View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5374-Insertion-4 (Length: 547)
Name: NF5374-Insertion-4
Description: NF5374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5374-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 6 - 464
Target Start/End: Original strand, 28667880 - 28668339
Alignment:
| Q |
6 |
cagttgcaaagtgccgttggttacatccggaagaaaatttgaatacggacagagataataataacattaaaaaggtgcagggcaaaggcaaatatgccat |
105 |
Q |
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| T |
28667880 |
cagttgcaaagtgtcgttagttacatccggaagaaaatttgaatacggacagagataataataacattaaaaaggtgcagggcaaagggaaacatgccat |
28667979 |
T |
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| Q |
106 |
catacagcagaaggctcaaaccaaaatttggtgggaacgtgaaaatcctctcggagttgggtcatctttggattttccaaaaccagttgttgcttttgaa |
205 |
Q |
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| T |
28667980 |
catacaacagaaggcgcaaaccaaaatttggtgggaacgtgaaaatcctctcggagttgggtcatctttggctttttcaaaaccagttgttgcttttgaa |
28668079 |
T |
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| Q |
206 |
attgcggtgtctgatacgagaatagagcatcctgaacagcaagcttcaccttatattattgctctcgttgaaactgattttttccagaccgtagagcacc |
305 |
Q |
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| T |
28668080 |
attgcagtgtctgatacgacaatagagcatcctgaacaacaagcttcaccttctattattgctcccgttgaaactgattttttctagaccgtagagcacc |
28668179 |
T |
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| Q |
306 |
cagcagaaacacctcttgatggcggtaacaactcttttcatttcgcactcgaaaatg-tttatgatgaaattgctcataactctgatgtcgcaagcatag |
404 |
Q |
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| T |
28668180 |
caacagaaacacctcttgatggcggtaacaactcttttcatttcgcactcgaaaatgttttctgatgaaattgctcataactctgatgtcgcaagcatag |
28668279 |
T |
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| Q |
405 |
ccatcttagaaccagtgttacatgtccaacaagataatatggaacatccccctgcgcagc |
464 |
Q |
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| T |
28668280 |
ccatcttagaaccagtattacatgttcaacaagataatgtggaacatccccctgcgcagc |
28668339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 471 - 547
Target Start/End: Original strand, 28668382 - 28668458
Alignment:
| Q |
471 |
aaggtgtggcaaggttcactgctactgccaaactgcccaaacaacaccctcttgcaactttcattcctcattggtgt |
547 |
Q |
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| T |
28668382 |
aaggtgtggcaaccttcactgctactgccaaacttcccaaacaacaccctcttgcaactttcattccgcatcggtgt |
28668458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 404 - 469
Target Start/End: Original strand, 17257484 - 17257549
Alignment:
| Q |
404 |
gccatcttagaaccagtgttacatgtccaacaagataatatggaacatccccctgcgcagcaacag |
469 |
Q |
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| T |
17257484 |
gccatcttagaaccggtgttacatgttcaataagataatgtggaacctccccttgcgcagcaacag |
17257549 |
T |
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