View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5373-Insertion-7 (Length: 613)

Name: NF5373-Insertion-7
Description: NF5373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5373-Insertion-7
NF5373-Insertion-7
[»] chr8 (6 HSPs)
chr8 (11-418)||(12930629-12931034)
chr8 (11-418)||(12935375-12935780)
chr8 (409-613)||(12934589-12934793)
chr8 (140-210)||(26504985-26505055)
chr8 (96-208)||(15588948-15589060)
chr8 (13-58)||(26504850-26504895)
[»] chr4 (11 HSPs)
chr4 (11-416)||(14178646-14179050)
chr4 (11-415)||(28611574-28611977)
chr4 (11-416)||(14173892-14174296)
chr4 (11-415)||(28606812-28607215)
chr4 (11-415)||(44161543-44161943)
chr4 (11-418)||(11104425-11104823)
chr4 (409-613)||(14177859-14178063)
chr4 (409-609)||(28607810-28608010)
chr4 (13-309)||(48826710-48827000)
chr4 (32-202)||(48708086-48708256)
chr4 (117-210)||(24726288-24726381)
[»] chr1 (1 HSPs)
chr1 (11-418)||(34907092-34907497)
[»] chr7 (9 HSPs)
chr7 (11-418)||(37040432-37040838)
chr7 (409-613)||(15300375-15300579)
chr7 (11-413)||(15290195-15290588)
chr7 (11-418)||(12098958-12099355)
chr7 (153-384)||(12082002-12082227)
chr7 (355-415)||(15302900-15302960)
chr7 (11-87)||(12084669-12084745)
chr7 (98-210)||(2757307-2757418)
chr7 (28-65)||(2757236-2757273)
[»] chr5 (4 HSPs)
chr5 (13-415)||(29106886-29107282)
chr5 (11-415)||(42910999-42911399)
chr5 (97-187)||(38997230-38997320)
chr5 (15-85)||(38994709-38994779)
[»] chr2 (1 HSPs)
chr2 (11-415)||(8539139-8539542)
[»] chr3 (3 HSPs)
chr3 (226-414)||(51302118-51302306)
chr3 (13-87)||(51302937-51303011)
chr3 (96-132)||(51302308-51302344)
[»] chr6 (2 HSPs)
chr6 (11-187)||(2100205-2100379)
chr6 (180-210)||(2100723-2100753)


Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 418
Target Start/End: Complemental strand, 12931034 - 12930629
Alignment:
Q  11 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn--tgaacaccaatat 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          |||||||||||||    
T  12931034 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaatgaacaccaatat 12930935  T
Q  109 ttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactct 208  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12930934 ttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactct 12930835  T
Q  209 ctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgat 308  Q
    ||              |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  12930834 ctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacctagaagttatagagatgat 12930739  T
Q  309 acccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcactt 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  12930738 acccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtattttcactt 12930639  T
Q  409 ctgcttcaat 418  Q
    ||||||||||    
T  12930638 ctgcttcaat 12930629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 11 - 418
Target Start/End: Complemental strand, 12935780 - 12935375
Alignment:
Q  11 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn--tgaacaccaatat 108  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||          |||||||||||||    
T  12935780 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaattcaaaagaaactggatcttgcagcgcagcggtagcgataaaaaaatgaacaccaatat 12935681  T
Q  109 ttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactct 208  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12935680 ttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactct 12935581  T
Q  209 ctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgat 308  Q
    ||              |||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||    
T  12935580 ctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttttactctaatgctattattttatagcacctagaagttatagagatgat 12935485  T
Q  309 acccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcactt 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  12935484 acccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtattttcactt 12935385  T
Q  409 ctgcttcaat 418  Q
    ||||||||||    
T  12935384 ctgcttcaat 12935375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 409 - 613
Target Start/End: Complemental strand, 12934793 - 12934589
Alignment:
Q  409 ctgcttcaatcccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattttgcctcagttgttgataaggct 508  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12934793 ctgcttcattcccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattctgcctcagttgttgataaggct 12934694  T
Q  509 acacatttttgcaatttagattgccaagatacagctccccttgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatat 608  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12934693 acacatttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatat 12934594  T
Q  609 ccgca 613  Q
    |||||    
T  12934593 ccgca 12934589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 26504985 - 26505055
Alignment:
Q  140 aaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct 210  Q
    |||||||| | ||||||||| |||||||||| |||||| |||| |||||||||||||||| || |||||||    
T  26504985 aaaaccacagtacaaactccaaaaaatattcaactataataaaaaatattacaatattctttcaactctct 26505055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 15589060 - 15588948
Alignment:
Q  96 tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaata 195  Q
    |||||| |||||||||   || ||||||||||| || |||| |||||| || | |||||||||  ||||||||| |||| ||| ||| |||||||||| |    
