View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5374_low_4 (Length: 452)

Name: NF5374_low_4
Description: NF5374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5374_low_4
NF5374_low_4
[»] chr4 (9 HSPs)
chr4 (11-437)||(22297170-22297596)
chr4 (118-224)||(11093837-11093942)
chr4 (33-167)||(52998822-52998955)
chr4 (33-80)||(48747717-48747764)
chr4 (49-99)||(23975193-23975243)
chr4 (39-73)||(28572486-28572520)
chr4 (49-98)||(4214576-4214625)
chr4 (33-110)||(12216138-12216215)
chr4 (42-126)||(30242463-30242545)
[»] chr2 (3 HSPs)
chr2 (51-246)||(13517050-13517242)
chr2 (44-192)||(7707193-7707341)
chr2 (42-207)||(4450891-4451056)
[»] chr1 (4 HSPs)
chr1 (42-220)||(8746838-8747015)
chr1 (24-128)||(25425669-25425771)
chr1 (42-225)||(36977098-36977280)
chr1 (142-246)||(25784544-25784648)
[»] chr5 (2 HSPs)
chr5 (33-125)||(19964284-19964376)
chr5 (354-433)||(27248024-27248103)
[»] chr7 (1 HSPs)
chr7 (33-100)||(12864564-12864631)
[»] scaffold0330 (1 HSPs)
scaffold0330 (91-252)||(1082-1243)
[»] chr6 (3 HSPs)
chr6 (45-99)||(10504550-10504604)
chr6 (395-436)||(11005070-11005111)
chr6 (45-129)||(26297397-26297481)
[»] chr3 (1 HSPs)
chr3 (44-129)||(10950548-10950633)


Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 11 - 437
Target Start/End: Original strand, 22297170 - 22297596
Alignment:
Q  11 caaaggagaagtctctcaccttaacctgtgctcttagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaacacccattgat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  22297170 caaaggagaagtctctcaccttaacctgtgctcttagagtatgtttaatttcttttgtaatttatatttagttgcaatgtgtaactaaacatccattgat 22297269  T
Q  111 tatggttctaagatgaaccacttttcaatttttggattttattaatacaagtattttcttcggttatattttaagatctatttaatctttgtatgcatca 210  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  22297270 tatggttctaagatgaaccactgttcaatttttggattttattaatacaagtattttcttcagttatattgtaagatctatttaatctttgtatgcatca 22297369  T
Q  211 ggcttaatgcttttacaactctagggagtttgacatgcctaggaagtgtgactcaacttaaaatgggcacaaattggtgtctggattacatgagaattgt 310  Q
    | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22297370 gacttaatgcttttacaactctagggagtttgacatgcctaggaagtgcgactcaacttaaaatgggcacaaattggtgtctggattacatgagaattgt 22297469  T
Q  311 tacacgtgaattttattccttccacttagtaagatatggtaatgcctattcttttaatctaccaaggacaagatagagtgtattgtgaaattttaagatt 410  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22297470 tacacgtgaattttactctttccacttagtaagatatggtaatgcctattcttttaatctaccaaggacaagttagagtgtattgtgaaattttaagatt 22297569  T
Q  411 cataggtaaaagtggttcgtttagatt 437  Q
    |||||||||||||||||||||||||||    
T  22297570 cataggtaaaagtggttcgtttagatt 22297596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 11093942 - 11093837
Alignment:
Q  118 ctaagatgaaccacttttcaatttttggattttattaatacaagtattttcttcggttatattttaagatctatttaatctttgtatgcatcaggcttaa 217  Q
    ||||||||||||  |||| |||| || |||| ||||||| |||||  ||| |||  |||| ||||||||||||||||||||||||||||||||||| |||    
T  11093942 ctaagatgaacctatttt-aattgtttgattctattaatgcaagtcatttattcaattatgttttaagatctatttaatctttgtatgcatcaggcgtaa 11093844  T
Q  218 tgctttt 224  Q
    || ||||    
T  11093843 tgttttt 11093837  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 33 - 167
Target Start/End: Original strand, 52998822 - 52998955
Alignment:
Q  33 aacctgtgctcttagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaacacccattgattatggttctaagatgaaccact 132  Q
    ||||| || ||||||||||||||| |||||||||||| | | |||||  || ||||| || ||||||||||  ||||||| | ||||| |||||| | ||    
