View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5373_low_4 (Length: 215)
Name: NF5373_low_4
Description: NF5373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5373_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 120; Significance: 1e-61; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 23247249 - 23247428
Alignment:
| Q |
20 |
aatatcttcatactcatgatactcaaagctatgtgtaggggacattagtgccatattcctccacaactctggcatattcaacatttcctgctcttcttct |
119 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||| || ||| || |
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| T |
23247249 |
aatatcgtcatactcatgatactcaaagctatgtgtaggtgacatcaacgccatattcctccacaactctggcatattcaacatttcctcctgttcatca |
23247348 |
T |
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| Q |
120 |
acttccacacaaaacctattcaggtcctttgtggcgacgacatcttcgacaatttcaatattgttagtcattaaagtatt |
199 |
Q |
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| T |
23247349 |
acttccacacaaaacatattcagctcctttgtggcgacgacatctacgatagtgtcaatattgttagtcattaaagtatt |
23247428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 23257634 - 23257778
Alignment:
| Q |
20 |
aatatcttcatact---catgatactcaaagctatgtgtaggggacattagtgccatattcctccacaactctggcatattcaacatttcctgctcttct |
116 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
23257634 |
aatatcttcatactgatcatgatactcaaagctatgtgtaggggacattagtgccatattcctcaacaattctggcatattcaacatttcctgctcttct |
23257733 |
T |
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| Q |
117 |
tctacttccacacaaaacctattcaggtcctttgtggcgacgaca |
161 |
Q |
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| T |
23257734 |
tcgacttccacacaaaacatattcaactcctttgtggccacgaca |
23257778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 33 - 199
Target Start/End: Original strand, 23266211 - 23266371
Alignment:
| Q |
33 |
tcatgatactcaaagctatgtgtaggggacattagtgccatattcctccacaactctggcatattcaacatttcctgctcttcttctacttccacacaaa |
132 |
Q |
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| T |
23266211 |
tcatgatactcaaagctatgtgtaggggacattagtgccatattcctccaaaactccggcatattcaacatttcc------tcttcttcttccacacaaa |
23266304 |
T |
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| Q |
133 |
acctattcaggtcctttgtggcgacgacatcttcgacaatttcaatattgttagtcattaaagtatt |
199 |
Q |
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| T |
23266305 |
acatattcaactcctttgtggcgacaacagctacaacagtctcaatgttggtaatcattatagtatt |
23266371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 23251661 - 23251798
Alignment:
| Q |
20 |
aatatcttcatact---catgatactcaaagctatgtgtaggggacattagtgccatattcctccacaactctggcatattcaacatttcctgctcttct |
116 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
23251661 |
aatatcttcatactgatcatgatacccaaagctatgtgtaggggacattagtgccatattcctccacaactctggcatattcaacacttc---ctcttct |
23251757 |
T |
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| Q |
117 |
tctacttccacacaaaacctattcaggtcctttgtggcgac |
157 |
Q |
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| T |
23251758 |
tcgacttcaacacgaaacatattcagctcctgtgttgcgac |
23251798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 23289614 - 23289729
Alignment:
| Q |
23 |
atcttcatactcatgatactcaaagctatgtgtaggggacattagtgccatattcctccacaactctggcatattcaacatttcctgctcttcttctact |
122 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||| |||| ||| ||| |
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| T |
23289614 |
atcttcatactcatg---ctcaaaactatgtgtaggggacattagtgccatatttttccacaactcttgcatattcaacacttcctcttctttttcgact |
23289710 |
T |
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| Q |
123 |
tccacacaaaacctattca |
141 |
Q |
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|||||||||||| |||||| |
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| T |
23289711 |
tccacacaaaacatattca |
23289729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 48 - 141
Target Start/End: Original strand, 23283296 - 23283389
Alignment:
| Q |
48 |
ctatgtgtaggggacattagtgccatattcctccacaactctggcatattcaacatttcctgctcttcttctacttccacacaaaacctattca |
141 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| ||||| |||| ||| ||||||||||||||| |||||| |
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| T |
23283296 |
ctatgtgtaggggacattaacgccatattcctccacatctctgacatattcaacacttcctcttctttttcgacttccacacaaaacatattca |
23283389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 23391095 - 23391174
Alignment:
| Q |
20 |
aatatcttcatactcatgatactcaaagctatgtgtaggggacattagtgccatattcctccacaactctggcatattca |
99 |
Q |
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||||| |||||| |||| |||| || ||||||||||||| ||||||||||||||||||||| ||||||||||||| |||| |
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| T |
23391095 |
aatattttcatattcattatacccagagctatgtgtaggagacattagtgccatattcctcaacaactctggcatgttca |
23391174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 41 - 124
Target Start/End: Original strand, 23593009 - 23593092
Alignment:
| Q |
41 |
ctcaaagctatgtgtaggggacattagtgccatattcctccacaactctggcatattcaacatttcctgctcttcttctacttc |
124 |
Q |
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||||| ||||||||||||||||||||| |||||||||||| || ||||||| || ||||||| ||||| ||||| |||| |||| |
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| T |
23593009 |
ctcaacgctatgtgtaggggacattagagccatattcctcaacgactctggaatgttcaacacttcctcctctttttcttcttc |
23593092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 23582869 - 23582948
Alignment:
| Q |
20 |
aatatcttcatactcatgatactcaaagctatgtgtaggggacattagtgccatattcctccacaactctggcatattca |
99 |
Q |
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||||| || |||||||| |||| | |||||||||||||| |||||||| |||||||| ||||||| |||| |||| |||| |
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| T |
23582869 |
aatatattgatactcataataccccaagctatgtgtaggagacattagcgccatattactccacatctcttgcatgttca |
23582948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 23586752 - 23586831
Alignment:
| Q |
20 |
aatatcttcatactcatgatactcaaagctatgtgtaggggacattagtgccatattcctccacaactctggcatattca |
99 |
Q |
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||||| || |||||||| |||| | |||||||||||||| |||||||| |||||||| ||||||| |||| |||| |||| |
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| T |
23586752 |
aatatattgatactcataataccccaagctatgtgtaggagacattagcgccatattactccacatctcttgcatgttca |
23586831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 23633835 - 23633870
Alignment:
| Q |
45 |
aagctatgtgtaggggacattagtgccatattcctc |
80 |
Q |
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||||||||||||||||||||||| |||||||||||| |
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| T |
23633835 |
aagctatgtgtaggggacattagagccatattcctc |
23633870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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