View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5374-Insertion-7 (Length: 238)
Name: NF5374-Insertion-7
Description: NF5374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5374-Insertion-7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 52824381 - 52824611
Alignment:
| Q |
8 |
catgcgtaggatctgtgttcctcaagcaccactgtattattctgaaaaaatggataacagatcaaacaccgtcaatttcagcagcagtttgggggatttc |
107 |
Q |
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| T |
52824381 |
catgcgtaggatctgtgttcctcaagcaccactgtattattctgaaaaaatggataacagatcaaacaccgtcaatttcagcagcagtttgggggatttc |
52824480 |
T |
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| Q |
108 |
acagtttcacagataacaatccctcccaattaacattgtcacatcttatnnnnnnnnnnnnncaacaatgatatagacatatctttagatttcatacatt |
207 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
52824481 |
acagttccacagataacaatccctcccaattaacattgtcacatcttattatatatatatatcaacaatgatatagacatatctttagatttcatacatt |
52824580 |
T |
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| Q |
208 |
cattcaacatctgattttctctctagcactc |
238 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
52824581 |
cattcaacatctgattttctctctagcactc |
52824611 |
T |
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