View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5376-Insertion-3 (Length: 974)
Name: NF5376-Insertion-3
Description: NF5376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5376-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 703; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 8 - 957
Target Start/End: Original strand, 32965464 - 32966381
Alignment:
| Q |
8 |
ccaccaccccacatgagcactgtacaaaaagtcaggaccaaattcaaggaaacatttttccctgatgatcctatgcgacaattcaagggacaaccatgta |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32965464 |
ccaccaccccacatgagcactgtacaaaaagtcaggaccaaattcaaggaaacatttttccctgatgatcctatgcgacaattcaagggacaaccatgta |
32965563 |
T |
|
| Q |
108 |
acagaaaattaatccttggagctcaatannnnnnncctattcttcagtggttacctaattacaatttcaaactccttaaagctgaccttatatctggcct |
207 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32965564 |
acagaaaattaatccttggagctcaatatttttttcctattcttcagtggttacctaattacaatttcaaactccttaaagctgaccttatatctggcct |
32965663 |
T |
|
| Q |
208 |
caccattgctagcttggccatccctcaggttaacttgtttaataatttaattatctccctttagtttttagcttgtttaatactcatcgtatttaattat |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||| |
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| T |
32965664 |
caccattgctagcttggccatccctcaggttaacttgtttaataattaa-------------------tagcttttttaatactcatcgtatttaattat |
32965744 |
T |
|
| Q |
308 |
tgaaattattttccagggaattagttatgccaagcttgcaagtcttcctcctattataggactttgtgagtatgttaattaattctagtttcctataagt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32965745 |
tgaaattattttccagggaattagttatgccaagcttgcaagtcttcctcctattataggactttgtgagtatgttaattaattctagtttcctataagt |
32965844 |
T |
|
| Q |
408 |
tcacaaatgccaatgtgataataggnnnnnnnnnnnnnnnggatatgaat--------atatatatttcagattctagttttgttccaccactagtttat |
499 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32965845 |
tcacaaatgccaatgtgataatagg-----ttttttttttggatattaatatttatatatatatatttcagattctagttttgttccaccactagtttat |
32965939 |
T |
|
| Q |
500 |
gttgttcttggaagctcaagagatttagcagtgggacctgtttctattgcttctcttgtattaggatccatgcttgcagaggaagtatctcccacaacag |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32965940 |
gttgttcttggaagctcaagagatttagcagtgggacctgtttctattgcttctcttgtattaggatccatgcttgcagaggaagtatctcccacaacag |
32966039 |
T |
|
| Q |
600 |
aatctggtctttttgttcagttagcttttacttcaacatgttttgctggtatttttcaagcagctcttggaattctaaggtaatatcactcatttattct |
699 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32966040 |
aatctggtctttttgttcagttagcttttacttcaacatgttttgctggtatttttcaagcagctcttggaattctaaggtaatatcact---------- |
32966129 |
T |
|
| Q |
700 |
catagcattttgttttacttttaaatttaaataaagtttgatacaaaatgattgaattatacagggctaggatttatcattgattttctatctaaggcaa |
799 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
32966130 |
-----cattttgttttacttttaaatttaaataaagtgtgatacaaaatgattgaattataca-ggctaggatttatcattgattttctatctaaggcaa |
32966223 |
T |
|
| Q |
800 |
ccttaattgggtttatggctggagctgccataattgtgtctctacaacaactaaaaagcttacttggcatcacacattttactaaagagatgggcattat |
899 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32966224 |
ccttaattgggtttatggctggagctgccataattgtgtctctacaacaactaaaaagcttacttggcatcacacattttactaaagagatgggcattat |
32966323 |
T |
|
| Q |
900 |
tcctgtcatgcattctggtttttcaccacactgatga-gttgctcatttacactttctc |
957 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||| |
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|
| T |
32966324 |
tcctgtcatgcattct-gtttttcaccacactgatgaggttgctcattaacactttctc |
32966381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 457 - 683
