View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5374-Insertion-5 (Length: 353)
Name: NF5374-Insertion-5
Description: NF5374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5374-Insertion-5 |
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| [»] chr3 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 6 - 353
Target Start/End: Complemental strand, 36104137 - 36103790
Alignment:
| Q |
6 |
caacactgactcaataaatgtcactattagatacatcatcatgcttctcatgatcgtcgaacaaatcctcaggagggtcgtagatgatcatatctgggaa |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36104137 |
caacactgactcaataaatgtcactattagatacatcatcatgcttctcatgatcgtcgaacaaatcctcaggagggtcgtagatgatcatatctgggaa |
36104038 |
T |
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| Q |
106 |
aacctccaaaaagtcatcttttattttctctcttaattcgggatatggaattagtccttttaatattacacggaaaggtaatgacagaggaggctcggga |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36104037 |
aacctccaaaaagtcatcttttattttctctcttaattcgggatatggaattagtccttttaatattacacggaaaggtaatgacagaggaggctcggga |
36103938 |
T |
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| Q |
206 |
gattgtctcatttcttcatatatgtccatggcctctgagggcataccactatcaagataggctcttaccatgtctccaaatgtatgctgatcaaataaaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36103937 |
gattgtctcatttcttcatatatgtccatggcctctgagggcataccactatcaagataggctcttacaatgtctccaaatgtatgctgatcaaataaaa |
36103838 |
T |
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| Q |
306 |
ctccctctcctttcaaatcatcccacaccctctttgtttcatccaccc |
353 |
Q |
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| T |
36103837 |
ctccctctcctttcaaatcatcccacaccctctttgtttcatccaccc |
36103790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 36142163 - 36142119
Alignment:
| Q |
309 |
cctctcctttcaaatcatcccacaccctctttgtttcatccaccc |
353 |
Q |
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| T |
36142163 |
cctctcctttcaaatcatcccacaccctctttgtttcatccaccc |
36142119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 6 - 353
Target Start/End: Complemental strand, 10857354 - 10857007
Alignment:
| Q |
6 |
caacactgactcaataaatgtcactattagatacatcatcatgcttctcatgatcgtcgaacaaatcctcaggagggtcgtagatgatcatatctgggaa |
105 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10857354 |
caacactgactcaataaatgtcacaattagattcatcatcatgcttctcatgatcgtcgaacaaatcctcaggagggtcgtagatgatcatatctgggaa |
10857255 |
T |
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| Q |
106 |
aacctccaaaaagtcatcttttattttctctcttaattcgggatatggaattagtccttttaatattacacggaaaggtaatgacagaggaggctcggga |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10857254 |
aacctccaaaaagtcatcttttattttctctcttaattcgggatatggaattagtccttttaatattacacggaaaggtaatgacagaggaggctcggga |
10857155 |
T |
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| Q |
206 |
gattgtctcatttcttcatatatgtccatggcctctgagggcataccactatcaagataggctcttaccatgtctccaaatgtatgctgatcaaataaaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10857154 |
gattgtctcatttcttcatatatgtccatggcctctgagggcataccactatcaagataggctcttacaatgtctccaaatgtatgctgatcaaataaaa |
10857055 |
T |
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| Q |
306 |
ctccctctcctttcaaatcatcccacaccctctttgtttcatccaccc |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10857054 |
ctccctctcctttcaaatcatcccacaccctctttgtttcatccaccc |
10857007 |
T |
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