View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5372-Insertion-3 (Length: 210)
Name: NF5372-Insertion-3
Description: NF5372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5372-Insertion-3 |
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| [»] chr3 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 8175776 - 8175573
Alignment:
| Q |
8 |
ggccaccccgggcacccgcctgggctcaatcggtacttgctttatagttgacccaacccaatatcccattaaaccacctnnnnnnnnnnnnnnttggaca |
107 |
Q |
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| T |
8175776 |
ggccaccccgggcacccgcctgggctcaatcggtacttgctttatagttgacccaacccaatatcccattaaaccacctaaaaaaacaaaaaattggaca |
8175677 |
T |
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| Q |
108 |
a-ctcatattattcacacacgcgcagagcagaaaacagaaacaacgctctctgcctctctcatttcagtttcagcgctctcaagtctcatctgtctctac |
206 |
Q |
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| T |
8175676 |
aactcatattattcacacacgcgcaaagcagaaaacagaaacaacgctctctgcctctctcgtttcagtttcagcgctctcaagtctcatctgtctctac |
8175577 |
T |
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| Q |
207 |
gttt |
210 |
Q |
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|||| |
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| T |
8175576 |
gttt |
8175573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 9 - 210
Target Start/End: Complemental strand, 22258419 - 22258216
Alignment:
| Q |
9 |
gccaccccgggcacccgcctgggctcaatcggtacttgctttatagttgacccaacccaatatcccattaaaccacctnnnnnnnnnnnnnn-ttggaca |
107 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| |||| || |
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| T |
22258419 |
gccaccccgggcacccgcccgggctcaatcggtacttgctttatagttgatccaacccaatagcccattaagccacctaaaaaaaacaaaaaattgggca |
22258320 |
T |
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| Q |
108 |
a-ctcatattattcacacacgcgcagagcagaaaacagaaacaacgctctctgcctctctcatttcagtttcagcgctctcaagtctcatctgtctctac |
206 |
Q |
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| T |
22258319 |
aactcatattattcacacacgcgcaaagcagaaaacagaaacaacgctctctgcctctctcgtttcagtttcagcgctctcaagtctcatctgtctctac |
22258220 |
T |
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| Q |
207 |
gttt |
210 |
Q |
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|||| |
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| T |
22258219 |
gttt |
22258216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 30794460 - 30794265
Alignment:
| Q |
8 |
ggccaccccgggcacccgcctgggctcaatcggtacttgctttatagttgacccaacccaatatcccattaaaccacctnnnnnnnnnnnnnnttggaca |
107 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||| || | || |
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| T |
30794460 |
ggccaccccgggcacccgcccgggctcaatcggtaattgctttatagttgacccaacccaatagcccattaagccacctaaaaaaacaaaaaattaggca |
30794361 |
T |
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| Q |
108 |
a-ctcatattattcacacacgcgcagagcagaaaacagaaacaacgctctctgcctctctcatttcagtttcagcgctctcaagtctcatctgtctctac |
206 |
Q |
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| T |
30794360 |
aactcatattattcacacacgcgca--------aacagaaacaacactctctgcctctctcatttcagtttcagcgctctcaagtctcatctgtctctac |
30794269 |
T |
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