T  52998822 aacctttgttcttagagtatgttttatttcttttgtattatgtattttgttacaatgagtgactaaacaccttttgattaggtttctatgatgaatctct 52998921  T
Q  133 tttcaatttttggattttattaatacaagtatttt 167  Q
     || | || ||||||||||||||||||||| ||||    
T  52998922 att-atttattggattttattaatacaagtctttt 52998955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 48747764 - 48747717
Alignment:
Q  33 aacctgtgctcttagagtatgtttaatttcttttgtaatttatattta 80  Q
    ||||| || ||||||||||||||| |||||||||||||||||| ||||    
T  48747764 aacctttgttcttagagtatgttttatttcttttgtaatttattttta 48747717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 23975243 - 23975193
Alignment:
Q  49 gtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaa 99  Q
    |||||||| |||||||||||||||| | |||| |||| |||||||||||||    
T  23975243 gtatgttttatttcttttgtaatttgtctttagttgccatgtgtaactaaa 23975193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 28572520 - 28572486
Alignment:
Q  39 tgctcttagagtatgtttaatttcttttgtaattt 73  Q
    |||||||||||||||||| ||||||||||||||||    
T  28572520 tgctcttagagtatgttttatttcttttgtaattt 28572486  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 4214576 - 4214625
Alignment:
Q  49 gtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaa 98  Q
    |||||||| ||||||||||||||||||||||| || | ||| ||||||||    
T  4214576 gtatgttttatttcttttgtaatttatatttagttcccatgagtaactaa 4214625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 12216138 - 12216215
Alignment:
Q  33 aacctgtgctcttagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaacacccattgat 110  Q
    ||||| || ||||||||||||||| |||||||||||||||  | |||| || | ||| ||||||||| ||| ||||||    
T  12216138 aacctttgttcttagagtatgttttatttcttttgtaattcgtctttagttaccatgagtaactaaatacctattgat 12216215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 30242545 - 30242463
Alignment:
Q  42 tcttagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaacacccattgattatggttctaagatga 126  Q
    ||||||||||||||  |||||||||||||||||| ||||  | | ||| |||||||||| |  |||||||| |||||||| ||||    
T  30242545 tcttagagtatgtt--atttcttttgtaatttatttttaggtactatgagtaactaaaccctaattgattagggttctaatatga 30242463  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 51 - 246
Target Start/End: Original strand, 13517050 - 13517242
Alignment:
Q  51 atgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaacacccattgattatggttctaagatgaaccacttttcaatttttggatttt 150  Q
    |||||| ||||||||| |||||||| |||| || | ||| ||||||||||||| |||||||| |||||| ||||||| | || ||   || ||||||||     
T  13517050 atgttttatttcttttttaatttatctttagttaccatgagtaactaaacacctattgattaaggttctgagatgaatctctatttgtttgttggatttc 13517149  T
Q  151 attaatacaagtattttcttcggttatattttaagatctatttaatctttgtatgcatcaggcttaatgcttttacaactctagggagtttgacat 246  Q
    ||| |||||||| |||| ||| ||||||||||||||||||||   | |||||||||||| |||||| |||||| |||||  |||||||||||||||    
T  13517150 attcatacaagtcttttattcagttatattttaagatctatt---tttttgtatgcatcgggcttagtgctttaacaaccttagggagtttgacat 13517242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 192
Target Start/End: Complemental strand, 7707341 - 7707193
Alignment:
Q  44 ttagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaacacccattgattatggttctaagatgaaccacttttcaattttt 143  Q
    ||||||||| ||| |||||||||||| | ||| |||  || | ||| |||||||||||||| ||||||| ||||||||||| ||||  | || | || ||    
T  7707341 ttagagtatattttatttcttttgtattatatcttttgttaccatgagtaactaaacaccctttgattagggttctaagatcaacctttatttatttgtt 7707242  T
