View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5375_high_2 (Length: 618)
Name: NF5375_high_2
Description: NF5375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5375_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 18 - 606
Target Start/End: Original strand, 8839962 - 8840553
Alignment:
| Q |
18 |
gtttgagattcctggttacatagagaagtttttggatcaggtggaggagaatatggtgaagaatgaaactggagaacggaaaggaaaatgggaagagatt |
117 |
Q |
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| T |
8839962 |
gtttgagattcctggttacatagagaagtttttggatcaggtggaggagaatatggtgaagaatgaaactggagaacggaaaggaaaatgggaagagatt |
8840061 |
T |
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| Q |
118 |
atggagaaagataaatggttgcttgaatctgtgcatcgaatttcgaagcttaagaaaatgttgatgattcatgatgaaaaagaaaccatagatgaaagaa |
217 |
Q |
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| T |
8840062 |
atggagaaagataaatggttgcttgaatctgtgcatcgaatttcgaagcttaagaaaatgttgatgattcatgatgaaaaagaaaccatagatgaaagaa |
8840161 |
T |
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| Q |
218 |
gaaagtcaatagccaatcgtgttggtaaaattcaacagaaagcgatggcgtttttggaagaagattttcgcgtgttgatagaatattctagaatccagac |
317 |
Q |
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| T |
8840162 |
gaaagtcaatagccaatcgtgttggtacaattcaacagaaagcgatggcgtttttggaagaagattttcgcgtgttgatagaatattctagaatccagac |
8840261 |
T |
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| Q |
318 |
cgaagtgaatcctgatatcaatatcaatgaaaaggttgatgcaaaacgaa---aagtggcgtcagatcaacaggacgggcaatcagatcatcaggatcaa |
414 |
Q |
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| T |
8840262 |
cgaagtgaatcctgatatcaatatcaatgaaaaggttgatgcaaaacgaaaacaagtggtgtcggatcaacaggacgggcaatcagatcatcaggatcaa |
8840361 |
T |
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| Q |
415 |
ccagaagaattcgaaacgaattttcctggttatcctgatgaggcgattgtttgtatgagtaagattgtgggggagatgttgatcggaggatatgaaagtg |
514 |
Q |
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| T |
8840362 |
ccagaagaattcgaaacgaattttcctggttatcctgatgaggcgattgtttgtatgagcaagattgtgggggagatgttgatcggaggatatgaaagtg |
8840461 |
T |
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| Q |
515 |
agtgttgtcaggtgtacattgtggcgagaaggaccgcgttcgaggagattcaacagcagctggggctggaaagaatcagtattgatgatatt |
606 |
Q |
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| T |
8840462 |
agtgttgtcaggtgtacattgtggcgagaaggaccgcgttcgaggagattcaacagcagctggggctggaaagaatcagtattgatgatatt |
8840553 |
T |
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