T  15589060 tgaacatcaatatttattttgaaaaaccctctattaatgagagaaaaatcaagtgacaaactctaaaaaatatttcactttatcaaacaatattacaaca 15588961  T
Q  196 ttctctccactct 208  Q
    || ||||||||||    
T  15588960 ttttctccactct 15588948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 26504850 - 26504895
Alignment:
Q  13 tcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 58  Q
    |||||||| |||| | ||||||||||||||||| ||||||||||||    
T  26504850 tcgacgagtttaatggaagtgtaaattaaaatttcaaaatccaaaa 26504895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 416
Target Start/End: Complemental strand, 14179050 - 14178646
Alignment:
Q  11 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaacaccaata 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           ||||||||||||    
T  14179050 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcaataaaaaaaatgaacaccaata 14178951  T
Q  108 tttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactc 207  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14178950 tttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactc 14178851  T
Q  208 tctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatga 307  Q
    |||              |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14178850 tctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagagatga 14178755  T
Q  308 tacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcact 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  14178754 tacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtattttcact 14178655  T
Q  408 tctgcttca 416  Q
    |||||||||    
T  14178654 tctgcttca 14178646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 415
Target Start/End: Original strand, 28611574 - 28611977
Alignment:
Q  11 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaacaccaata 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           ||||||||||||    
T  28611574 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaaatgaacaccaata 28611673  T
Q  108 tttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactc 207  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28611674 tttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactc 28611773  T
Q  208 tctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatga 307  Q
    |||              |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28611774 tctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagagatga 28611869  T
Q  308 tacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcact 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  28611870 tacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtattttcact 28611969  T
Q  408 tctgcttc 415  Q
    ||||||||    
T  28611970 tctgcttc 28611977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 416
Target Start/End: Complemental strand, 14174296 - 14173892
Alignment:
Q  11 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaacaccaata 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||            ||||||||||||    
T  14174296 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagtgataaaaaaaatgaacaccaata 14174197  T
Q  108 tttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactc 207  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14174196 tttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactc 14174097  T
Q  208 tctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatga 307  Q
    |||              |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14174096 tctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagagatga 14174001  T
Q  308 tacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcact 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||    
T  14174000 tacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcacacacttctacacacacagaaactttgtattttcact 14173901  T
Q  408 tctgcttca 416  Q
    |||||||||    
T  14173900 tctgcttca 14173892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 11 - 415
Target Start/End: Original strand, 28606812 - 28607215
Alignment:
Q  11 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaacaccaata 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           | ||||||||||    
T  28606812 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaaattaacaccaata 28606911  T
Q  108 tttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactc 207  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28606912 tttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactc 28607011  T
Q  208 tctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatga 307  Q
    |||              |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28607012 tctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagagatga 28607107  T
Q  308 tacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcact 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  28607108 tacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtattttcact 28607207  T
Q  408 tctgcttc 415  Q
    ||||||||    
T  28607208 tctgcttc 28607215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 415
Target Start/End: Complemental strand, 44161943 - 44161543
Alignment:
Q  11 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaacaccaata 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||    
T  44161943 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgataaaaaaaatgaacaccaata 44161844  T
