View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5374-Insertion-10 (Length: 180)
Name: NF5374-Insertion-10
Description: NF5374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5374-Insertion-10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 2e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 2e-81
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 44501376 - 44501204
Alignment:
| Q |
8 |
tttatctcttcacgattcctctatctcactacacactctcaatttcagccataatggtcgcttggagtttcacctactcaaaaggattgtgaattgtgct |
107 |
Q |
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| T |
44501376 |
tttatctcttcacgattcctctatctcactacacactctcaatttcagccataatggttgcttggagtttcacctactcaaaaggattgtgaattgtgct |
44501277 |
T |
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| Q |
108 |
attttacacaaagtccagctgtcaggacttagtgtccttgctgacaatgcacaaattccgcctagcatatttt |
180 |
Q |
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| T |
44501276 |
atttcacacatagtccagcggtcaggacttagtgtccatgctgacaatgcacaaattccgcctagcatatttt |
44501204 |
T |
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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 137
Target Start/End: Complemental strand, 7976683 - 7976609
Alignment:
| Q |
63 |
ggtcgcttggagtttcacctactcaaaaggattgtgaattgtgctattttacacaaagtccagctgtcaggactt |
137 |
Q |
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| T |
7976683 |
ggtcgcttagagcctcacttactcaaaaggattgtgaattatgctatttcacacaatgtccagcggttaggactt |
7976609 |
T |
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