View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5374_low_2 (Length: 492)

Name: NF5374_low_2
Description: NF5374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5374_low_2
NF5374_low_2
[»] chr8 (8 HSPs)
chr8 (21-484)||(7546276-7546739)
chr8 (21-365)||(37714671-37715015)
chr8 (182-369)||(44097349-44097536)
chr8 (179-364)||(9740320-9740505)
chr8 (20-75)||(9740609-9740664)
chr8 (25-75)||(44097643-44097693)
chr8 (264-353)||(23636724-23636813)
chr8 (293-353)||(30702419-30702479)
[»] chr3 (2 HSPs)
chr3 (21-470)||(9166731-9167166)
chr3 (245-355)||(30187378-30187487)
[»] chr2 (6 HSPs)
chr2 (179-365)||(42052650-42052836)
chr2 (179-365)||(11973381-11973567)
chr2 (300-352)||(39606489-39606541)
chr2 (159-206)||(32626897-32626944)
chr2 (105-206)||(43450563-43450664)
chr2 (293-365)||(28920302-28920374)
[»] chr6 (4 HSPs)
chr6 (179-285)||(9421476-9421582)
chr6 (159-364)||(22757237-22757442)
chr6 (275-362)||(26585847-26585934)
chr6 (264-352)||(15160280-15160368)
[»] chr4 (5 HSPs)
chr4 (159-365)||(5475287-5475493)
chr4 (186-365)||(19145443-19145624)
chr4 (159-366)||(29001586-29001792)
chr4 (265-354)||(51073155-51073244)
chr4 (308-363)||(20188475-20188530)
[»] chr5 (7 HSPs)
chr5 (18-364)||(23924456-23924802)
chr5 (185-365)||(31293474-31293653)
chr5 (179-365)||(26527228-26527413)
chr5 (21-75)||(26527508-26527562)
chr5 (265-354)||(31629707-31629796)
chr5 (265-352)||(35413711-35413798)
chr5 (21-77)||(26755866-26755922)
[»] chr7 (4 HSPs)
chr7 (218-364)||(19314902-19315047)
chr7 (264-361)||(42266153-42266250)
chr7 (264-355)||(36781596-36781687)
chr7 (97-153)||(5846430-5846486)
[»] chr1 (2 HSPs)
chr1 (266-350)||(44439391-44439475)
chr1 (293-353)||(32590678-32590738)
[»] scaffold0309 (1 HSPs)
scaffold0309 (265-352)||(1748-1835)


Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 21 - 484
Target Start/End: Original strand, 7546276 - 7546739
Alignment:
Q  21 acatctttggcagcatgtggcatctcatttatcagtgggatgatatctctttcatttcccttgcattggtcgctgatcattgtcatcagtttggtcagtt 120  Q
    ||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||    
T  7546276 acatcttcggcagcatgtggcatctcatttatcagtgggttggtatctctttcatttcccctgcatcggtcgttgatcattgtcatcagtttggtcagtt 7546375  T
Q  121 agtgggcttaccgcgttttactcattcatatcttcatttgatttggcatacttctatctgggtcatttggaaggaacgaaacaacaggatctttcagaac 220  Q
    || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7546376 agcgggcttaccgctttttactcattcatatcttcatttgatttggcatacttctatctgggtcatttgcaaggaacgaaacaacaggatctttcagaac 7546475  T
Q  221 aaagttcaggattagacaaagtttttggattatgttaagttgttgtcttttttatggttaaaagcaaagctactaactgccgctttcagttacaatgacc 320  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  7546476 aaagttcaggattagacaaagttattggattatgttaagttgttatcttttttatggttaaaagcaaagctactaactgccgctttcagttacaatgatt 7546575  T
Q  321 ggtggcagcaccctcttttatgtatgggtgttaggaagtagtttttcttctgctttatcttttagctgtgccttatggtaacatactcttgacattgcat 420  Q
     |||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  7546576 tgtggcagcgctctcttttatgtatgggtgttaggaagtagtttttcttcagctttatcttctagctgtgccttatggtaacatactcttgacattgtat 7546675  T
Q  421 ttcttttatgtggatcttttcggcacaccttgttcgaattgatccactcttgattgagtattat 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7546676 ttcttttatgtggatcttttcggcacaccttgttcgaattgatccactcttgattgagtattat 7546739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 365
