View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5372-Insertion-2 (Length: 265)
Name: NF5372-Insertion-2
Description: NF5372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5372-Insertion-2 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 12 - 265
Target Start/End: Original strand, 5607727 - 5607980
Alignment:
| Q |
12 |
aaacctggagttttcaacttgcttgttctgtatgatgtcctaaatcattctcaaccagctgctccatcacatgattatcctactcttcaaaattagattg |
111 |
Q |
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| T |
5607727 |
aaacctggagttttcaacttgcttgttctgtctgatgtcctaaatcattctcaaccagctgctccatcacatgattatcctactcttcaaaattagattg |
5607826 |
T |
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| Q |
112 |
atacaagctgcgtagcactgacacttcagattgaatgtgtctgatgtctaaaatgtgttggtgtccgacactgggcaccgtcacatgtgattaccttcat |
211 |
Q |
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| T |
5607827 |
atacaagctgcgtagcactgacacttcagattgaatgtgtctggtgtctaaaatgtgtcggtgtccgacaccgggcaccgtcgcatgtgattactttcat |
5607926 |
T |
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| Q |
212 |
tcnnnnnnnnnnnnaattcattactagtctcagagcgtagggttggtgtctgtg |
265 |
Q |
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| T |
5607927 |
tctttttattttttaattcattactagtgttggagcgtagggttggtgtctgtg |
5607980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 5588235 - 5588173
Alignment:
| Q |
22 |
ttttcaacttgcttgttctgtatgatgtcctaaatcattctcaaccagctgctccatcacatg |
84 |
Q |
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| T |
5588235 |
ttttcaatctgcttgttctgtatgatgtcctaaatcattctcaagctgctgctccatcacatg |
5588173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 5593196 - 5593134
Alignment:
| Q |
22 |
ttttcaacttgcttgttctgtatgatgtcctaaatcattctcaaccagctgctccatcacatg |
84 |
Q |
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| T |
5593196 |
ttttcaatctgcttgttctgtatgatgtcctaaatcattctcaagctgctgctccatcacatg |
5593134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 151
Target Start/End: Original strand, 3580560 - 3580588
Alignment:
| Q |
123 |
gtagcactgacacttcagattgaatgtgt |
151 |
Q |
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| T |
3580560 |
gtagcactgacacttcagattgaatgtgt |
3580588 |
T |
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