Q  108 tttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactc 207  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  44161843 tttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaat--tctctccactc 44161746  T
Q  208 tctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatga 307  Q
    |||              ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44161745 tcttacacacaca----agagatacaatatagtgtttcccgtaagacctacttctattctaatgctattattttatagcacctagaagttatagagatga 44161650  T
Q  308 tacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgt-attctcac 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||  |||||||||||||||||  || ||||    
T  44161649 tacccacccggtgtatttttcccacactctctggatttactcaacactctattattcctctcacacacctct--acacacagaagctttgtgtttttcac 44161552  T
Q  407 ttctgcttc 415  Q
    |||||||||    
T  44161551 ttctgcttc 44161543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 418
Target Start/End: Complemental strand, 11104823 - 11104425
Alignment:
Q  11 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacaccaatattt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||        |||||||||||||||    
T  11104823 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagctgtagcgataaaaatgaacaccaatattt 11104724  T
Q  111 aacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct 210  Q
    ||| | ||||| |||||||||  ||||| ||| |||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||    
T  11104723 aacatagaaaatcctctaatatcgagggtaaa-ccacgggacaaactccgaaaaatattccaccatatctaagaatattacaatattctctccactctct 11104625  T
Q  211 nnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatac 310  Q
                  ||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||| ||||||||||||||||||||||||     
T  11104624 tacacacaa-----agagatacaatatagtgtttcccgtgagacccactcctattcaaatgctattattttataacacctagaagttatagagatgatat 11104530  T
Q  311 ccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttct 410  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||  |||| |||||||||||||| | ||||||    
T  11104529 ccacccggtgtatttttcctacactctctggatttactcaacactctattttttctctcacacacttcta--cacatagaagctttgtatt-tgacttct 11104433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 409 - 613
Target Start/End: Complemental strand, 14178063 - 14177859
Alignment:
Q  409 ctgcttcaatcccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattttgcctcagttgttgataaggct 508  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  14178063 ctgcttcattcccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattctgcctcggttgttgataaggct 14177964  T
Q  509 acacatttttgcaatttagattgccaagatacagctccccttgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatat 608  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14177963 acacatttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatat 14177864  T
Q  609 ccgca 613  Q
    |||||    
T  14177863 ccgca 14177859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 409 - 609
Target Start/End: Original strand, 28607810 - 28608010
Alignment:
Q  409 ctgcttcaatcccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattttgcctcagttgttgataaggct 508  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  28607810 ctgcttcattcccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattctgcctcggttgttgataaggct 28607909  T
Q  509 acacatttttgcaatttagattgccaagatacagctccccttgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatat 608  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28607910 acacatttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatat 28608009  T
Q  609 c 609  Q
    |    
T  28608010 c 28608010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 13 - 309
Target Start/End: Original strand, 48826710 - 48827000
Alignment:
Q  13 tcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnnt-gaacaccaatattta 111  Q
    |||||||||||||||||| |||||||||||||| |||||| |||  |||||||||||||||||||||||||||||          |||||||||||||||    
T  48826710 tcgacgagcttaacgcaattgtaaattaaaatttcaaaattcaa--gagattggatcttgcagcgcagcggtagcgatagaaaaagaacaccaatattta 48826807  T
Q  112 acgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctn 211  Q
    |||||||||| |||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||     
T  48826808 acgtggaaaatcctctaataccgagggaaaaatcacgggacaa-ctccgaaaaatattccactatattaaagaatattacaatattctcttcgctctct- 48826905  T
Q  212 nnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgata 309  Q
                 |||||||||||||||||||||||||||||   ||| |||||  ||||||||||| ||||||||||||||||||||||||||||||    
T  48826906 ---tacacacacaagagatacaatatagtgtttcccgtgagattcactcctatttgaatgctattattttatagcacctagaagttatagagatgata 48827000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 32 - 202
Target Start/End: Original strand, 48708086 - 48708256
Alignment:
Q  32 tgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacaccaatatttaacgtggaaaaccctctaata 131  Q
    |||||||||||||||||||||  |||||| |||| ||||| || ||||| ||| ||        | || ||||||||||||| || ||||| || |||||    
T  48708086 tgtaaattaaaattccaaaatataaaagaaattgaatcttacaacgcagtggtggcgataaaattaaataccaatatttaacatgaaaaactctataata 48708185  T
Q  132 ctgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 202  Q
    || || ||||||||||| |||||||||| ||||||||| || ||||||||| |||||||||||||||||||    
T  48708186 ctaagagaaaaaccacgtgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctctc 48708256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 117 - 210
