View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5373-Insertion-6 (Length: 793)
Name: NF5373-Insertion-6
Description: NF5373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5373-Insertion-6 |
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| [»] scaffold0291 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0195 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 535; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 8 - 654
Target Start/End: Original strand, 34879196 - 34879838
Alignment:
| Q |
8 |
accctttcgttatgatgtaacatcatcagctccaaatcgaaaagaaattagttgattgaaccattgatacagcagctgttgaaatttgatttatttgaag |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34879196 |
accctttcgttatgatgtaacatcatcagctccaaatcgaaaagaaattagttgattgaaccattgatatagcagctgttgaaatttgatttatttgaag |
34879295 |
T |
|
| Q |
108 |
caaccaacggcctctatttcactaacattcttccataaatattaattaattaaataaaatttgtggcacttgcttgcttttgttttgtgtgcaccttttg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34879296 |
caaccaacggcctctatttcactaacattcttccataaatattaattaattaaataaaatttgtggcacttgcttgcttttgttttatgtgcaccttttg |
34879395 |
T |
|
| Q |
208 |
aaagacataaataaatagtttcgaatttcctaagccgagaaaattgaagtgagtgtgagtgatcaagtgggagacagaaaggacaaacaaatgcctaacg |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34879396 |
aaagacataaataaatagtttcgaatttcctaagccgagaaaattgaagtgagtgtgagtaatcaagtgggagacagaaaggacaaacaaatgcctaacg |
34879495 |
T |
|
| Q |
308 |
atgcattgcaatcatagttcagattcattcaccatcaaacaaattatagggtccccctttccctactagcaaactgaaaaacatgcaacaatgcaaggaa |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34879496 |
atgcattgcaatcatagttcagattcattcaccatcaaacaaattatagggtccccctttccctactagcaaactgaaaaacatgcaacaatgaaaggaa |
34879595 |
T |
|
| Q |
408 |
aatccaaatgaatgttgtttcttactatcatcttcaacagttgagaaaggtcccccttcccctactagtataatttgcatgctaaatgtcatgtatccca |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
34879596 |
aatccaaatgaatgttgtttcttactatcatcttcaacagttgagaaaggtcccccttcccctaatagtataatttgcatgctaaaagtcatgtatccca |
34879695 |
T |
|
| Q |
508 |
ttattttgcaacactggatgttattgaaaactaaccnnnnnnnngacttgtgannnnnnnnnnnatatctttaatttttaaaagaagcatcatagtaatt |
607 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| |||| |||||||| |
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| T |
34879696 |
ttattttgcaacactggatgttattgaaaattaaccaaaaaaaagacttgtgatttttttta----atctttaatttttaaaagaaacatcgtagtaatt |
34879791 |
T |
|
| Q |
608 |
tgaaattcgattaagacgtgggtaaaatttgatcaaaatcagtgttg |
654 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
34879792 |
tgaaattcgattaagacacgggtaaaatttgatcaaaatcagtgttg |
34879838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 716 - 793
Target Start/End: Original strand, 34879900 - 34879977
Alignment:
| Q |
716 |
gctaggcaaggagtaaggacagacattagaagaaaacaccgacatcccaactaaattagcactccgagaaacctccgt |
793 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||| |||| |||||||||| |
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| T |
34879900 |
gctaggcagggagtaaggacagacattagaagaaaacaccgacatcctaactaggttggcaccccgaaaaacctccgt |
34879977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 716 - 769
Target Start/End: Complemental strand, 28016090 - 28016037
Alignment:
| Q |
716 |
gctaggcaaggagtaaggacagacattagaagaaaacaccgacatcccaactaa |
769 |
Q |
| |
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|||| ||| ||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
28016090 |
gctaagcagggagtaaggacagacatcagaaggaaacaccgacatcccaactaa |
28016037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 585 - 654
Target Start/End: Original strand, 34882396 - 34882465
Alignment:
| Q |
585 |
ttaaaagaagcatcatagtaatttgaaattcgattaagacgtgggtaaaatttgatcaaaatcagtgttg |
654 |
Q |
| |
|
||||| ||||||||||| |||| ||||||||| |||||| ||| |||||||||| |||||||||||||| |
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| T |
34882396 |
ttaaaggaagcatcataataatctgaaattcggttaagaagtgaataaaatttgaacaaaatcagtgttg |
34882465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 721 - 793
Target Start/End: Original strand, 12629238 - 12629310
Alignment:
| Q |
721 |
gcaaggagtaaggacagacattagaagaaaacaccgacatcccaactaaattagcactccgagaaacctccgt |
