View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5375_high_3 (Length: 579)
Name: NF5375_high_3
Description: NF5375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5375_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Complemental strand, 52002799 - 52002405
Alignment:
| Q |
19 |
aataggaatatggatatattatggtgaataaggtggagtgagtaagatatcgagtccaataattaagtaggtaattttagtggtaagaaattgaccttat |
118 |
Q |
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| T |
52002799 |
aataggaatatggatatattatggtgaacaaggtggagtgaataagatatcgagtccactaattaagtaggtaattttagtggtaagaaattgaccttat |
52002700 |
T |
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| Q |
119 |
cgttttaaattacaaatttcaaaatgaaggtgttaattccaactttcaaaatgatagatgaacactcactttttatacaccatcacacaactaactaatc |
218 |
Q |
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| T |
52002699 |
cgttttaaattacaaatttcaaaatgaaggtgttaattccaactttcaaaatgatagatgaacactcactttttatacaccttcacacaactaactaatc |
52002600 |
T |
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| Q |
219 |
acacgttaaaaaatctggttaatttgaattacaaacaaaactgtagttaattgaactacataaattaactgtaagtcatactcttcacatagaagatgag |
318 |
Q |
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| T |
52002599 |
acacgttaaaaaatctggttaatttgatttacaaacaaaactgtagttaattgaactacataaattaacagtaagtcgtactctttacatagaagatgag |
52002500 |
T |
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| Q |
319 |
agaatcactcatgagcctcatgtcttttgaaccatatgatagatagcaaggtcatatgttcgattttgtcgttcaatgtcataataaatagttgg |
413 |
Q |
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| T |
52002499 |
agaatcactcatgagcctcatgtcttttgaaccatatgatagatagtaaggtcatatgtacgattttgttgttcaatgtcataataaatagttgg |
52002405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 448 - 575
Target Start/End: Complemental strand, 52002381 - 52002254
Alignment:
| Q |
448 |
gcatccatcaaactaattaaatattttaacacattgtagtagattttgatcaaccaatttagcgcgggaaaacaagaataagaaacagaaaatggaccca |
547 |
Q |
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| T |
52002381 |
gcatccatcaaactaattaaatattttaacacattgtagtagattttgatcaaccaatttagcgcgggaaaacaagaataagaaacagaaaatggaccca |
52002282 |
T |
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| Q |
548 |
cccaatcccgatgatgtccatctcattg |
575 |
Q |
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| T |
52002281 |
cccaatcccaacgatgtccctcccattg |
52002254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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