View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5373_low_1 (Length: 851)
Name: NF5373_low_1
Description: NF5373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5373_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 80 - 574
Target Start/End: Complemental strand, 19951135 - 19950651
Alignment:
| Q |
80 |
ggtccatggctttaagtagtgccatgtggtgcactatgaaccctagctccaccaccaaatgtaattctcttctttaattgttatggattgttgagtttac |
179 |
Q |
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| T |
19951135 |
ggtccatggctttaagtagtgccatgtggtgcactatgaaccctagctccaccaccaaatgtaattctcttctttaattgttatggattgttgagtttac |
19951036 |
T |
|
| Q |
180 |
acacaaattaacgtgaaattcacatggtcggtttgttaatttgtagttgaaggaaatgtgtatgtgtggtgtcaaatagttggtaatcaattgcatgtcc |
279 |
Q |
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| T |
19951035 |
acacaaattaacgtgaaattcacatggtcggtttgttaatttgtagttgaaggaaatgtgtatgtgtggtgtcaaatagttggtaatcaattgcatgtcc |
19950936 |
T |
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| Q |
280 |
c--tatgaccata-caaaaaacaatgatttgcttttcaaaatatatatcattttaattaagaaaaacaatgattttccttcaa--nnnnnnnnaggaaaa |
374 |
Q |
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| T |
19950935 |
ctatatgaccataccaaaaaacaatgatttgcttttcaaaatatatatcattttaattaagaaaaacaatgattttccttcaattttttttttaggaaaa |
19950836 |
T |
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| Q |
375 |
caatgatttgaagcataaaccgaaatgacgaacatcaagatcaaagttaataattcatcgatttgggaacgaaatcaaaccattcaaacaatcaaactaa |
474 |
Q |
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| T |
19950835 |
caatgatttgaatcataaaccgaaatgacgaacatcaagatcaaagttaataattcatcgatttgggaacg-----------------caatcaaactaa |
19950753 |
T |
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| Q |
475 |
acaataggaaaataacacattttttaatactatatatttttcaatcaca--nnnnnnnnnattaaaattcatacgagtttgcgaaattttgtggagtaca |
572 |
Q |
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| T |
19950752 |
acaataggaaaataacacattttttaatactatatatttttcaatcacatttttttttttattaaaattcatacgagtttgcaaaattttgtggagtaca |
19950653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 641 - 783
Target Start/End: Complemental strand, 19950584 - 19950441
Alignment:
| Q |
641 |
gatatacattcacgattgaccacttgatcagtccatttggtttcgatttttaaaatattattggttttagtttannnnnnnnaaaaggtgtgtagcaac- |
739 |
Q |
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| T |
19950584 |
gatatacattcacgattgatcacttgatcagtccatttgatttcgatttttaaaatattattggttttagttttttttttttaaaaggtgtgcagcaaca |
19950485 |
T |
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| Q |
740 |
aacccacaatttgttttgttgggaacaatatttatttatttatt |
783 |
Q |
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| T |
19950484 |
aacccacaatttgttttgttgggaacaatatttatttatttatt |
19950441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 19951186 - 19951129
Alignment:
| Q |
10 |
ataatactccgatagtgatattaccaacccttc----atggttgaagttgaggtccat |
63 |
Q |
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| T |
19951186 |
ataatactccgatagtgatattaccaaccctttctttatggttgaagttgaggtccat |
19951129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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