Target Start/End: Original strand, 24726288 - 24726381
Alignment:
Q  117 gaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct 210  Q
    ||||||| |||||||   |||||||| ||||| ||||||||| ||||||||||||| |||||||||||| || | ||||||||||||| |||||    
T  24726288 gaaaaccatctaatatcaagggaaaagccacgagacaaactctgaaaaatattccattatattaaagaacataataatattctctccattctct 24726381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 418
Target Start/End: Complemental strand, 34907497 - 34907092
Alignment:
Q  11 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn--tgaacaccaatat 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          |||||||||||||    
T  34907497 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaatgaacaccaatat 34907398  T
Q  109 ttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactct 208  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34907397 ttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactct 34907298  T
Q  209 ctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgat 308  Q
    ||              |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  34907297 ctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacctagaagttatagagatgat 34907202  T
Q  309 acccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcactt 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  34907201 acccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtattttcactt 34907102  T
Q  409 ctgcttcaat 418  Q
    ||||||||||    
T  34907101 ctgcttcaat 34907092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 290; Significance: 1e-162; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 11 - 418
Target Start/End: Original strand, 37040432 - 37040838
Alignment:
Q  11 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaacaccaata 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||           ||||||||||||    
T  37040432 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaaagactggatcttgcagcgcagcggtagcgataaaaaaaatgaacaccaata 37040531  T
Q  108 tttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactc 207  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37040532 tttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattttctccactc 37040631  T
Q  208 tctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatga 307  Q
    |||              |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37040632 tctcacacacaca----agagatacaatatagtgttttccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagagatga 37040727  T
Q  308 tacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcact 407  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  37040728 tacccacccgatgtatttttcccacactctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtattttcact 37040827  T
Q  408 tctgcttcaat 418  Q
    |||||||||||    
T  37040828 tctgcttcaat 37040838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 409 - 613
Target Start/End: Complemental strand, 15300579 - 15300375
Alignment:
Q  409 ctgcttcaatcccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattttgcctcagttgttgataaggct 508  Q
    |||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15300579 ctgcttcattcccaattgatcatgaattctttttagccaaagcatttccttccctgcttcagccatggcaatatattctgcctcagttgttgataaggct 15300480  T
Q  509 acacatttttgcaatttagattgccaagatacagctccccttgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatat 608  Q
    ||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15300479 acacatttttgcaatttagattgccaagatatagctcaccctgcaaaagcaaacacaattcctgaagcagactttctaccatccaggtcacctgccatat 15300380  T
Q  609 ccgca 613  Q
    |||||    
T  15300379 ccgca 15300375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 11 - 413
Target Start/End: Complemental strand, 15290588 - 15290195
Alignment:
Q  11 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa-gagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaacaccaat 106  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||  ||||           |||||||||||    
T  15290588 gctcgacgagcttaacgcaattgtaaattaaaatttcaaaatccaaaaagagattggatcttgcagcgcagccttagcgataaaaaaaatgaacaccaat 15290489  T
Q  107 atttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccact 206  Q
    |||||||||||||||||||||||||| |||| | ||||||||||||||||||| ||| || |||||||||||| ||||||||||||||||||||||||||    
T  15290488 atttaacgtggaaaaccctctaataccgaggtataaaccacgggacaaactccaaaagattttccactatatttaagaatattacaatattctctccact 15290389  T
Q  207 ctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg 306  Q
    ||||              |||||||||||||||||||| |||||||||| ||| |||||| ||||||||  ||||  |||||||||||||||||||||||    
T  15290388 ctct----tacacacacaagagatacaatatagtgttt-ccgtgagacccactcctattcgaatgctat--tatttcagcacctagaagttatagagatg 15290296  T
Q  307 atacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagc---tttgtattct 403  Q
    ||||||||||||||||||||| ||||||| |||||||||| |||||||||||      |||||||||||||||  ||||||||||||   |||||||| |    
T  15290295 atacccacccggtgtattttt-ccacactttctggatttagtcaacactcta------ttctcacacacttct--acacacagaagcttttttgtatttt 15290205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 11 - 418
Target Start/End: Complemental strand, 12099355 - 12098958
Alignment:
Q  11 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacaccaatattt 110  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||  ||||||||||| || || ||||        |||| | ||||||||    
