View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5374_low_5 (Length: 443)
Name: NF5374_low_5
Description: NF5374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5374_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 139 - 432
Target Start/End: Complemental strand, 28168411 - 28168117
Alignment:
| Q |
139 |
gatggttagtagctttgattgtgctagagataattattcatgcttgtctaatggaatccaataaatttt-gacaattttcatcttacggtttttattaga |
237 |
Q |
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| T |
28168411 |
gatggttagtagctttgattgtgctagagataattattcatgcttgtctaatggaatccaataaatttttgacaattttcatcttacggtttttattaga |
28168312 |
T |
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| Q |
238 |
cttagtagctattagttgacaagcttcacatatgttattattattaacatcattaaacacaccttgcaattcttcatgcaggttttccatgtaacaatga |
337 |
Q |
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| T |
28168311 |
gttagtagctattagttgacaagcttcacatatgttattattattaacatcattaaacacactttacaattcttcatgcaggttttccatgtaacaatga |
28168212 |
T |
|
| Q |
338 |
ggtagcatcctaagctaaattcacttatttgcaacttgttgcatcattaacaaataccattcgtattattggacctctcattattttcgagtatt |
432 |
Q |
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| T |
28168211 |
ggtagcatcctaagctaaattcacttatttgcaacttgttgcatcattaacaaataccattcgtattattggacctctcattattttcgagtatt |
28168117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 53 - 410
Target Start/End: Complemental strand, 28172141 - 28171787
Alignment:
| Q |
53 |
tgtaggtatgtacaaaaaggaagaaagtcttcagcatcttttcatttattgtgttttctttgaaaatgtatggggtggtattttacgatggttagtagct |
152 |
Q |
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| T |
28172141 |
tgtaggtaggta-aaaaaggaagaaagttttcaacatattttcattgattgtgttttattgggaaatgtgtggggtggtattttacggtggttagtagct |
28172043 |
T |
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| Q |
153 |
ttgattgtgctagagataattattcatgcttgtctaatggaatccaataaattttgacaattttcatcttacggtttttattagacttagtagctattag |
252 |
Q |
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| T |
28172042 |
tcgattgtggtagagataattattcatgcttgtctaatggagtccaataaagtttgacaattttcttctcacggttttcattagagttagtagctattag |
28171943 |
T |
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| Q |
253 |
ttgacaagcttcacatatgttattattattaacatcattaaacacaccttgcaattcttcatgcaggttttccatgtaacaatgaggtagcatcctaagc |
352 |
Q |
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| T |
28171942 |
ttgacaaccttcacatagg---ctattatcaacatcattaaacacaccttgcaattcttcatgcaggtattccatgtaacaatgaggtagcatcctaaac |
28171846 |
T |
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| Q |
353 |
taaattcacttatttgc-aacttgttgcatcattaacaaataccattcgtattattgga |
410 |
Q |
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| T |
28171845 |
taaattcacctatttgcaaacttgttgcatcattaacaaataccattcgtattattgga |
28171787 |
T |
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