View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5374-Insertion-9 (Length: 218)
Name: NF5374-Insertion-9
Description: NF5374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5374-Insertion-9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 22297591 - 22297801
Alignment:
| Q |
8 |
tagattacatgtaagagtgtaagtctccgccttgaataaacttgtagagcatatggaaaccttgagaattgaggaccctttaccatatagcatgcatagc |
107 |
Q |
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| T |
22297591 |
tagattacatgtgagagtgtaagtctccgccttaaataaatttgtagagcatatggaaaccttgagaattgaggaccctttaccatatagcatgcatagc |
22297690 |
T |
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| Q |
108 |
ctataaggtgattgaggagcaacatgatatatctggagggacgttaaatcatgttaatcaatcacttaaataaaacccttatatcataactgatagcttt |
207 |
Q |
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| T |
22297691 |
ctataaggtgattgaggagcaacatgatatatctggagggatgttaaatcatgtgaatcaatcacttaaataaaaccctttcatcataactgatagcttt |
22297790 |
T |
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| Q |
208 |
ttgcgtcaatc |
218 |
Q |
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|||||| |||| |
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| T |
22297791 |
ttgcgttaatc |
22297801 |
T |
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Back To:
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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 21546062 - 21545985
Alignment:
| Q |
52 |
tagagcatatggaaaccttgagaattgaggaccctttaccatatagcatgcatagcctataaggtgattgaggagcaa |
129 |
Q |
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| T |
21546062 |
tagagcatatggaaaccaagaggattgacgaccatttgccatatagcctacataacctttagggttattgaggagcaa |
21545985 |
T |
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