View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5376-Insertion-2 (Length: 886)
Name: NF5376-Insertion-2
Description: NF5376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5376-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 8 - 449
Target Start/End: Original strand, 2786511 - 2786952
Alignment:
| Q |
8 |
gttgtgaccacagaagaattgctccataacgaaatgatggaaactttcacgtttggtatctacgagagcatgattcgtttgcatatcgttacttgcatgt |
107 |
Q |
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| T |
2786511 |
gttgtgaccacacaagaattgctccataacgaaatgatggaaactttcacgtttggtatctacgggagcatgattcgtttgcatattgttacttgcatgt |
2786610 |
T |
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| Q |
108 |
tcggatgtcataattcataaaagtataacttagcatcaaagaattgagtattgaaaaaattgaactgtatatgtattcattgcattattatatcatcatt |
207 |
Q |
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| T |
2786611 |
ttggatgtcataattcataaaagtataacttagcatcaaagaattgagtattgaaaaaattgaactgtatatgtattcattgcattattatatcatcatt |
2786710 |
T |
|
| Q |
208 |
ggttagtgatatgatccattcattgtagaaagagaattcaaatgatcgttgtcgtacaataatatcattgggaacatgttaaggttccccatatgctagc |
307 |
Q |
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| T |
2786711 |
ggttagtgatatgatccattcattgtagaaagagaattcaaatgatcgttgtcgtacaataatatcattgtgaacatgttaaggttccccatatgctagc |
2786810 |
T |
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| Q |
308 |
taacatgcacctgtcacatttcaatatatttttcttccttttctgttacatttcttatccatttgccatcacgacaagttaaaggaacacatgcttattt |
407 |
Q |
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| T |
2786811 |
taacatgcacctgtcacatttcaatatatttttcttccttttctgttacatttcttatccatttgccatcacgacaagttaaaggaacacatgcttattt |
2786910 |
T |
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| Q |
408 |
atgatatattttcattatttaacaaattgtatgctgagtcta |
449 |
Q |
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| T |
2786911 |
atgatatattttcattatttaacaaattgtatgctgagtcta |
2786952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 499 - 886
Target Start/End: Original strand, 2787155 - 2787539
Alignment:
| Q |
499 |
tatatagataatatctaatctaataaaaaagttaatatgtcaaatagtgcattatagtatattctttatgccttcctaagttgcttaaccaagaatataa |
598 |
Q |
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| T |
2787155 |
tatatagataatatctaatctaataaaa-agttaatatgtcaaatagtgcattatagtatattctttatgccttcctaagttgcttaaccaagaatataa |
2787253 |
T |
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| Q |
599 |
cttcaccacatgatttgagtgtagtatatatatgtctcactttctcggatcggtatttccatttgagaattatcaacaaaatccacacaaaaaaggaaac |
698 |
Q |
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| T |
2787254 |
cttcaccacatgatttgagtgtagtatatatatgtctcactttctcggatcggtatttccatttgagaattatcaacaaaatccacacaaaaaaggaaac |
2787353 |
T |
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| Q |
699 |
ttttagaaaaaatgactacaaattcaagcactactattcatagctaccccatcaaaacggtgggtcattttggttcaagagaaccgttcttttgaccaca |
798 |
Q |
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| T |
2787354 |
tttcagaaaaaatgactacaaattctagcactactattcatagctaccccatcaaaacagt-ggtcattttggttcaagagaaccgttcttttgaccaca |
2787452 |
T |
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| Q |
799 |
tgttgggttggatgaagtccctcaacccgaaaatcaacggtgtttatcggtacagagtcaaactcaatctccacatctgattccaact |
886 |
Q |
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| T |
2787453 |
tgttgggttggatgaagtccctcaacccgaaaatcaacggtg-ttatcggtacagagtcaaactcaatctccacatctgattccaact |
2787539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 478 - 770
Target Start/End: Original strand, 2826608 - 2826904
Alignment:
| Q |
478 |
gtaatttatctaaaattagtatatatagataatatctaatctaataaaaaagttaatatgtcaaatagtgcattatagtatattctttatgccttcctaa |
577 |
Q |
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|||||||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2826608 |
gtaatttacataaaattattatatataaataatatctaatctaataaagaagttaatatgtcaaatagtgcattatagtatattctttatgccttcctaa |
2826707 |
T |
|
| Q |
578 |