Target Start/End: Original strand, 37714671 - 37715015
Alignment:
Q  21 acatctttggcagcatgtggcatctcatttatcagtgggatgatatctctttcatttcccttgcattggtcgctgatcattgtcatcagtttggtcagtt 120  Q
    ||||||||||  || ||||||||||||| ||| |||||| || ||| |||||||| || |  |  |||||  ||||||| | ||| || ||||| || ||    
T  37714671 acatctttggtggcttgtggcatctcatatataagtgggttggtatttctttcatctcaccagacttggttactgatcactttcaccactttggccattt 37714770  T
Q  121 agtgggcttaccgcgttttactcattcatatcttcatttgatttggcatacttctatctgggtcatttggaaggaacgaaacaacaggatctttcagaac 220  Q
     | |||  ||||||| | |||||||   ||||||||  ||||||||||  || || | ||| ||||||||||||| || || |||||||| ||| | |||    
T  37714771 tgcgggtctaccgcggtatactcatatttatcttcaagtgatttggcactctactgtttggatcatttggaaggagcgtaataacaggatttttaaaaac 37714870  T
Q  221 aaagttcaggattagacaaagtttttggattatgttaagttgttgtcttttttatggttaaaagcaaagctactaactgccgctttcagttacaatgacc 320  Q
    ||||||||||||| ||  ||||| || |||||||| |||||  |||||||||  ||||||||||||||| | ||  || | || ||| |||||||| ||     
T  37714871 aaagttcaggatttgattaagttattagattatgtcaagtttatgtctttttcttggttaaaagcaaagttgctttcttctgccttctgttacaataact 37714970  T
Q  321 ggtggcagcaccctcttttatgtatgggtgttaggaagtagtttt 365  Q
    |||||| | ||||| | |||| ||||||| ||||| |||||||||    
T  37714971 ggtggcggaaccctttattatatatgggtattagggagtagtttt 37715015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 182 - 369
Target Start/End: Complemental strand, 44097536 - 44097349
Alignment:
Q  182 gtcatttggaaggaacgaaacaacaggatctttcagaacaaagttcaggattagacaaagtttttggattatgttaagttgttgtcttttttatggttaa 281  Q
    ||||||||||||||||||||||||| ||| |||   ||||||| ||| |||| ||  ||||| || || ||||| |||||  ||||||||| ||||||||    
T  44097536 gtcatttggaaggaacgaaacaacaagatttttacaaacaaagctcatgatttgatcaagttattcgactatgtcaagtttatgtctttttcatggttaa 44097437  T
Q  282 aagcaaagctactaactgccgctttcagttacaatgaccggtggcagcaccctcttttatgtatgggtgttaggaagtagtttttctt 369  Q
    |||| ||  | ||  || |  |||||||||||||||||||||||||| ||||| |  |||||||| || ||||| |||||||||||||    
T  44097436 aagctaaattgctctctactactttcagttacaatgaccggtggcagaaccctttagtatgtatgcgtattagggagtagtttttctt 44097349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 179 - 364
Target Start/End: Complemental strand, 9740505 - 9740320
Alignment:
Q  179 tgggtcatttggaaggaacgaaacaacaggatctttcagaacaaagttcaggattagacaaagtttttggattatgttaagttgttgtcttttttatggt 278  Q
    ||||||||||||||||| |||||||||| ||| ||| | ||||||| |||||||| ||  ||||| || |||||||| |||||  ||| |||||  ||||    
T  9740505 tgggtcatttggaaggagcgaaacaacaagatttttaaaaacaaagctcaggatttgattaagttattagattatgtcaagtttatgtatttttcttggt 9740406  T
Q  279 taaaagcaaagctactaactgccgctttcagttacaatgaccggtggcagcaccctcttttatgtatgggtgttaggaagtagttt 364  Q
    ||||||| ||||| ||  || | |||||||||||||||||| | |||  | ||||| | |||||||||||| ||||  ||||||||    
T  9740405 taaaagctaagctgctctctactgctttcagttacaatgactgatggtggaaccctttattatgtatgggtattagagagtagttt 9740320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 9740664 - 9740609
Alignment:
Q  20 aacatctttggcagcatgtggcatctcatttatcagtgggatgatatctctttcat 75  Q
    |||||||||||| || ||||||||||||||||| |||||| || |||| |||||||    
