View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5374_low_6 (Length: 416)
Name: NF5374_low_6
Description: NF5374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5374_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 405
Target Start/End: Complemental strand, 39903501 - 39903114
Alignment:
| Q |
18 |
gttactgttaaaagaggtgtcatatcttggatttgttgttttatgtatgtttcgggcattttgtaaggtaagagtccgacacaaaggtgaggagcatgct |
117 |
Q |
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| T |
39903501 |
gttactgttaaaagaggtgtcatatcttagatttgttgttttatgtatgttttgggcattttgtaaggtaagagtccgacacaaaggtgaggagcatgct |
39903402 |
T |
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| Q |
118 |
cttatgattgtccaaaatttgagcactatgttccctcaattttcctattttacctaatgacccatccctcttctcattccaccttatgttatccagctac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39903401 |
cttatgattgtccaaaatttgagcactatgttccctcaattttcctattttacctaatgacccatccctcttctcattccaccttatgttatctagctac |
39903302 |
T |
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| Q |
218 |
tgtatctattactatcatccatgttcgtagtattttcatttttctgtgaaatgacatttcatgcatattgttcatcttatcactatgtacacgggctcat |
317 |
Q |
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| T |
39903301 |
tgtatctattactatcatccatgttcgtagtattttcatttttctgtgaaatgacatttcatgcatattgttcatcttatcactatgtacacgggctcat |
39903202 |
T |
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| Q |
318 |
caacttgaacatgcatccttttttgtacttcctttcaaaattatttattatcacttttcgtttccctccctcaacatgtcattattca |
405 |
Q |
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| T |
39903201 |
caacttgaacatgcatccttttttgtacttcctttcaaaattatttattatcacttttcgtttccctccctcaacatgtcattattca |
39903114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 5911126 - 5911078
Alignment:
| Q |
215 |
tactgtatctattactatcatccatgttcgtagtattttcatttttctg |
263 |
Q |
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| T |
5911126 |
tactgtatctattactatcatccatgttcgtagtattctcatttttctg |
5911078 |
T |
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