View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5375_low_6 (Length: 229)
Name: NF5375_low_6
Description: NF5375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5375_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 34899761 - 34899548
Alignment:
| Q |
1 |
agatgatatcactgacaatatgataatttggtatctcttgcctatcttattataacatttgcatatgcttgtgtggtacgttacgcataaaaaccaagtg |
100 |
Q |
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| T |
34899761 |
agatgatatcactgacaatatgataatttggtatctcttgcctatcttattataacatttgcatatgcttgtgtggtac-ttacgcataaaaaccaagtg |
34899663 |
T |
|
| Q |
101 |
gaacatgtcaactgacccactaattgaggttctcctaataactaagaacatttttagagacacattttcgatattcaattttctgcattcagctaccaac |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899662 |
gaacatgtcaactgacccactagttgaggttctcctaataactaagaacatttttagagacacattttcgatattcaattttctgcattcagctaccaac |
34899563 |
T |
|
| Q |
201 |
taattatttgtaagt |
215 |
Q |
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||||||||||||||| |
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| T |
34899562 |
taattatttgtaagt |
34899548 |
T |
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