T  9740664 aacatctttggcggcttgtggcatctcatttataagtgggctggtatcactttcat 9740609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 44097693 - 44097643
Alignment:
Q  25 ctttggcagcatgtggcatctcatttatcagtgggatgatatctctttcat 75  Q
    |||||||||| |||||||||| |||||| |||||  |||||||||||||||    
T  44097693 ctttggcagcttgtggcatcttatttataagtggattgatatctctttcat 44097643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 353
Target Start/End: Complemental strand, 23636813 - 23636724
Alignment:
Q  264 tgtcttttttatggttaaaagcaaagctactaactgccgctttcagttacaatgaccggtggcagcaccctcttttatgtatgggtgtta 353  Q
    |||||||||||||| ||||||  ||  | || ||| ||||||||||||| || ||| |||||  ||||||| | ||||||||||||||||    
T  23636813 tgtcttttttatggctaaaagttaatatgctcacttccgctttcagttataacgactggtggatgcaccctttattatgtatgggtgtta 23636724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 30702479 - 30702419
Alignment:
Q  293 ctaactgccgctttcagttacaatgaccggtggcagcaccctcttttatgtatgggtgtta 353  Q
    |||||| ||||||||||||| |||||| |||||| ||||||| |  | |||||||||||||    
T  30702479 ctaacttccgctttcagttataatgactggtggcggcaccctttaatttgtatgggtgtta 30702419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 21 - 470
Target Start/End: Original strand, 9166731 - 9167166
Alignment:
Q  21 acatctttggcagcatgtggcatctcatttatcagtgggatgatatctctttcatttcccttgcattggtcgctgatcattgtcatcagtttggtcagtt 120  Q
    |||||||||||||  | |||||||| |||||||||| || || ||| ||||||  ||||| ||||| | | | ||| ||||  |||||||||||||||||    
T  9166731 acatctttggcagtttatggcatctaatttatcagttggttggtatatctttcccttcccctgcatcgattgttgaacatttgcatcagtttggtcagtt 9166830  T
Q  121 agtgggcttaccgcgttttactcattcatatcttcatttgatttggcatacttctatctgggtcatttggaaggaacgaaacaacaggatcttt-cagaa 219  Q
     | |||  |||||||   | |||||||||||||  |  ||||||||||||||||  ||||||||||||||||||||||||||||  |||| ||| ||| |    
T  9166831 ggcgggtataccgcgacatgctcattcatatctctaactgatttggcatacttcagtctgggtcatttggaaggaacgaaacaa--ggattttttcagga 9166928  T
Q  220 caaagttcaggattagacaaagtttttggattatgttaagttgttgtcttttttatggttaaaagcaaagctactaactgccgctttcagttacaatgac 319  Q
     ||||  ||||||| ||||||||| || ||||||||||||||||| |||||||||||| |||| ||||| || || ||| |  ||||||||||| |||||    
T  9166929 aaaagcacaggatttgacaaagttattagattatgttaagttgttatcttttttatggctaaaggcaaaactgcttacttctactttcagttactatgac 9167028  T
Q  320 cggtggcagcaccctcttttatgtatgggtgttaggaagtagtttttcttctgctttatcttttagctgtgccttatggtaacatactcttgacattgca 419  Q
     |||||| ||||||| | |||||||||||||||| | ||||||||||             | || |  |||||||||| |||||||||||| |||||| |    
T  9167029 tggtggcggcaccctttattatgtatgggtgttaaggagtagttttt-------------tcttcgtcgtgccttatgataacatactcttaacattgta 9167115  T
Q  420 tttcttttatgtggatcttttcggcacaccttgttcgaattgatccactct 470  Q
    ||  |||| ||||| |||||||||||  |||||| ||| ||||||||||||    
T  9167116 ttcattttttgtggttcttttcggcattccttgtgcgagttgatccactct 9167166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 355
Target Start/End: Complemental strand, 30187487 - 30187378
Alignment:
Q  245 ttggattatgttaagttgttgtcttttttatggttaaaagcaaagctactaactgccgctttcagttacaatgaccggtggcagcaccctcttttatgta 344  Q
    |||||| |||||||||| ||||||||||| ||||| ||||| ||  | || |||||||| || ||||||| |||| |||||| ||||||| | |||||||    
T  30187487 ttggataatgttaagtttttgtctttttt-tggttgaaagctaaaatgctcactgccgcctttagttacactgactggtggcggcaccctttgttatgta 30187389  T
