View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5374-Insertion-3 (Length: 553)
Name: NF5374-Insertion-3
Description: NF5374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5374-Insertion-3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 243 - 553
Target Start/End: Original strand, 38644978 - 38645293
Alignment:
| Q |
243 |
ggaggctagcgtgagcgatcaaaacaggtctctcacggtgcaaattgagtttgcaccattagatatattatttatttattgtgcggccaagatgattcac |
342 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
38644978 |
ggaggctagcgtgagcgaccaaaacaggtctctcacggtgcaaattgagtttgcaccattagatatattaattatttattgtgcggtcaagatgattcac |
38645077 |
T |
|
| Q |
343 |
ctgtaacttgtttgaacaatt------cctttttggtgaatgctatggtgaggcaggggtcatgtacttcacatgtgaggaacaaaatataaccgcaaga |
436 |
Q |
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| T |
38645078 |
ctgtaacttgtttgaacaataagtatccctttttggtgaatgctatggtgagacaggggtcatgtacttcacatgtgaggaacaaaatataaccgcaaga |
38645177 |
T |
|
| Q |
437 |
tatgatcaatggttagcatctgatgaaattaatagtgagaacacataatcttttcaatcacaatatatccaaaattgattttcaaattaaaataattttg |
536 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38645178 |
tatgatcgatggttagcatatgatgaaattaatagtgagaacacataatcttttcaatcacaatatatccaaaattgattttcaaattaaaataa-tttg |
38645276 |
T |
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| Q |
537 |
ttttatctctttctttc |
553 |
Q |
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||||||||||||||||| |
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| T |
38645277 |
ttttatctctttctttc |
38645293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 193; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 571002 - 571210
Alignment:
| Q |
8 |
acaacatggatagtt-aacaattttaaggtaggtcgtatgagaaagtgactcaaggcagcctaatcgcttttatataccaaaattgaattcaaacatgta |
106 |
Q |
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| T |
571002 |
acaacatggatggtttaacaattttaaggtaggtcgtatgagaaagtgactcaaggcagcctaatcgcttttatataccaaaattgaattcaaacatgta |
571101 |
T |
|
| Q |
107 |
ctaagaaagacttaggccaatgatttggctagaaatacatgatagaacattatgattttgttttgttctcgccaactatacctactttaattttggtatg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
571102 |
ctaagaaagacttaggccaatgatttggctagaaatacatgatagaacattatgattttgttttgttctcgccaactatacctactttaattttgatatg |
571201 |
T |
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| Q |
207 |
acttgtctg |
215 |
Q |
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||||||||| |
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| T |
571202 |
acttgtctg |
571210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 5969429 - 5969379
Alignment:
| Q |
262 |
caaaacaggtctctcacggtgcaaattgagtttgcaccattagatatatta |
312 |
Q |
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||||||| |||||||||||| |||||||| ||| ||||||||||||||||| |
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| T |
5969429 |
caaaacatgtctctcacggtccaaattgatttttcaccattagatatatta |
5969379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 46089728 - 46089686
Alignment:
| Q |
270 |
gtctctcacggtgcaaattgagtttgcaccattagatatatta |
312 |
Q |
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||||||||||||||||||||| ||| ||||| ||||||||||| |
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| T |
46089728 |
gtctctcacggtgcaaattgatttttcaccactagatatatta |
46089686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 568587 - 568627
Alignment:
| Q |
103 |
tgtactaagaaagacttaggccaatgatttggctagaaata |
143 |
Q |
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|||||||||||| ||||||| ||||||||| |||||||||| |
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| T |
568587 |
tgtactaagaaaaacttaggtcaatgattttgctagaaata |
568627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 4e-70; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 243 - 534
Target Start/End: Original strand, 33641513 - 33641802
Alignment:
| Q |
243 |
ggaggctagcgtgagcgatcaaaacaggtctctcacggtgcaaattgagtttgcaccattagatatattatttatttattgtgcggccaagatgattcac |
342 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||| |||||||||| ||| ||||||| ||||||||| ||||||||| || || ||||||||||| |
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| T |
33641513 |
ggaggccagcgtgagcgaccaaaacaggtctctcacgatgcaaattgaattttcaccattggatatattaattatttattatgtggtcaagatgattctt |
33641612 |
T |
|
| Q |
343 |
ctgtaacttgtttgaacaattcctttttggtgaatgctatggtgaggcaggggtcatgtacttcacatgtgaggaacaaaatataaccgcaagatatgat |
442 |
Q |
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|| | | || || || ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33641613 |
ttgaagaat-----aagtatcccatttgggtgaatgctatggtgaggcaggggtcatgtacttcacatgtgag-aacaaaatataaccgcaagatatgat |
33641706 |
T |
|
| Q |
443 |
caatggttagcatctgatgaaattaatagtgagaacacata----atcttttcaatcacaatatatccaaaattgattttcaaattaaaataattt |
534 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||| ||||||||| |||||| ||| |||||||||||||||||||||||||||| |
