View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5373-Insertion-9 (Length: 309)
Name: NF5373-Insertion-9
Description: NF5373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5373-Insertion-9 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 10766383 - 10766084
Alignment:
| Q |
7 |
ataagtatgattgtaaccatattatatcattgaattttgtatagttgattagtttgatagggtagggaatattttccaccaagagaaacctaatatttgt |
106 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10766383 |
ataagtatgattgtaaccatat---atcattgaattttgtatagttgattagtttgatagggtagggaatattttccagcaagagaaacctaatatttgt |
10766287 |
T |
|
| Q |
107 |
tttattcgtagaagcttatgatttcaaatatatgaattgtgaaaaagtttgttttgccaaagaaagaaaccattacaaaattggaagaaatggaactttc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10766286 |
tttattcgtagaagcttatgatttcaaatatatgaattatgaaaaagtttgttttgccaaagaaagaaaccattacaaaattggaagaaatggaactttc |
10766187 |
T |
|
| Q |
207 |
aaaagatgagtagaatgctaggacatgcctaacatagattcatctcgacctcagtgtcatctttgtcctagattacaaaatttgtactaatgttacaact |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10766186 |
aaaagatgagtagaatgctaggacatgcctaacatagattcatctcgacctcagtgtcatctttgtcctagactacaaaatttgtactaatgttacaact |
10766087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University