Q  144 ggattttattaatacaagtattttcttcggttatattttaagatctatt 192  Q
    ||||| | || || ||||| |||||||| |||||  ||| |||||||||    
T  7707241 ggattatgttcatgcaagtcttttcttcagttatgatttgagatctatt 7707193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 207
Target Start/End: Complemental strand, 4451056 - 4450891
Alignment:
Q  42 tcttagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaacacccattgattatggttctaagatgaaccacttttcaattt 141  Q
    ||||||||||||||| ||||||||| |||||| | |||||||   ||| |||||||||| |   || ||||  ||| ||||||||||   | ||   ||     
T  4451056 tcttagagtatgttttatttcttttataatttgtttttaattatcatgagtaactaaactctggttaattaaagttttaagatgaacatttatttgcttg 4450957  T
Q  142 ttggattttattaatacaagtattttcttcggttatattttaagatctatttaatctttgtatgca 207  Q
    ||||||   |||||| |||||||||| ||| ||||| |||| ||||||||||||| ||| ||||||    
T  4450956 ttggatcaaattaattcaagtattttattcagttatgttttgagatctatttaatttttatatgca 4450891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 42 - 220
Target Start/End: Original strand, 8746838 - 8747015
Alignment:
Q  42 tcttagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaacacccattgattatggttctaagatgaaccacttttcaattt 141  Q
    ||||||||||||||| |||||||||||||||||| ||| ||| | ||| |||| |||||||   ||||||| ||||||||||| |||| || || | ||     
T  8746838 tcttagagtatgttttatttcttttgtaatttatctttgattaccatgagtaattaaacactt-ttgattagggttctaagataaacctctatttattta 8746936  T
Q  142 ttggattttattaatacaagtattttcttcggttatattttaagatctatttaatctttgtatgcatcaggcttaatgc 220  Q
    || ||||||||||||| || |||||| ||| |||||  ||||||||  ||||||| |||||||||||||  ||||||||    
T  8746937 ttagattttattaataaaattattttattcagttattatttaagatgcatttaatttttgtatgcatcaatcttaatgc 8747015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 25425771 - 25425669
Alignment:
Q  24 tctcaccttaacctgtgctcttagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaacacccattgattatggttctaaga 123  Q
    |||| ||||||||| || ||||||||| |||||| ||||||||||||||| | |||  || ||||| ||||||||||||| |||||||| ||||||||||    
T  25425771 tctctccttaacctttgttcttagagtttgttta-tttcttttgtaatttgtctttggttacaatgagtaactaaacacctattgatta-ggttctaaga 25425674  T
Q  124 tgaac 128  Q
    |||||    
T  25425673 tgaac 25425669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 225
Target Start/End: Complemental strand, 36977280 - 36977098
Alignment:
Q  42 tcttagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaacacccattgattatggttctaagatgaaccacttttcaattt 141  Q
    ||||||||||  ||| |||||||| ||||||| | |||| || | ||| ||||||||||||| |||||||| ||||||| |||||||| || ||  |||     
T  36977280 tcttagagtacattttatttcttt-gtaatttgtctttagttaccatgcgtaactaaacacctattgattagggttctatgatgaacctctattttattg 36977182  T
Q  142 ttggattttattaatacaagtattttcttcggttatattttaagatctatttaatctttgtatgcatcaggcttaatgctttta 225  Q
    | || |   |||||| ||||| |||| |||  ||||  ||| ||||||||||||| ||| ||||||  ||||||||||||||||    
T  36977181 tcgggtcaaattaattcaagtcttttattcaattatggtttgagatctatttaatttttatatgcaaaaggcttaatgctttta 36977098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 246
Target Start/End: Complemental strand, 25784648 - 25784544
Alignment:
Q  142 ttggattttattaatacaagtattttcttcggttatattttaagatctatttaatctttgtatgcatcaggcttaatgcttttacaactctagggagttt 241  Q
    |||||||| |||||| ||||| |||| |||   ||| | ||||||||||| |||| ||||| ||||||   ||||||||||| ||||| ||| ||||| |    
T  25784648 ttggatttcattaattcaagtcttttattcaaatatgtcttaagatctatgtaatttttgtgtgcatcgaacttaatgctttcacaaccctaaggagtgt 25784549  T
Q  242 gacat 246  Q
    |||||    
