View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5375_high_4 (Length: 487)
Name: NF5375_high_4
Description: NF5375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5375_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 20 - 462
Target Start/End: Original strand, 3330319 - 3330760
Alignment:
| Q |
20 |
ctcactttatcactcacttgttttgacatgatcaaaatgtcttttaaagttacacctatcattttagagaatgattaacatatataaatatagttaagag |
119 |
Q |
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| T |
3330319 |
ctcactttatcactcacttgttttgacatgatcaaaatgccttttaaagttacacatatcattttagagaatgattaacatatataaata--gttaagag |
3330416 |
T |
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| Q |
120 |
gattgtcaacaattgacgtgaataataaacacacttcttcatgtggtacaccttatgagttgacacaaaaacaagatataaagaatttatttttcttaat |
219 |
Q |
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| T |
3330417 |
gattgtcaacaattgacgtgattaataaacacacttcttcacgtggtacaccttgtgagttgacacaaaaacaagatataaaaaatttatctttcttaat |
3330516 |
T |
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| Q |
220 |
aaccaccttctcccatcctcaaagaatagagatagtttatcattactaagtttcctttgttacaatatatgtaaacaaatggggctccaaaatgtttgat |
319 |
Q |
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| T |
3330517 |
aaccaccttctcccatcctcaaagaatagagatagtttatcattactaagtttcctttgttacaatatatgtaaacaaatggggctccaaaatgtttgat |
3330616 |
T |
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| Q |
320 |
tttttaatctcttttgcttatattttgttacaaagtaagtattctgtagctttattttttgcaaagaaaatgtagtttttatttttgactcaacaaaatg |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3330617 |
tttttaatctcttttgcttatattttgttacaaagtaagtattttgtagctttattttttgcaaagaaaatgtagtttttatttttgactcaacaaaatg |
3330716 |
T |
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| Q |
420 |
caaaatagataaatgtattttggtg-aaaaaattaatgtaattg |
462 |
Q |
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| T |
3330717 |
caaaatagataaatgtattttggtgaaaaaaattaatgtaattg |
3330760 |
T |
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