View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5373-Insertion-8 (Length: 456)
Name: NF5373-Insertion-8
Description: NF5373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5373-Insertion-8 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 36627853 - 36628093
Alignment:
| Q |
8 |
agtatttggatagaagttgagataaggattttcgaagttgtgatatttttgaattttggtctatactcttgtttgggttgtaaaagtaaagcaatggcgc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36627853 |
agtatttggatagaagttgagataaggattttcgaagttgtgatatttttgaattttggtctatactcttgtttgggttgtaaaaataaagcaatggcgc |
36627952 |
T |
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| Q |
108 |
atagtttctgaaaataatgttgtctatgaatgaaagtgggtaaagtttgaggtgagatggagttggtgatgaaggtttgatggtttctcttgaaagtaat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36627953 |
atagtttctgaaaataatgttgtctatgaatgaaagtgggtaaagtttgaggtgagatggagttggtgatgaaggtttgatggtttctcttgaaagtaat |
36628052 |
T |
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| Q |
208 |
tctatttccatggtaattaattcatgaaatactttaatatt |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
36628053 |
tctatttccatggtaattaattcatgaaatactttaatatt |
36628093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 36622616 - 36622917
Alignment:
| Q |
8 |
agtatttggatagaagttgagataaggattttcgaagttgtgatatttttgaattttggtctatactcttgtttgggttgtaaaagtaaagcaatggcgc |
107 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||| ||| || | ||||||||||||||||||||| |||||| |
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| T |
36622616 |
agtatttagatagaagttgagataaggattttcggagttgtgatgtttttgaattttgatctctatttccgtttgggttgtaaaagtaaagtaatggcag |
36622715 |
T |
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| Q |
108 |
atagtttctgaaaataatgttgtctatgaatgaaagtgggtaaagtttgaggtgagatggagttggtgatgaaggtttgatggtttctcttgaaagtaat |
207 |
Q |
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| T |
36622716 |
atagttactgcaaacaatgttgtctatgaaagaaagtggataaagtttaaggtgagaaggagttggtgatgaaggtttgatggtttctcttgaaagtaat |
36622815 |
T |
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| Q |
208 |
tctatttccatggtaattaattcatgaaat-actttaatattgattgaatgtactgccttaacattaccacaagtggttatatagtgcataaattataag |
306 |
Q |
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||||||||||||||||| ||| ||| || |||| |||||||||||||||| || | |||| || |||||||||||||||| || || ||||||||| |
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| T |
36622816 |
tctatttccatggtaatcaatctatgctatgacttgtatattgattgaatgtattgacataactatatcacaagtggttatataatgaatgaattataag |
36622915 |
T |
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| Q |
307 |
at |
308 |
Q |
| |
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|| |
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| T |
36622916 |
at |
36622917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 244 - 456
Target Start/End: Original strand, 36628124 - 36628334
Alignment:
| Q |
244 |
atattgattgaatgtactgccttaacattaccacaagtggttatatagtgcataaattataagattaagactagtatgaagcatgaactaacgtatgttt |
343 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
36628124 |
atattgattgaatgtactgccttaacaataccacaagtggttatatagtgcataaattataagattaagactagtatgaagcatgaacaaacgtatcttt |
36628223 |
T |
|
| Q |
344 |
tggtnnnnnnnnnnnnntcacacagttgaccaaagtgtattattttaggaaagagatacatttgctttgttatcggtatgaccaaatcaatttttgaatt |
443 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36628224 |
tggt--aaaaaaaaaaatcacacagttgaccaaagtgtattattttaggaaaaagatacatttgctttgttatcggtatcaccaaatcaatttttgaatt |
36628321 |
T |
|
| Q |
444 |
tgtttttgtagtg |
456 |
Q |
| |
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|||||||| |||| |
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| T |
36628322 |
tgtttttgcagtg |
36628334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 49 - 229
Target Start/End: Original strand, 36634030 - 36634207
Alignment:
| Q |
49 |