T  12099355 gctcgacgagtttaacgcgagtgtaaattaaaattccaaaatccaaaagagatatgatcttgcagctcaccgatagcgataaaaatgaaaagcaatattt 12099256  T
Q  111 aacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct 210  Q
     ||||| |||||||||||||   || |||||||||| ||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||    
T  12099255 tacgtgaaaaaccctctaatgacgaaggaaaaaccaagggacaaactccgaaaaaatttcaactatattaaagaatattacaatattctctccactctct 12099156  T
Q  211 nnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatac 310  Q
                  ||||| ||||||| |||||||  |||||||  ||| |||||| |||| |||||| ||||| |||||| ||||||||||||||||||    
T  12099155 ----tacacgcacaagagacacaatattgtgtttctagtgagactcactcctattcaaatgatattattttataacacctaaaagttatagagatgatac 12099060  T
Q  311 ccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttct 410  Q
     ||| |  | ||||||  | | |  ||||| ||||||||||||||||||||||| | ||||| ||||||  ||||||| || ||||||| | ||||||||    
T  12099059 tcactcaatctatttt--cgaga--ctctgaatttactcaacactctatttttcctttcacatacttct--acacacaaaaactttgtagtttcacttct 12098966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 153 - 384
Target Start/End: Complemental strand, 12082227 - 12082002
Alignment:
Q  153 aaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgag 252  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||              |||||||||||||||||||||   ||||    
T  12082227 aaactccaaaaaatattccactatattaa-gaatattacaatattttctccactctcttacacggaaa----agagatacaatatagtgtttctaatgag 12082133  T
Q  253 acctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaac 352  Q
    ||   || |||||| |||| |||||| ||||||| |||||||||||||||||| ||||| ||||| | |||||||||| |  | ||||||||||| ||||    
T  12082132 actcgctcctattcaaatgttattattttatagcgcctagaagttatagagataatacctacccgatatatttttccc-ctttttctggatttacccaac 12082034  T
Q  353 actctatttttcttctcacacacttctacaca 384  Q
    |||||| ||||||  |||||||||||||||||    
T  12082033 actctaattttctgatcacacacttctacaca 12082002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 15302960 - 15302900
Alignment:
Q  355 tctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttc 415  Q
    |||||||||  |||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  15302960 tctatttttgctctcacacacttctacacacacagaagctttgtattttcaattctgcttc 15302900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 12084745 - 12084669
Alignment:
Q  11 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagc 87  Q
    |||| ||||||||||| | || ||||||||||||| |||||||||| ||| ||||||||||| |||||| |||||||    
T  12084745 gctcaacgagcttaacacgagggtaaattaaaatttcaaaatccaatagacattggatcttgtagcgcaacggtagc 12084669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 210
Target Start/End: Original strand, 2757307 - 2757418
Alignment:
Q  98 aacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatatt 197  Q
    |||||||||||||||  || ||| |||| |||| || | |||||||||| | |||||| |  ||||| |||||||||||||| || |||||| || ||||    
T  2757307 aacaccaatatttaatatgaaaacccctttaatgcttaaggaaaaaccatgagacaaattttgaaaa-tattccactatatttaaaaatattgcactatt 2757405  T
Q  198 ctctccactctct 210  Q
    |||||||||||||    
T  2757406 ctctccactctct 2757418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 2757236 - 2757273
Alignment:
Q  28 caagtgtaaattaaaattccaaaatccaaaagagattg 65  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  2757236 caagtgtaaattaaaattccaaaattcaaaagaaattg 2757273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 415
Target Start/End: Original strand, 29106886 - 29107282
Alignment:
Q  13 tcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacaccaatatttaa 112  Q
    |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||        |||||||||||||||||    
T  29106886 tcgaggagcttaatgcaagtgtaaattaaaattccaaaatccaaaaaagattggatcttgcagcgcagcggtagcgttaaaaatgaacaccaatatttaa 29106985  T
Q  113 cgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnn 212  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  29106986 cgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctta 29107085  T
Q  213 nnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgata-cc 311  Q
                |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||| ||    
T  29107086 cacacaca----agagatacaa-atagtgtttcccgtgagacctacttctattctaatgctattattttttagcacctagaagttataaagatgataccc 29107180  T
Q  312 cacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctg 411  Q
    |||||  |||||||||||||||||||||||||||||||||||  ||||||||  ||||||||||||||||| ||| ||||||||||||||  ||||||||    
T  29107181 cacccaatgtatttttcccacactctctggatttactcaaca--ctattttttctctcacacacttctacatacagagaagctttgtatttccacttctg 29107278  T

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Target: chr5; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 11 - 415
Target Start/End: Original strand, 42910999 - 42911399
Alignment:
Q  11 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacaccaatattt 110  Q
    ||||||||||||||||||||||| |||||||||||  ||||||||||||||||| |||||||||||||||||| | |        |||||||||||||||    
T  42910999 gctcgacgagcttaacgcaagtggaaattaaaattttaaaatccaaaagagattagatcttgcagcgcagcggcaacgataaaaatgaacaccaatattt 42911098  T
Q  111 aacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct 210  Q
    ||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  42911099 aacatggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaa-tattccactatatttaagaatattacaatattctctccactctct 42911197  T
