View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5375_low_1 (Length: 1114)
Name: NF5375_low_1
Description: NF5375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5375_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 448 - 827
Target Start/End: Complemental strand, 52002381 - 52002002
Alignment:
| Q |
448 |
gcatccatcaaactaattaaatattttaacacattgtagtagattttgatcaaccaatttagcgcgggaaaacaagaataagaaacagaaaatggaccca |
547 |
Q |
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| T |
52002381 |
gcatccatcaaactaattaaatattttaacacattgtagtagattttgatcaaccaatttagcgcgggaaaacaagaataagaaacagaaaatggaccca |
52002282 |
T |
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| Q |
548 |
cccaatcccaacgatgcccctcccattgaggatataacttctatcacagaacaactaaagggccacggtttttccaacaaagaaattggtgcaatcctta |
647 |
Q |
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| T |
52002281 |
cccaatcccaacgatgtccctcccattgaggatataacttctatcacagaacaactaaagggccacggtttttccaacaaagaaattggtgcaatcctta |
52002182 |
T |
|
| Q |
648 |
ccttatccccatcaacatatgttcctgaatctcccaatcatattcatagagatgaaagaccacatgaaccctttctcaagagaggaactgaacccgactc |
747 |
Q |
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| T |
52002181 |
ccttagccccatcaacatatgttcctgaatctcccaatcatattcatagagatgaaagaccacatgaaccctttctcaagagaggaacggaacccgactc |
52002082 |
T |
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| Q |
748 |
cgatgatgcctcttcttctaaacgcacaaaactctacaactttgaaaacacttccgatccaaaaggaaagaaaccactca |
827 |
Q |
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| T |
52002081 |
cgatgatgcctcttcttctaaacgcacaaaactctacaactttgaaaacacttctgatccaaaaggaaagaaaccactca |
52002002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Complemental strand, 52002799 - 52002405
Alignment:
| Q |
19 |
aataggaatatggatatattatggtgaataaggtggagtgagtaagatatcgagtccaataattaagtaggtaattttagtggtaagaaattgaccttat |
118 |
Q |
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| T |
52002799 |
aataggaatatggatatattatggtgaacaaggtggagtgaataagatatcgagtccactaattaagtaggtaattttagtggtaagaaattgaccttat |
52002700 |
T |
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| Q |
119 |
cgttttaaattacaaatttcaaaatgaaggtgttaattccaactttcaaaatgatagatgaacactcactttttatacaccatcacacaactaactaatc |
218 |
Q |
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| T |
52002699 |
cgttttaaattacaaatttcaaaatgaaggtgttaattccaactttcaaaatgatagatgaacactcactttttatacaccttcacacaactaactaatc |
52002600 |
T |
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| Q |
219 |
acacgttaaaaaatctggttaatttgaattacaaacaaaactgtagttaattgaactacataaattaactgtaagtcatactcttcacatagaagatgag |
318 |
Q |
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| T |
52002599 |
acacgttaaaaaatctggttaatttgatttacaaacaaaactgtagttaattgaactacataaattaacagtaagtcgtactctttacatagaagatgag |
52002500 |
T |
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| Q |
319 |
agaatcactcatgagcctcatgtcttttgaaccatatgatagatagcaaggtcatatgttcgattttgtcgttcaatgtcataataaatagttgg |
413 |
Q |
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| T |
52002499 |
agaatcactcatgagcctcatgtcttttgaaccatatgatagatagtaaggtcatatgtacgattttgttgttcaatgtcataataaatagttgg |
52002405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 859 - 1104
Target Start/End: Complemental strand, 52002003 - 52001758
Alignment:
| Q |
859 |
cattgatgatcatcatcagaggaaggaaataccagaaaatcaaatacctttggcttttgatatcaatgcttataatattaacagcgaaactgaaactgat |
958 |
Q |
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| T |
52002003 |
cattgatgatcatcatcagaggaaggaaataccagaaaatcaactacctttggcttttgatatcaatgcttataatattaacagcgaaactgaaactgat |
52001904 |
T |
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| Q |
959 |
gatagcgacaacgatgatgattttgagatttgtaggaacgagtcatttattagaagtcagtacaagctatttaacaaagacactgcaaagagatttgcgt |
1058 |
Q |
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| T |
52001903 |
gatagcgacaacgatgatgattttgagatttgtaggaacgagtcatttattagaagtcagtacaagctatttaacaaagacactgcaaagagatttgcgt |
52001804 |
T |
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| Q |
1059 |
cacgcattcatagtgtttcagagaataaagaaaaagatgatgatgt |
1104 |
Q |
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| T |
52001803 |
cacgcattcatagtgtttcagagaataaagaaaaagatgatgatgt |
52001758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 873 - 966
Target Start/End: Complemental strand, 52011878 - 52011785
Alignment:
| Q |
873 |
atcagaggaaggaaataccagaaaatcaaatacctttggcttttgatatcaatgcttataatattaacagcgaaactgaaactgatgatagcga |
966 |
Q |
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| T |
52011878 |
atcagaggaaggaaataacagaaaatcaaatatcactggatttggatattaatgactatatcattaccaatgaaactgaaactaatgatagcga |
52011785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 586 - 637
Target Start/End: Complemental strand, 52012216 - 52012165
Alignment:
| Q |
586 |
ttctatcacagaacaactaaagggccacggtttttccaacaaagaaattggt |
637 |
Q |
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|||| ||||| ||||||| ||||| |||||||||||| |||||||||||||| |
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| T |
52012216 |
ttctgtcacaaaacaactcaagggtcacggtttttccgacaaagaaattggt |
52012165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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