gatatttttgaattttggtctatactcttgtttgggttgtaaaagtaaagcaatggcgcatagtttctgaaaataatgttgtctatgaatgaaagtgggt |
148 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||| |||||| |||||||||||| || |||||||| |
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| T |
36634030 |
gatatttttgaattttggtcgatactcttgtttggattgtaaaagtaaagcaatggcacatagttactgaaataaatgttgtctattaaagaaagtggaa |
36634129 |
T |
|
| Q |
149 |
aaagtttgaggtgagatggagttggtgatgaaggtttgatggtttctcttgaaagtaattctatttccatggtaattaatt |
229 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| |
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| T |
36634130 |
aaagtttgagatga---ggagttggtgatgaaggtttgatggtttctcttgaaagtaattcaatctccatggtaatcaatt |
36634207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 34329103 - 34328889
Alignment:
| Q |
10 |
tatttggatagaagttgagataaggattttcgaagttgtgatatttttgaattttggtctatactcttgtttgggttgtaaaagtaaagcaatggcgcat |
109 |
Q |
| |
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|||||||||| |||||||||||| ||||| || | |||||| ||||| ||||||||| || |||||||| |||||||||||||| |||||| ||| |
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| T |
34329103 |
tatttggataaaagttgagataaagatttacgtaattgtgaaattttgacattttggtcactatctttgtttggtttgtaaaagtaaagtaatggcacat |
34329004 |
T |
|
| Q |
110 |
agtttctgaaaataatgttgtctatgaatgaaagtgggtaaagtttgaggtgagatggagttggtgatgaaggtttgatggtttctcttgaaagtaattc |
209 |
Q |
| |
|
|||| | | | ||||||||||||||| ||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
34329003 |
agttacgcatcaaaatgttgtctatgaaagaaagtgggtatattttgaggtgagaaggagttggtgatgaaggtttgatggtttctctagaaattaattc |
34328904 |
T |
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| Q |
210 |
tatttccatggtaat |
224 |
Q |
| |
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|||||||||||||| |
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| T |
34328903 |
aatttccatggtaat |
34328889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 218
Target Start/End: Complemental strand, 34320197 - 34319987
Alignment:
| Q |
8 |
agtatttggatagaagttgagataaggattttcgaagttgtgatatttttgaattttggtctatactcttgtttgggttgtaaaagtaaagcaatggcgc |
107 |
Q |
| |
|
||||||| |||| |||||||||||| |||||||||||| |||||| ||| ||||||||||| ||| || ||||| ||||||||| ||| | ||| | |
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| T |
34320197 |
agtatttagataaaagttgagataaagattttcgaagtagtgatactttggaattttggtcactacactcatttggattgtaaaagaaaatgactggaac |
34320098 |
T |
|
| Q |
108 |
atagtttctgaaaataatgttgtctatgaatgaaagtgggtaaagtttgaggtgagatggagttggtgatgaaggtttgatggtttctcttgaaagtaat |
207 |
Q |
| |
|
||| | |||| |||||| || ||||| |||||||| |||| | ||||||||| |||||||||||||||||||||||||||||||| |||| |||| |
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| T |
34320097 |
atataaacgaaaaaaaatgttatcaatgaaagaaagtggataaattctgaggtgagtaggagttggtgatgaaggtttgatggtttctctagaaattaat |
34319998 |
T |
|
| Q |
208 |
tctatttccat |
218 |
Q |
| |
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|| |||||||| |
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|
| T |
34319997 |
tcaatttccat |
34319987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 45306977 - 45307037
Alignment:
| Q |
8 |
agtatttggatagaagttgagataaggattttcgaagttgtgatatttttgaattttggtc |
68 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
45306977 |
agtatttggatagaatttgagataaggattttctgagttgtgatatttttgaattttggtc |
45307037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 45307140 - 45307192
Alignment:
| Q |
166 |
ggagttggtgatgaaggtttgatggtttctcttgaaagtaattctatttccat |
218 |
Q |
| |
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|||||||| ||||||||||||||||||||||| |||| |||||| |||||||| |
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| T |
45307140 |
ggagttggcgatgaaggtttgatggtttctctggaaactaattccatttccat |
45307192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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