gttgcttaaccaagaatataacttcaccacatgatttgagtgtagtatatatat----gtctcactttctcggatcggtatttccatttgagaattatca |
673 |
Q |
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| T |
2826708 |
gttactgcaccaagaatataacttcaccacatgatttgagtgtagtatatatatatatgtctcactttcttggattggtattcccatttgagaattatca |
2826807 |
T |
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| Q |
674 |
acaaaatccacacaaaaa----aggaaacttttagaaaaaatgactacaaattcaagcactactattcatagctaccccatcaaaacggtgggtcatttt |
769 |
Q |
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| T |
2826808 |
acaaaatccacacaaaaacaaaaggaaattttca-agaaaatgacttcaaattctagcacta--attcatagctatcccatcaaaac-gttggtcatttt |
2826903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 305 - 405
Target Start/End: Original strand, 2826035 - 2826142
Alignment:
| Q |
305 |
agctaacatgcacct--gtcacatttcaatat--atttttcttccttttctgttacatttcttatccatttgccatc---acgacaagttaaaggaacac |
397 |
Q |
| |
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||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
2826035 |
agctaacatgcacctttgttacatttcaatatatatttttcttccttttctgttacatttcttatccattttccatcacgacgacaagttaaaggaacac |
2826134 |
T |
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| Q |
398 |
atgcttat |
405 |
Q |
| |
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|||||||| |
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| T |
2826135 |
atgcttat |
2826142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 626 - 755
Target Start/End: Original strand, 7362498 - 7362626
Alignment:
| Q |
626 |
atatatgtctcactttctcggatcggtatttccatttgagaattatcaacaaaatccacacaaaaaaggaaacttttagaaaaaatgactacaaattcaa |
725 |
Q |
| |
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|||||||| ||||||||||| | |||||| |||||||||||||||||||||||| ||| |||||| ||| |||| | ||||||||| ||||||| | |
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| T |
7362498 |
atatatgtttcactttctcgaaatggtattcccatttgagaattatcaacaaaatttaca-taaaaagcaaaattttcaagaaaatgacttcaaattcta |
7362596 |
T |
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| Q |
726 |
gcactactattcatagctaccccatcaaaa |
755 |
Q |
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| T |
7362597 |
gcattactactcgtagctacaccatcaaaa |
7362626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 2823506 - 2823447
Alignment:
| Q |
32 |
cataacgaaatgatggaaactttcacgtttggtatctacgagagcatgattcgtttgcat |
91 |
Q |
| |
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||||| |||||||||||||||||||| |||||||| |||| ||||||||||||||||||| |
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| T |
2823506 |
cataatgaaatgatggaaactttcacttttggtatatacgggagcatgattcgtttgcat |
2823447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 478 - 514
Target Start/End: Original strand, 2786977 - 2787013
Alignment:
| Q |
478 |
gtaatttatctaaaattagtatatatagataatatct |
514 |
Q |
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| T |
2786977 |
gtaatttatctaaaattagtatatatagataatatct |
2787013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 323 - 400
Target Start/End: Original strand, 2804645 - 2804720
Alignment:
| Q |
323 |
acatttcaatatatttttcttccttttctgttacatttcttatccatttgccatcacgacaagttaaaggaacacatg |
400 |
Q |
| |
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|||||||||||| ||||||| |||||||| | |||||||||||||||| |||||| ||||||||||||| ||||| |
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| T |
2804645 |
acatttcaatatgattttctttcttttctggtgcatttcttatccattt--tatcacggcaagttaaaggaatacatg |
2804720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 2804296 - 2804334
Alignment:
| Q |
206 |
ttggttagtgatatgatccattcattgtagaaagagaat |
244 |
Q |
| |
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|||||||||||||||||||||| |||||||||| ||||| |
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| T |
2804296 |
ttggttagtgatatgatccattaattgtagaaatagaat |
2804334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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