Q  345 tgggtgttagg 355  Q
    |||||||||||    
T  30187388 tgggtgttagg 30187378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 179 - 365
Target Start/End: Original strand, 42052650 - 42052836
Alignment:
Q  179 tgggtcatttggaaggaacgaaacaacaggatctttcagaacaaagttcaggattagacaaagtttttggattatgttaagttgttgtcttttttatggt 278  Q
    ||||||||||||||||| |||||||||| ||| ||| ||||||||| ||| |||| ||  ||||| || |||||||| |||||  |||||||||| ||||    
T  42052650 tgggtcatttggaaggagcgaaacaacatgatttttaagaacaaagctcatgatttgattaagttattagattatgtcaagtttatgtcttttttttggt 42052749  T
Q  279 taaaagcaaagctactaactgccgctttcagttacaatgaccggtggcagcaccctcttttatgtatgggtgttaggaagtagtttt 365  Q
    ||||||| ||||| ||  || | || ||||||||||||||| |||||| | ||||| | |||||||||| | ||||| |||||||||    
T  42052750 taaaagctaagctgctttctactgccttcagttacaatgactggtggcggaaccctttattatgtatggatattagggagtagtttt 42052836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 179 - 365
Target Start/End: Original strand, 11973381 - 11973567
Alignment:
Q  179 tgggtcatttggaaggaacgaaacaacaggatctttcagaacaaagttcaggattagacaaagtttttggattatgttaagttgttgtcttttttatggt 278  Q
    ||||||||||||||||| || || ||||  |  ||| ||||||||| |||| ||| ||  ||||| || |||||||| |||||  |||||||||  ||||    
T  11973381 tgggtcatttggaaggagcgtaataacaaaaattttaagaacaaagctcagcatttgattaagttattagattatgtcaagtttatgtctttttcttggt 11973480  T
Q  279 taaaagcaaagctactaactgccgctttcagttacaatgaccggtggcagcaccctcttttatgtatgggtgttaggaagtagtttt 365  Q
    ||||||||||||| ||  || |  | ||||||||||||||| |||||| | ||||| | |||||||||||| ||||| |||||||||    
T  11973481 taaaagcaaagctgctttcttctaccttcagttacaatgactggtggcggaaccctttattatgtatgggtattagggagtagtttt 11973567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 352
Target Start/End: Original strand, 39606489 - 39606541
Alignment:
Q  300 ccgctttcagttacaatgaccggtggcagcaccctcttttatgtatgggtgtt 352  Q
    ||||||| ||||||| ||||||||||| | |||||||||||||||||||||||    
T  39606489 ccgcttttagttacactgaccggtggcgggaccctcttttatgtatgggtgtt 39606541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 32626897 - 32626944
Alignment:
Q  159 tgatttggcatacttctatctgggtcatttggaaggaacgaaacaaca 206  Q
    |||||||||||||| |||| ||| ||||||||||||||||||||||||    
T  32626897 tgatttggcatactactatttggatcatttggaaggaacgaaacaaca 32626944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 43450563 - 43450664
Alignment:
Q  105 atcagtttggtcagttagtgggcttaccgcgttttactcattcatatcttcatttgatttggcatacttctatctgggtcatttggaaggaacgaaacaa 204  Q
    ||||||||||  | |||||||| ||||||||||||||||| || | ||||||  |||| || ||| ||| | | ||| |||||||||||||| |||||||    
T  43450563 atcagtttggcaatttagtgggattaccgcgttttactcactcttttcttcaggtgatctgacatgcttgtgtttggctcatttggaaggaaagaaacaa 43450662  T
Q  205 ca 206  Q
    ||    
T  43450663 ca 43450664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 365
Target Start/End: Complemental strand, 28920374 - 28920302
Alignment:
Q  293 ctaactgccgctttcagttacaatgaccggtggcagcaccctcttttatgtatgggtgttaggaagtagtttt 365  Q
    |||||| ||||||||||||| |||||| |||||| ||||||| |  | ||||||||||||| | |||||||||    
T  28920374 ctaacttccgctttcagttataatgactggtggcggcaccctttactttgtatgggtgttatggagtagtttt 28920302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 9421476 - 9421582
Alignment:
Q  179 tgggtcatttggaaggaacgaaacaacaggatctttcagaacaaagttcaggattagacaaagtttttggattatgttaagttgttgtcttttttatggt 278  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||| |||||||| ||  ||||| || |||||||| |||||  | |||||||  ||||    
T  9421476 tgggtcatttggaaggaacgaaacaacaggatttttaagaacaaagctcaggatttgatcaagttattagattatgtcaagtttatatctttttcttggt 9421575  T
Q  279 taaaagc 285  Q
    |||||||    
T  9421576 taaaagc 9421582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 159 - 364
Target Start/End: Complemental strand, 22757442 - 22757237
Alignment:
Q  159 tgatttggcatacttctatctgggtcatttggaaggaacgaaacaacaggatctttcagaacaaagttcaggattagacaaagtttttggattatgttaa 258  Q
    |||||||||||||| || | ||||||||||||||||| | ||| |||||||| ||| | ||||||| |||||||| | | ||| | || ||| |||| ||    
T  22757442 tgatttggcatactactgtttgggtcatttggaaggaccaaaataacaggatatttaacaacaaagctcaggatttgtctaaggtgttagatgatgtcaa 22757343  T
Q  259 gttgttgtcttttttatggttaaaagcaaagctactaactgccgctttcagttacaatgaccggtggcagcaccctcttttatgtatgggtgttaggaag 358  Q
    ||| ||||| |||   ||||||||||| ||| |  | ||| || ||||| ||||||||||| |||||| |  |||| | | |||||||||||||||| ||    
T  22757342 gtttttgtcgtttacttggttaaaagctaagatgttcacttccactttcggttacaatgacgggtggcggagccctttatcatgtatgggtgttagggag 22757243  T
Q  359 tagttt 364  Q
    ||||||    
T  22757242 tagttt 22757237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 362
Target Start/End: Complemental strand, 26585934 - 26585847
Alignment:
Q  275 tggttaaaagcaaagctactaactgccgctttcagttacaatgaccggtggcagcaccctcttttatgtatgggtgttaggaagtagt 362  Q
    |||||| |||| ||||| || ||| |||||||| ||||||||||| |||||| |  |||| | |||||||||||| ||||| ||||||    
T  26585934 tggttacaagctaagctgctcacttccgctttcggttacaatgactggtggcggagccctttattatgtatgggtattagggagtagt 26585847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 15160368 - 15160280
Alignment:
Q  264 tgtcttttttatggttaaaagcaaagctactaactgccgctttcagttacaatgaccggtggcagcaccctcttttatgtatgggtgtt 352  Q
    |||||||||  ||||||||||| ||  | |||||| ||||||||||||| |||||| |||||| |||| || |  ||||||| ||||||    
T  15160368 tgtctttttcttggttaaaagctaacatgctaacttccgctttcagttataatgactggtggcggcactctttactatgtataggtgtt 15160280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 159 - 365
Target Start/End: Complemental strand, 5475493 - 5475287
Alignment:
Q  159 tgatttggcatacttctatctgggtcatttggaaggaacgaaacaacaggatctttcagaacaaagttcaggattagacaaagtttttggattatgttaa 258  Q
    ||||||| |||||| |||| ||||||||||| |||||| |||| |||||| | ||| ||| || || |||||||| | | ||||| || ||| |||| ||    
T  5475493 tgatttgacatactactatttgggtcatttgaaaggaaagaaataacaggttttttaagagcagagctcaggatttgtctaagttgttagatgatgtaaa 5475394  T
Q  259 gttgttgtcttttttatggttaaaagcaaagctactaactgccgctttcagttacaatgaccggtggcagcaccctcttttatgtatgggtgttaggaag 358  Q
    ||| ||||| |||   ||||||||||| ||| | || ||| |||||||| ||||||||| | |||||| | ||||| |  ||||| ||||||||||| ||    
T  5475393 gtttttgtcgtttacttggttaaaagctaagatgctcacttccgctttcggttacaatggcgggtggcggaaccctttagtatgtttgggtgttagggag 5475294  T
Q  359 tagtttt 365  Q
    |||||||    
T  5475293 tagtttt 5475287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 186 - 365
Target Start/End: Original strand, 19145443 - 19145624
Alignment:
Q  186 tttggaaggaacgaaacaacaggatctttcagaacaaagttcaggattagacaaagtttttggattatgttaagttgttgtcttttttatggttaaaagc 285  Q