793 |
Q |
| |
|
|||||||||||||||| |||| | ||||||||||||||||||||||| ||| ||| ||| ||||||||||| |
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| T |
12629238 |
gcaaggagtaaggacaaacatcgggagaaaacaccgacatcccaactagattggcatcccgggaaacctccgt |
12629310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 716 - 768
Target Start/End: Original strand, 41574283 - 41574335
Alignment:
| Q |
716 |
gctaggcaaggagtaaggacagacattagaagaaaacaccgacatcccaacta |
768 |
Q |
| |
|
||||||||||||| |||||||||||| | ||| ||||||| |||||||||||| |
|
|
| T |
41574283 |
gctaggcaaggagaaaggacagacatcaaaaggaaacaccaacatcccaacta |
41574335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 716 - 765
Target Start/End: Complemental strand, 32943844 - 32943795
Alignment:
| Q |
716 |
gctaggcaaggagtaaggacagacattagaagaaaacaccgacatcccaa |
765 |
Q |
| |
|
|||| |||||||||||||||||||||| | || |||||||||||| |||| |
|
|
| T |
32943844 |
gctaagcaaggagtaaggacagacattgggaggaaacaccgacataccaa |
32943795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 716 - 766
Target Start/End: Original strand, 15534 - 15584
Alignment:
| Q |
716 |
gctaggcaaggagtaaggacagacattagaagaaaacaccgacatcccaac |
766 |
Q |
| |
|
|||| ||||||||||||||||||||| || ||||||||||||||| ||||| |
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|
| T |
15534 |
gctaagcaaggagtaaggacagacatcaggagaaaacaccgacattccaac |
15584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 716 - 793
Target Start/End: Original strand, 31633566 - 31633643
Alignment:
| Q |
716 |
gctaggcaaggagtaaggacagacattagaagaaaacaccgacatcccaactaaattagcactccgagaaacctccgt |
793 |
Q |
| |
|
|||| ||||||||||||||||||||| | || |||||||||||||||||||| ||| ||| | | ||||||||||| |
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|
| T |
31633566 |
gctaagcaaggagtaaggacagacatcgggaggaaacaccgacatcccaactagattggcatcctgggaaacctccgt |
31633643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 721 - 768
Target Start/End: Original strand, 33325832 - 33325879
Alignment:
| Q |
721 |
gcaaggagtaaggacagacattagaagaaaacaccgacatcccaacta |
768 |
Q |
| |
|
|||||||||||||||||||||| | || |||||||||||| ||||||| |
|
|
| T |
33325832 |
gcaaggagtaaggacagacattgggaggaaacaccgacataccaacta |
33325879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0195 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0195
Description:
Target: scaffold0195; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 716 - 793
Target Start/End: Original strand, 8971 - 9047
Alignment:
| Q |
716 |
gctaggcaaggagtaaggacagacattagaagaaaacaccgacatcccaactaaattagcactccgagaaacctccgt |
793 |
Q |
| |
|
|||| ||||||||||||||||||||| | || |||||||||||| ||||||| || ||| |||| ||||||||||| |
|
|
| T |
8971 |
gctaagcaaggagtaaggacagacatcgggaggaaacaccgacataccaactaggttggca-tccgggaaacctccgt |
9047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0195; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 716 - 793
Target Start/End: Original strand, 14360 - 14436
Alignment:
| Q |
716 |
gctaggcaaggagtaaggacagacattagaagaaaacaccgacatcccaactaaattagcactccgagaaacctccgt |
793 |
Q |
| |
|
|||| ||||||||||||||||||||| | || |||||||||||| ||||||| || ||| |||| ||||||||||| |
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|
| T |
14360 |
gctaagcaaggagtaaggacagacatcgggaggaaacaccgacataccaactaggttggca-tccgggaaacctccgt |
14436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 719 - 768
Target Start/End: Original strand, 1537945 - 1537994
Alignment:
| Q |
719 |
aggcaaggagtaaggacagacattagaagaaaacaccgacatcccaacta |
768 |
Q |
| |
|
|||||||||||| |||||||||| | || |||||||||||||||||||| |
|
|
| T |
1537945 |
aggcaaggagtagggacagacatcaagaggaaacaccgacatcccaacta |
1537994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 716 - 769
Target Start/End: Original strand, 11415959 - 11416012
Alignment:
| Q |
716 |
gctaggcaaggagtaaggacagacattagaagaaaacaccgacatcccaactaa |
769 |
Q |
| |
|
||||||||||||| |||||| |||| | ||| ||||||||||||||||||||| |
|
|
| T |
11415959 |
gctaggcaaggagagaggacaaacatcaaaaggaaacaccgacatcccaactaa |
11416012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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