T  25784548 gacat 25784544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 33 - 125
Target Start/End: Complemental strand, 19964376 - 19964284
Alignment:
Q  33 aacctgtgctcttagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaacacccattgattatggttctaagatg 125  Q
    ||||| || ||||||||||| ||| |||||||||| ||||||| ||||||| | ||| ||||||||||||| |||||||| ||||||||||||    
T  19964376 aacctttgttcttagagtatattttatttcttttgaaatttatctttaattacgatgagtaactaaacacctattgattaaggttctaagatg 19964284  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 433
Target Start/End: Original strand, 27248024 - 27248103
Alignment:
Q  354 gcctattcttttaatctaccaaggacaagatagagtgtattgtgaaattttaagattcataggtaaaagtggttcgttta 433  Q
    |||||| | |||||||| | ||||||||| ||| || | | ||||||||||||||||| |||||||||||||||| ||||    
T  27248024 gcctatccatttaatcttctaaggacaagttagggtatgtggtgaaattttaagattcttaggtaaaagtggttccttta 27248103  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 12864631 - 12864564
Alignment:
Q  33 aacctgtgctcttagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaac 100  Q
    ||||| || |||||||||||||||  |||||||||||||||||||||| |||| ||| ||||||||||    
T  12864631 aacctttgttcttagagtatgttttgtttcttttgtaatttatatttagttgccatgagtaactaaac 12864564  T

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Target: scaffold0330 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 91 - 252
Target Start/End: Original strand, 1082 - 1243
Alignment:
Q  91 gtaactaaacacccattgattatggttctaagatgaaccacttttcaatttttggattttattaatacaagtattttcttcggttatattttaagatcta 190  Q
    ||||||||||||| ||| |||||||||||||||| |||  || ||   || |||||||| ||| || |||||||||  ||| | ||| |||| |||||||    
T  1082 gtaactaaacacctattcattatggttctaagataaacatctatttgtttgttggatttaatt-attcaagtatttcattcagatatgttttgagatcta 1180  T
Q  191 tttaatctttgtatgcatcaggcttaatgcttttacaact-ctagggagtttgacatgcctag 252  Q
    |||||| ||||||||||  ||| | |||||||| |||| | ||||||||| |||||| |||||    
T  1181 tttaatttttgtatgcaaaaggttcaatgctttcacaaatcctagggagtgtgacatacctag 1243  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 10504604 - 10504550
Alignment:
Q  45 tagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaa 99  Q
    |||||||||||| |||||||||||||||||| |||| |||| |||||||||||||    
T  10504604 tagagtatgttttatttcttttgtaatttatctttagttgccatgtgtaactaaa 10504550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 436
Target Start/End: Original strand, 11005070 - 11005111
Alignment:
Q  395 gtgaaattttaagattcataggtaaaagtggttcgtttagat 436  Q
    |||||||| ||||||||||||||||||||||||| |||||||    
T  11005070 gtgaaattctaagattcataggtaaaagtggttcctttagat 11005111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 26297481 - 26297397
Alignment:
Q  45 tagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaacacccattgattatggttctaagatgaacc 129  Q
    |||||||||||| |||||||||||||||||| |||  || | ||| |||||| ||| |  ||| | || ||||||||||||||||    
T  26297481 tagagtatgttttatttcttttgtaatttatctttggttaccatgagtaactcaaccctaattaaatagggttctaagatgaacc 26297397  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 10950633 - 10950548
Alignment:
Q  44 ttagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaacacccattgattatggttctaagatgaacc 129  Q
    ||||||||||||| ||||||||| |||||| | |||| ||   ||  ||||||||||||| ||| |||| ||||||||||||||||    
T  10950633 ttagagtatgttttatttcttttataatttgtctttagttaacataagtaactaaacacctattaattaaggttctaagatgaacc 10950548  T

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