    ||||||||||| ||||||||| ||| ||| |||||| || || | ||| |   ||||| || |||||||| |||||  |||| |||||||||||||||||    
T  19145443 tttggaaggaaagaaacaacatgatttttaagaacacagctccgaatttggttaagttattagattatgtcaagtttatgtcatttttatggttaaaagc 19145542  T
Q  286 aaagctactaactgccg--ctttcagttacaatgaccggtggcagcaccctcttttatgtatgggtgttaggaagtagtttt 365  Q
     ||||| || ||| | |  |||||||||| |||||| |||||| ||||||| | ||||||||||||||| || |||||||||    
T  19145543 taagctgctcacttctgtgctttcagttataatgactggtggcggcaccctttattatgtatgggtgttggggagtagtttt 19145624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 366
Target Start/End: Complemental strand, 29001792 - 29001586
Alignment:
Q  159 tgatttggcatacttctatctgggtcatttggaaggaacgaaacaacaggatctttcagaacaaagttcaggattagacaaagtttttggattatgttaa 258  Q
    ||||||||||  || |||| |||||||||||||||||| ||||||||| ||| ||| ||||||||| || ||||| ||  ||||| || ||||| || ||    
T  29001792 tgatttggcactctactatttgggtcatttggaaggaaggaaacaacaagatttttaagaacaaagctcgggatttgatcaagttattagattacgtcaa 29001693  T
Q  259 gttgttgtcttttttatggttaaaagcaaagctactaactgccgctttcagttacaatgaccggtggcagcaccctcttttatgtatgggtgttaggaag 358  Q
    |||  |||||||||  ||||||||||| ||| |  |  || | ||||||| |||||||||| |||||| | | |||   |||||||||||| ||||| ||    
T  29001692 gtttatgtctttttcttggttaaaagctaagttgatctctactgctttcaattacaatgactggtggc-ggaaccttaattatgtatgggtattagggag 29001594  T
Q  359 tagttttt 366  Q
    ||||||||    
T  29001593 tagttttt 29001586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 354
Target Start/End: Original strand, 51073155 - 51073244
Alignment:
Q  265 gtcttttttatggttaaaagcaaagctactaactgccgctttcagttacaatgaccggtggcagcaccctcttttatgtatgggtgttag 354  Q
    ||||||||||||||| ||||| ||    || ||| || |||||||||||| |||| |||||| | |||||||| ||||||||||||||||    
T  51073155 gtcttttttatggttgaaagctaacaagcttacttccactttcagttacactgactggtggcgggaccctcttctatgtatgggtgttag 51073244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 363
Target Start/End: Original strand, 20188475 - 20188530
Alignment:
Q  308 agttacaatgaccggtggcagcaccctcttttatgtatgggtgttaggaagtagtt 363  Q
    ||||||| ||||||||||| ||||||| | || ||||||||||||||||| |||||    
T  20188475 agttacactgaccggtggcggcaccctttattttgtatgggtgttaggaactagtt 20188530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 23924802 - 23924456
Alignment:
Q  18 gcaacatctttggcagcatgtggcatctcatttatcagtgggatgatatctctttcatttcccttgcattggtcgctgatcattgtcatcagtttggtca 117  Q
    ||||||||||||| ||| ||||| |||||||||||||||||| || ||||||||| ||||||| ||  ||||| |||  ||||| |||||| || |||||    
T  23924802 gcaacatctttggtagcttgtggtatctcatttatcagtgggttggtatctcttttatttcccctgtgttggttgcttctcattttcatcatttcggtca 23924703  T
Q  118 gttagtgggcttaccgcgttttactcattcatatcttcatttgatttggcatacttctatctgggtcatttggaaggaacgaaacaacaggatctttcag 217  Q
     |  |  || |||||  |  ||||| || | || ||| |  ||||||| ||| || || | |||||| ||||||||||  |||| |||| ||| ||| ||    
T  23924702 ctatgccggtttaccaaggattacttatgcctaccttaaggtgatttgacatgctactgtttgggtcctttggaaggagagaaataacaagatttttaag 23924603  T
Q  218 aacaaagttcaggattagacaaagtttttggattatgttaagttgttgtcttttttatggttaaaagcaaagctactaactgccgctttcagttacaatg 317  Q
    |||| |  ||| |||| | |  |||| || ||  ||||||| ||  |||| ||||||||||||||||| ||| |||| ||| | | ||||||||| ||||    