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| T |
33641707 |
caattgttagcttctgatgaaattaatagtgagaacacatatattttcttttcaaacacaattaatcaaaaattgattttcaaattaaaataattt |
33641802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 243 - 552
Target Start/End: Original strand, 13610032 - 13610338
Alignment:
| Q |
243 |
ggaggctagcgtgagcgatcaaaacaggtctctcacggtgcaaattgagtttgcaccattagatatattatttatttattgtgcggccaagatgattcac |
342 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| ||||||||| ||||||||| || || ||||||||||| |
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| T |
13610032 |
ggaggctagcgtgagcgaccaaaacaggtctctcacagtgcaaattgaattttcaccattggatatattaattatttattatgtggtcaagatgattctt |
13610131 |
T |
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| Q |
343 |
ctgtaacttgtttgaacaattcctttttggtgaatgctatggtgaggcaggggtcatgtacttcacatgtgaggaacaaaatataaccgcaagatatgat |
442 |
Q |
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|| | | || || || ||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
13610132 |
ttgaagaat-----aagtatcccattttggtgaatgctatggtgaggtaggggtcatgtagttcacatgtgag-aacaaaatataaccgcaagatatgat |
13610225 |
T |
|
| Q |
443 |
caatggttagcatctgatgaaattaatagtgagaacacata----atcttttcaatcacaatatatccaaaattgattttcaaattaaaataattttgtt |
538 |
Q |
| |
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|||| |||||| ||||||||||||||||||||||||||||| ||||||||| | |||| ||| ||||||||||||||||||||||||| ||| || |
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| T |
13610226 |
caattgttagcttctgatgaaattaatagtgagaacacatatattttcttttcaaactcaattaatcaaaaattgattttcaaattaaaataa-tttatt |
13610324 |
T |
|
| Q |
539 |
ttatctctttcttt |
552 |
Q |
| |
|
|| ||||||||||| |
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| T |
13610325 |
ttctctctttcttt |
13610338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 35239230 - 35239270
Alignment:
| Q |
246 |
ggctagcgtgagcgatcaaaacaggtctctcacggtgcaaa |
286 |
Q |
| |
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| T |
35239230 |
ggctagcgtgagcgatcaacataggtctctcacagtgcaaa |
35239270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 2e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 243 - 552
Target Start/End: Original strand, 54131178 - 54131484
Alignment:
| Q |
243 |
ggaggctagcgtgagcgatcaaaacaggtctctcacggtgcaaattgagtttgcaccattagatatattatttatttattgtgcggccaagatgattcac |
342 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||| ||| ||||||| ||||||||| ||||||||| || || ||||||||||| |
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|
| T |
54131178 |
ggaggctagcgtgagcgaccaaaacagatctctcacggtgcaaattgaattttcaccattggatatattaattatttattatgtggtcaagatgattctt |
54131277 |
T |
|
| Q |
343 |
ctgtaacttgtttgaacaattcctttttggtgaatgctatggtgaggcaggggtcatgtacttcacatgtgaggaacaaaatataaccgcaagatatgat |
442 |
Q |
| |
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|| | | || || || ||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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|
| T |
54131278 |
ttgaagaat-----aagtatcccattttggtgaatgctatggtgaggtaggggtcatgtaattcacatgtgag-aacaaaatataaccgcaagatatgat |
54131371 |
T |
|
| Q |
443 |
caatggttagcatctgatgaaattaatagtgagaacac----ataatcttttcaatcacaatatatccaaaattgattttcaaattaaaataattttgtt |
538 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||| || ||||||||| | |||| ||| ||||||||||||||||||||||||| ||| || |
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|
| T |
54131372 |
caattgttagcttctgatgaaattaatagtgagaacacgtatattttcttttcaaactcaattaatcaaaaattgattttcaaattaaaataa-tttatt |
54131470 |
T |
|
| Q |
539 |
ttatctctttcttt |
552 |
Q |
| |
|
|| ||||||||||| |
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|
| T |
54131471 |
ttctctctttcttt |
54131484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 365 - 468
Target Start/End: Complemental strand, 23508471 - 23508368
Alignment:
| Q |
365 |
ctttttggtgaatgctatggtgaggcaggggtcatgtacttcacatgtgaggaacaaaatataaccgcaagatatgatcaatggttagcatctgatgaaa |
464 |
Q |
| |
|
||||||||||||||||||||||||| |||||| | ||||||||| ||||| |||||||||||||||| |||||||||||||||| | |||||| |||| |
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| T |
23508471 |
ctttttggtgaatgctatggtgaggtaggggtaaagtacttcacttgtgatgaacaaaatataaccgtgagatatgatcaatggtcatgatctgaggaaa |
23508372 |
T |
|
| Q |
465 |
ttaa |
468 |
Q |
| |
|
|||| |
|
|
| T |
23508371 |
ttaa |
23508368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 325
Target Start/End: Original strand, 30731181 - 30731244
Alignment:
| Q |
262 |
caaaacaggtctctcacggtgcaaattgagtttgcaccattagatatattatttatttattgtg |
325 |
Q |
| |
|
||||||| |||| |||||||||||||||| ||| | ||||||||||||||| | | |||||||| |
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|
| T |
30731181 |
caaaacatgtctttcacggtgcaaattgatttttcgccattagatatattaataaattattgtg |
30731244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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