View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5374_low_3 (Length: 461)
Name: NF5374_low_3
Description: NF5374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5374_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 14 - 448
Target Start/End: Original strand, 55450730 - 55451161
Alignment:
| Q |
14 |
ttctggacataccattggaaatcctaaggtatttaaaaatgtgcactgggaggagcaatatcaacacttgcagatgcttttaaggaaattggaccaatca |
113 |
Q |
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| T |
55450730 |
ttctggacataccattggaaatcctaaggtatttaaaaatgtgcactgggaggagcaatatcaacacttgcagatgcttttaaggaaattggaccaatca |
55450829 |
T |
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| Q |
114 |
gaccaagcagaatacatccaaagtatgtctaggaacaacacaataattctcaaatgctttctttcttacgaagttcttgttattttatttggttaatttc |
213 |
Q |
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| T |
55450830 |
gaccaagcagaatacatccaaagtatgtctaggaacaacacaataattctcaaatgctttctttcttacgaagttcttgttattttatttggttaatttc |
55450929 |
T |
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| Q |
214 |
atcctttggcagtgcttcaatctttgtcttcggttgaacttagcagacatgctgttgagttagagaagagatcaattcagctttcacttgaggaaggtaa |
313 |
Q |
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| T |
55450930 |
atcctttggcagtgcttcaatctttgtcttcggttgaacttagcagacatgctgttgagttagagaagagatcaattcagctttcacttgaggaaggtaa |
55451029 |
T |
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| Q |
314 |
tagaattgttgtttcacttgtttcctttgcaatcactgacttagagatgacgctcactcattaggatggagagtgcggagttaggcattaactcaaatct |
413 |
Q |
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| T |
55451030 |
tagaattgttgtttcacttgtttcctttgcaatcactgacttagagatgacgctcactcattaggatggagagtgcggagttaggcattaactcaaatct |
55451129 |
T |
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| Q |
414 |
tatgattatgcaccactatcaatcatgcttgtggt |
448 |
Q |
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| T |
55451130 |
tatgattatg---cactatcaatcatgcttgtggt |
55451161 |
T |
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