T  23924602 aacataactcaagatttggcctagttattagagcatgttaaatttatgtcatttttatggttaaaagctaagttactcacttctgttttcagttataatg 23924503  T
Q  318 accggtggcagcaccctcttttatgtatgggtgttaggaagtagttt 364  Q
    || |||||  | ||||| | |||||||||||| ||||| ||||||||    
T  23924502 actggtggaggaaccctttattatgtatgggtcttagggagtagttt 23924456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 365
Target Start/End: Complemental strand, 31293653 - 31293474
Alignment:
Q  185 atttggaaggaacgaaacaacaggatctttcagaacaaagttcaggattagacaaagtttttggattatgttaagttgttgtcttttttatggttaaaag 284  Q
    |||||||||||| |||||||||  || ||| | || |||| |||||||| |   ||||| || || || |||||||| |||||||||| ||||||||||     
T  31293653 atttggaaggaaagaaacaacataat-tttaaaaataaagctcaggatttggtcaagttattagactacgttaagtttttgtctttttcatggttaaaaa 31293555  T
Q  285 caaagctactaactgccgctttcagttacaatgaccggtggcagcaccctcttttatgtatgggtgttaggaagtagtttt 365  Q
    | ||||| | |||| | | ||||||||| |||||| | |||| ||||||| | ||||||||||||||||||  ||||||||    
T  31293554 ctaagctgcaaacttctgttttcagttataatgactgatggcggcaccctttattatgtatgggtgttagggggtagtttt 31293474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 365
Target Start/End: Complemental strand, 26527413 - 26527228
Alignment:
Q  179 tgggtcatttggaaggaacgaaacaacaggatctttcagaacaaagttcaggattagacaaagtttttggattatgttaagttgttgtcttttttatggt 278  Q
    |||||||||||||| || |||||||||| ||| ||| ||||||||| |||||||  ||  ||||| || |||||||| ||||| || |||||||  ||||    
T  26527413 tgggtcatttggaatgagcgaaacaacaagatttttaagaacaaagctcaggatatgattaagttattagattatgtaaagtt-ttttctttttcttggt 26527315  T
Q  279 taaaagcaaagctactaactgccgctttcagttacaatgaccggtggcagcaccctcttttatgtatgggtgttaggaagtagtttt 365  Q
    ||||||| ||||  ||  |  | |||||||||||||| ||| |||||  | ||| | | ||||||||| || ||||| |||||||||    
T  26527314 taaaagctaagcagctttccactgctttcagttacaacgactggtggtggaaccttttattatgtatgtgtattagggagtagtttt 26527228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 26527562 - 26527508
Alignment:
Q  21 acatctttggcagcatgtggcatctcatttatcagtgggatgatatctctttcat 75  Q
    ||||||||||| || ||||||||||||||||| |||||| || ||||||||||||    
T  26527562 acatctttggcggcttgtggcatctcatttataagtgggttggtatctctttcat 26527508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 31629796 - 31629707
Alignment:
Q  265 gtcttttttatggttaaaagcaaagctactaactgccgctttcagttacaatgaccggtggcagcaccctcttttatgtatgggtgttag 354  Q
    ||||||||||||||| ||||| ||    || ||| ||||||||||||||| |||| | |||| | |||||||| ||||||||||||||||    
T  31629796 gtcttttttatggttgaaagctaacaagcttacttccgctttcagttacactgactgatggcgggaccctcttctatgtatgggtgttag 31629707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 352
Target Start/End: Complemental strand, 35413798 - 35413711
Alignment:
Q  265 gtcttttttatggttaaaagcaaagctactaactgccgctttcagttacaatgaccggtggcagcaccctcttttatgtatgggtgtt 352  Q
    ||||||||||||||| ||||| ||    || ||| ||||||||||||||| |||| |||||| | |||||||| ||| ||||||||||    
T  35413798 gtcttttttatggttgaaagcgaacaagcttacttccgctttcagttacactgactggtggcgggaccctcttctatatatgggtgtt 35413711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 26755866 - 26755922
Alignment:
Q  21 acatctttggcagcatgtggcatctcatttatcagtgggatgatatctctttcattt 77  Q
    ||||||||||  || ||||||||||| ||||| |||||| || ||||||||||||||    