Q  211 nnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatac 310  Q
                  | ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  42911198 cacacacaca----aaagatacaatatagtgtttcccttgagacctacttctattctaatgctattattttatagcaccaagaagttatagagatgatac 42911293  T
Q  311 ccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgt-attctcacttc 409  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||  || |||||||    
T  42911294 ccacccagtgtattttttccacactctctggatttactcaacactctattttttctctcacacacttctacacacacagaagctttgtgtttttcacttc 42911393  T
Q  410 tgcttc 415  Q
    ||||||    
T  42911394 tgcttc 42911399  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 97 - 187
Target Start/End: Original strand, 38997230 - 38997320
Alignment:
Q  97 gaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata 187  Q
    ||||| |||||||| |||| |||||||||||||||  ||  ||||||| |||||||||||||| ||||||| |||| ||||||||||||||    
T  38997230 gaacagcaatattttacgtcgaaaaccctctaatatcgaacgaaaaactacgggacaaactccaaaaaataatccattatattaaagaata 38997320  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 38994709 - 38994779
Alignment:
Q  15 gacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggta 85  Q
    ||||| ||||| || |||||||||||||||||||||| |||||  | |||||||||||||| |||||||||    
T  38994709 gacgatcttaatgctagtgtaaattaaaattccaaaacccaaacaaaattggatcttgcagtgcagcggta 38994779  T

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Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 415
Target Start/End: Complemental strand, 8539542 - 8539139
Alignment:
Q  11 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn-tgaacaccaatatt 109  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |         |||||| |||||||    
T  8539542 gctcgacgagcttaacgcaagtgtaaattaaaattccaaattctaaaagagattggatcttgcagcgcagcggtaacaataaaaaatgaacatcaatatt 8539443  T
Q  110 taacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctc 209  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||    
T  8539442 taacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaagatattccactatatttaagaatattacaatattatctccactctc 8539343  T
Q  210 tnnnnnnnnnnnnnnagagatacaatat---agtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg 306  Q
    |              |||||||||||||   ||||||||| |||||||| ||| |||||| | ||||||||| ||| |||||||| ||||||||||||||    
T  8539342 ttacacacaca----agagatacaatattatagtgtttcc-gtgagacccactcctattcgattgctattattttacagcacctaaaagttatagagatg 8539248  T
Q  307 atacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcac 406  Q
    ||||||| ||| |||||||||||||||||||||| ||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  8539247 atacccatccgatgtatttttcccacactctctgaatttactgaacactatatttttcctctcacacacttctacacacacagaagctttgtattttcac 8539148  T
Q  407 ttctgcttc 415  Q
    |||||||||    
T  8539147 ttctgcttc 8539139  T

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Target: chr3 (Bit Score: 133; Significance: 7e-69; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 226 - 414
Target Start/End: Complemental strand, 51302306 - 51302118
Alignment:
Q  226 gagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtattt 325  Q
    |||||||||||||||||||||||||||||| ||| |||||| ||||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||||    
T  51302306 gagatacaatatagtgtttcccgtgagacccactcctattcgaatgcaattgttttatagcacctagaagttatagagatgattcccacccggtgtattt 51302207  T
Q  326 ttcccacactctctggatttactcaacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgctt 414  Q
    |  ||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| |||||| |||||    
T  51302206 tatccacactctctggatttactcaatactctatttttcctcacacacacttctacacacacagaagctttgtattttcacttatgctt 51302118  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 51303011 - 51302937
Alignment:
Q  13 tcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagc 87  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  51303011 tcgacgagcttaatgcaagtgtaaattaaaatttcaaaatccaaaacagattggatcttgcagcgcagcggtagc 51302937  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 51302344 - 51302308
Alignment:
Q  96 tgaacaccaatatttaacgtggaaaaccctctaatac 132  Q
    |||||||||||||||||||||||||||||||||||||    
T  51302344 tgaacaccaatatttaacgtggaaaaccctctaatac 51302308  T

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Target: chr6 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 2100205 - 2100379
Alignment:
Q  11 gctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattgga-tcttgcagcgcagcggtagcnnnnnnnntgaacaccaatatt 109  Q
    |||||||||||||||| ||||||||||||||||||||||||| || |||||||| || | ||||||| || || ||          |||||| |||||||    
T  2100205 gctcgacgagcttaacacaagtgtaaattaaaattccaaaattcataagagatttgaattttgcagcacaacgataatgataaaattgaacatcaatatt 2100304  T
Q  110 taacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata 187  Q
    ||| |||||||||||| ||||| |||| |||||||   ||| ||||||||||||||||||||||||||||||||||||    
T  2100305 taaggtggaaaaccctttaataatgagcgaaaaac---ggggcaaactccgaaaaatattccactatattaaagaata 2100379  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 180 - 210
Target Start/End: Original strand, 2100723 - 2100753
Alignment:
Q  180 aaagaatattacaatattctctccactctct 210  Q
    |||||||||||||||||||||||||||||||    
T  2100723 aaagaatattacaatattctctccactctct 2100753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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