View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5373-Insertion-5 (Length: 825)
Name: NF5373-Insertion-5
Description: NF5373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5373-Insertion-5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 7 - 388
Target Start/End: Complemental strand, 45209369 - 45208991
Alignment:
| Q |
7 |
atatttttcagacaataatgtggccaaatcaagttcacatggtaaggatgctgattcggctaagaaactttgggatttcagcatgaatttgatcaaggac |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45209369 |
atatttttcagacaataatgtggccaaatcaagttcacatgggaaggatgctgatttggctaagaaactttgggatttcagcatgaatttgatcaaggac |
45209270 |
T |
|
| Q |
107 |
aaatagaataaccaagtattgttgtataagaatgaaaatgacattgtaatgtgtgtgcacgaaactaattgataaaaagaaaatggaaataacattcatt |
206 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45209269 |
aaatagaataaccaagt---gttgtataagaatgaaaatgacattgtaatgtgtgtgcacgaaactaattgataaaaagaaaatggaaataacattcatt |
45209173 |
T |
|
| Q |
207 |
gttcatgtcaatgtgaaatgcatctataacataattgattgtcacgtttgaaacaagattgtaattcaatatgaaatagggtcccttaatatggacctct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45209172 |
gttcatgtcaatgtgaaatgcatctataacataattgattgtcacgtttgaaacaagattgtaattcaatatgaaatagggtcccttaatatggacctct |
45209073 |
T |
|
| Q |
307 |
tgtaaaagggtccaaacatggtcctcctaaatcaaaccgaatattgccctttttgttctttggtttattactattattatta |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45209072 |
tgtaaaagggtccaaacatggtcctcctaaatcaaaccgaatattgccctttttgttctttggtttattattattattatta |
45208991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 587 - 801
Target Start/End: Complemental strand, 45208784 - 45208568
Alignment:
| Q |
587 |
gcaaaaggcaaaatggcttatattaaacacaaggtagagtacaaatataaagtaattaataaggcttctaccnnnnnnnnnnnnnnnnnga--caataag |
684 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| |
|
|
| T |
45208784 |
gcaaaaggcaaaatggcttatattaaacacaaggtagagtacaaatataaagtcattaataaggcttctaccaaaaaaaaaaaaaaaaaaaggcaataag |
45208685 |
T |
|
| Q |
685 |
gcaagcactttatgcggcaagaaccccactctgaggagtgaagacaagaggacaaccattccttcaatccaactccctctccctgactgagtgagtg--a |
782 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||| | |
|
|
| T |
45208684 |
gcaagcactttatgcagcaagaaccccactctgaggagtgaagacaagaggacaaccattccttcaatc--aatccaactccctgactgagtgagtgtaa |
45208587 |
T |
|
| Q |
783 |
ttgtagaaacaaaacaact |
801 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
45208586 |
ttgtagaaacaacacaact |
45208568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 45245531 - 45245395
Alignment:
| Q |
8 |
tatttttcagacaataatgtggccaaatcaagttcacatggtaaggatgctgattcggctaagaaactttgggatttcagcatgaatttgatcaaggaca |
107 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||| || | ||| ||||||| |||||||||||||||||||||||||||||||||||| | | | |
|
|
| T |
45245531 |
tatttttcagacaataatgtggccaaaagagaatcacagggaagggacgctgatttggctaagaaactttgggatttcagcatgaatttgattacgaagg |
45245432 |
T |
|
| Q |
108 |
aatagaataaccaagtattgttgtataagaatgaaaatga |
147 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
45245431 |
aatagaataaccaag---tgttgtataagaatggaaatga |
45245395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 45228173 - 45228059
Alignment:
| Q |
7 |
atatttttcagacaataatgtggccaaatcaagttcacatggtaaggatgctgattcggctaagaaactttgggatttcagcatgaatttgatcaaggac |
106 |
Q |
| |
|
|||||||||||| | ||||||||| |||| ||| ||||| || | ||| ||||||| |||||| || || ||||||||||||||||||||||| |||||| |
|
|
| T |
45228173 |
atatttttcagagagtaatgtggcaaaattaagatcacagggaagggacgctgatttggctaacaatctatgggatttcagcatgaatttgattaaggac |
45228074 |
T |
|
| Q |
107 |
aaatagaataaccaa |
121 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
45228073 |
aaatagaataaccaa |
45228059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 45202996 - 45202880
Alignment:
| Q |
7 |
atatttttcagacaataatgtggccaaatcaagttcacatggtaaggatgctgattcggctaagaaactttgggatttcagcatgaatttgatcaaggac |
106 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||| ||||||| | ||| ||||||| ||| |||||||| |||||||||||||| |||||| | ||| | |
|
|
| T |
45202996 |
atatttttcagacagtaatgtgtacaaaacaaccccacatgggagggacgctgatttggcaaagaaactctgggatttcagcatcaatttggttaagcag |
45202897 |
T |
|
| Q |
107 |
aaatagaataaccaagt |
123 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
45202896 |
aaatagaataaccaagt |
45202880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 794 - 825
Target Start/End: Complemental strand, 45208562 - 45208531
Alignment:
| Q |
794 |
aaacaacttagtaccacacattaaattccacc |
825 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
45208562 |
aaacaacttagtaccacacattaaattccacc |
45208531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 344
Target Start/End: Complemental strand, 45243055 - 45242996
Alignment:
| Q |
285 |
gggtcccttaatatggacctcttgtaaaagggtccaaacatggtcctcctaaatcaaacc |
344 |
Q |
| |
|
||||||| |||||| ||||||||| ||||||||||||| || | ||||||||||| |||| |
|
|
| T |
45243055 |
gggtcccctaatatcgacctcttgcaaaagggtccaaatattgacctcctaaatctaacc |
45242996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 96
Target Start/End: Complemental strand, 19274407 - 19274368
Alignment:
| Q |
57 |
ctgattcggctaagaaactttgggatttcagcatgaattt |
96 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
19274407 |
ctgatttggcaaagaaactttgggatttcagcatgaattt |
19274368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 45894555 - 45894592
Alignment:
| Q |
289 |
cccttaatatggacctcttgtaaaagggtccaaacatg |
326 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
45894555 |
cccttaatatggacctctttttaaagggtccaaacatg |
45894592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University