T  26755866 acatctttggtggcctgtggcatctcgtttataagtgggttggtatctctttcattt 26755922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 218 - 364
Target Start/End: Complemental strand, 19315047 - 19314902
Alignment:
Q  218 aacaaagttcaggattagacaaagtttttggattatgttaagttgttgtcttttttatggttaaaagcaaagctactaactgccgctttcagttacaatg 317  Q
    ||||||| |||||||| | | ||||| || ||| |||| ||||| ||||| |||   ||||||||||| ||||| || ||| |||||||| |||||||||    
T  19315047 aacaaagctcaggatttgtctaagttgttagatgatgtcaagtt-ttgtcgtttacttggttaaaagctaagctgctcacttccgctttcggttacaatg 19314949  T
Q  318 accggtggcagcaccctcttttatgtatgggtgttaggaagtagttt 364  Q
    ||||||||| |  |||| | |||| ||||||||||||| ||||||||    
T  19314948 accggtggcggagccctttattatatatgggtgttagggagtagttt 19314902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 264 - 361
Target Start/End: Complemental strand, 42266250 - 42266153
Alignment:
Q  264 tgtcttttttatggttaaaagcaaagctactaactgccgctttcagttacaatgaccggtggcagcaccctcttttatgtatgggtgttaggaagtag 361  Q
    |||||||||||||||||||||| ||  | |  ||| ||||||||||||| || |||||||||| ||||||| |  | ||||||||||||||| |||||    
T  42266250 tgtcttttttatggttaaaagctaatatgcccacttccgctttcagttataacgaccggtggcggcaccctttactttgtatgggtgttagggagtag 42266153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 264 - 355
Target Start/End: Original strand, 36781596 - 36781687
Alignment:
Q  264 tgtcttttttatggttaaaagcaaagctactaactgccgctttcagttacaatgaccggtggcagcaccctcttttatgtatgggtgttagg 355  Q
    |||| ||||||||||||||| | |||||||| |||   ||||||||||| || |||||||||| | ||||  | ||||||||||||||||||    
T  36781596 tgtcatttttatggttaaaatctaagctactcacttgtgctttcagttataacgaccggtggcggaaccccttattatgtatgggtgttagg 36781687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 5846486 - 5846430
Alignment:
Q  97 tcattgtcatcagtttggtcagttagtgggcttaccgcgttttactcattcatatct 153  Q
    ||||| ||||||||||||||| |||||||| |||||||| |  |||||||| |||||    
T  5846486 tcattttcatcagtttggtcatttagtggggttaccgcgatcaactcattcttatct 5846430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 350
Target Start/End: Complemental strand, 44439475 - 44439391
Alignment:
Q  266 tcttttttatggttaaaagcaaagctactaactgccgctttcagttacaatgaccggtggcagcaccctcttttatgtatgggtg 350  Q
    |||||||||||||| ||||| ||    || ||| ||||||||||||||| ||||||||||| | |||||||| ||||||||||||    
T  44439475 tcttttttatggttgaaagctaacaagcttacttccgctttcagttacactgaccggtggcgggaccctcttctatgtatgggtg 44439391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 32590738 - 32590678
Alignment:
Q  293 ctaactgccgctttcagttacaatgaccggtggcagcaccctcttttatgtatgggtgtta 353  Q
    |||||| ||||||||||||| ||||||||||||  ||||||| |  | |||||||||||||    
T  32590738 ctaacttccgctttcagttataatgaccggtggtggcaccctttaatttgtatgggtgtta 32590678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 352
Target Start/End: Original strand, 1748 - 1835
Alignment:
Q  265 gtcttttttatggttaaaagcaaagctactaactgccgctttcagttacaatgaccggtggcagcaccctcttttatgtatgggtgtt 352  Q
    ||||||||||||||| ||||| ||    || ||| ||||||||| ||||| |||| |||||| | |||||||| ||||||||||||||    
T  1748 gtcttttttatggttgaaagcgaacaagcttacttccgctttcaattacactgactggtggcgggaccctcttctatgtatgggtgtt 1835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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