatgtaatctcatgtgttggtgt 81  Q
    |||||||||||||||||| ||||||||||||||||  |||||| |||||    
T  10335426 agtaatttgagaaaatgacataattgaatgtaatcagatgtgtcggtgt 10335378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 6284709 - 6284662
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgttggtgta 82  Q
    |||||||||||||||| |||||||||| ||||| |||||||| |||||    
T  6284709 taatttgagaaaatgacataattgaatttaatcacatgtgttagtgta 6284662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 6074524 - 6074570
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgttggtgt 81  Q
    ||||||||||||||||| || ||||| |||||| |||||||||||||    
T  6074524 taatttgagaaaatgaattagttgaacgtaatcacatgtgttggtgt 6074570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 32577510 - 32577472
Alignment:
Q  37 atttgagaaaatgaaataattgaatgtaatctcatgtgt 75  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  32577510 atttgagaaaatgaattaattgaatgtaatcacatgtgt 32577472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 7112787 - 7112820
Alignment:
Q  33 agtaatttgagaaaatgaaataattgaatgtaat 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  7112787 agtaatttgagaaaatgaaataattaaatgtaat 7112820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 8781358 - 8781325
Alignment:
Q  33 agtaatttgagaaaatgaaataattgaatgtaat 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  8781358 agtaatttgagaaaatgaaataattaaatgtaat 8781325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 34625745 - 34625786
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgtt 76  Q
    ||||||||||||||||| ||||||||||||||| ||| ||||    
T  34625745 taatttgagaaaatgaattaattgaatgtaatcacatatgtt 34625786  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 4945274 - 4945310
Alignment:
Q  38 tttgagaaaatgaaataattgaatgtaatctcatgtg 74  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  4945274 tttgagaaaatgaattaattgaatgtaatcacatgtg 4945310  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 8148131 - 8148163
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatc 67  Q
    |||||||||||||||| ||||||||||||||||    
T  8148131 taatttgagaaaatgacataattgaatgtaatc 8148163  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 10157995 - 10158035
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgt 75  Q
    |||||||||||||||| |||||| ||||||||| |||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaatcacatgtgt 10158035  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 26462693 - 26462653
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgt 75  Q
    |||||| |||||||||||||||||||||||||| |||||||    
T  26462693 taatttaagaaaatgaaataattgaatgtaatcacatgtgt 26462653  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 29230076 - 29230116
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgt 75  Q
    |||||||||||||||| ||||||||||||||| ||||||||    
T  29230076 taatttgagaaaatgacataattgaatgtaatatcatgtgt 29230116  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 24701151 - 24701104
Alignment:
Q  32 cagtaatttgagaaaatgaaataattgaatgtaatctcatgtgttggt 79  Q
    ||||||||||| ||||||| |||||||||||||||| ||| |||||||    
T  24701151 cagtaatttgaaaaaatgacataattgaatgtaatcgcatctgttggt 24701104  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 66
Target Start/End: Original strand, 48317608 - 48317639
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaat 66  Q
    ||||||||||||||||||||||||||||||||    
T  48317608 taatttgagaaaatgaaataattgaatgtaat 48317639  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 3451866 - 3451912
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgttggtgt 81  Q
    ||||||||||||| ||| ||||||||| ||||| |||||||||||||    
T  3451866 taatttgagaaaacgaattaattgaatttaatcacatgtgttggtgt 3451912  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 43328478 - 43328518
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgt 75  Q
    ||||||||||||||||||||||| ||||||| | |||||||    
T  43328478 taatttgagaaaatgaaataatttaatgtaaccacatgtgt 43328518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 43609866 - 43609826
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgt 75  Q
    |||||||||||||| | |||||||||||||||| |||||||    
T  43609866 taatttgagaaaataacataattgaatgtaatcacatgtgt 43609826  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 32691752 - 32691794
Alignment:
Q  33 agtaatttgagaaaatgaaataattgaatgtaatctcatgtgt 75  Q
    |||||||| ||||||||| |||||||||||||||| |||||||    
T  32691752 agtaatttaagaaaatgacataattgaatgtaatcacatgtgt 32691794  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 16994051 - 16994091
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgt 75  Q
    |||||||||||||||| | |||||||||||||| |||||||    
T  16994051 taatttgagaaaatgacagaattgaatgtaatcacatgtgt 16994091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 31681880 - 31681832
Alignment:
Q  33 agtaatttgagaaaatgaaataattgaatgtaatctcatgtgttggtgt 81  Q
    |||||||| ||||||||| ||||||||||| |||| ||||||| |||||    
T  31681880 agtaatttaagaaaatgacataattgaatgaaatcacatgtgtcggtgt 31681832  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 18268053 - 18268007
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgttggtgt 81  Q
    ||||||||||||||||| |||||||| |||||| ||||||| |||||    
T  18268053 taatttgagaaaatgaattaattgaacgtaatcacatgtgtcggtgt 18268007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 19323498 - 19323456
Alignment:
Q  33 agtaatttgagaaaatgaaataattgaatgtaatctcatgtgt 75  Q
    |||||||||||||||||| |||||||||| ||||| |||||||    
T  19323498 agtaatttgagaaaatgacataattgaatttaatcacatgtgt 19323456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 19730257 - 19730215
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgttg 77  Q
    |||||||||||||||| |||||||||||| ||| |||||||||    
T  19730257 taatttgagaaaatgacataattgaatgtgatcacatgtgttg 19730215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 19750847 - 19750805
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgttg 77  Q
    |||||||||||||||| |||||||||||| ||| |||||||||    
T  19750847 taatttgagaaaatgacataattgaatgtgatcacatgtgttg 19750805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 21110511 - 21110465
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgttggtgt 81  Q
    |||||||||||||||| ||||||||||||||| | ||||||| ||||    
T  21110511 taatttgagaaaatgacataattgaatgtaatattatgtgttagtgt 21110465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 47542546 - 47542592
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgttggtgt 81  Q
    ||||||||||||||||| || |||||||||||| ||||||| |||||    
T  47542546 taatttgagaaaatgaactatttgaatgtaatcacatgtgtcggtgt 47542592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 49636874 - 49636828
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgtaatctcatgtgttggtgt 81  Q
    ||||||||||||||||| ||||||||||||||| |||| | ||||||    
T  49636874 taatttgagaaaatgaattaattgaatgtaatcacatgcgctggtgt 49636828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 22305566 - 22305600
Alignment:
Q  42 agaaaatgaaataattgaatgtaatctcatgtgtt 76  Q
    |||||||||||||||||||||||||| ||||||||    
T  22305566 agaaaatgaaataattgaatgtaatcacatgtgtt 22305600  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 34926830 - 34926868
Alignment:
Q  38 tttgagaaaatgaaataattgaatgtaatctcatgtgtt 76  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  34926830 tttgagaaaatgatagaattgaatgtaatctcatgtgtt 34926868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 19152259 - 19152288
Alignment:
Q  35 taatttgagaaaatgaaataattgaatgta 64  Q
    ||||||||||||||||||||||||||||||    
T  19152259 taatttgagaaaatgaaataattgaatgta 19152288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 37477 - 37448
Alignment:
Q  37 atttgagaaaatgaaataattgaatgtaat 66  Q
    ||||||||||||||||||||||||||||||    
T  37477 atttgagaaaatgaaataattgaatgtaat 37448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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