Target Start/End: Original strand, 32954638 - 32954864
Alignment:
| Q |
457 |
tatatatatttcagattctagttttgttccaccactagtttatgttgttcttggaagctcaagagatttagcagtgggacctgtttctattgcttctctt |
556 |
Q |
| |
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||||||| || ||||||||||||||||||| ||||| |||||| |||||||||||| ||||| ||| ||||||| |||||||||||||||||||| ||| |
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|
| T |
32954638 |
tatatattttgcagattctagttttgttcctccacttatttatgctgttcttggaagttcaagggatctagcagtaggacctgtttctattgcttcactt |
32954737 |
T |
|
| Q |
557 |
gtattaggatccatgcttgcagaggaagtatctcccacaacagaatctggtctttttgttcagttagcttttacttcaacatgttttgctggtatttttc |
656 |
Q |
| |
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|| |||||||| |||||| | | ||||| ||||| || ||||| ||| ||| ||| |||| ||||| |||||||||| | |||||||||| | |||| |
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| T |
32954738 |
gttttaggatctatgcttagacaagaagtgtctccttcagcagaacctgttctgtttcttcaactagctcttacttcaaccttttttgctggtctatttc |
32954837 |
T |
|
| Q |
657 |
aagcagctcttggaattctaaggtaat |
683 |
Q |
| |
|
|||| | || |||||||||||||||| |
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| T |
32954838 |
aagcttcactaggaattctaaggtaat |
32954864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 764 - 878
Target Start/End: Original strand, 32954958 - 32955072
Alignment:
| Q |
764 |
ggctaggatttatcattgattttctatctaaggcaaccttaattgggtttatggctggagctgccataattgtgtctctacaacaactaaaaagcttact |
863 |
Q |
| |
|
||||||||||||||||||||||| |||| || |||| ||||||||| || |||||||||||||| |||||||||||| | |||||||| || ||| |||| |
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| T |
32954958 |
ggctaggatttatcattgattttttatccaaagcaatcttaattggattcatggctggagctgctataattgtgtctttgcaacaacttaagagcctact |
32955057 |
T |
|
| Q |
864 |
tggcatcacacattt |
878 |
Q |
| |
|
||| ||||||||||| |
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| T |
32955058 |
tggaatcacacattt |
32955072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 238
Target Start/End: Original strand, 32954255 - 32954442
Alignment:
| Q |
51 |
tcaaggaaacatttttccctgatgatcctatgcgacaattcaagggacaaccatgtaacagaaaattaatccttggagctcaatannnnnnncctattct |
150 |
Q |
| |
|
|||||||||| |||||||||||||||||| | || |||||||| |||||| || | | | || | ||||| | |||||| |||| |||||||| |
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| T |
32954255 |
tcaaggaaacttttttccctgatgatcctttacgccaattcaaaggacaaacacttcaaaaaagactaatcttaggagctaaatattttttccctattct |
32954354 |
T |
|
| Q |
151 |
tcagtggttacctaattacaatttcaaactccttaaagctgaccttatatctggcctcaccattgctagcttggccatccctcaggtt |
238 |
Q |
| |
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||| ||| ||| ||| | ||||||||| ||||| |||||||| | ||||| ||||| ||||||||||| |||||||| |||||| |
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|
| T |
32954355 |
tcaatggggttctatttatagcttcaaactctttaaatctgaccttgtttctggtctcactattgctagcttagccatcccacaggtt |
32954442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 355
Target Start/End: Original strand, 32954526 - 32954559
Alignment:
| Q |
322 |
agggaattagttatgccaagcttgcaagtcttcc |
355 |
Q |
| |
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||||||||||||||||||||||||||| |||||| |
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|
| T |
32954526 |
agggaattagttatgccaagcttgcaaatcttcc |
32954559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 625 - 683
Target Start/End: Original strand, 46482571 - 46482629
Alignment:
| Q |
625 |
ttttacttcaacatgttttgctggtatttttcaagcagctcttggaattctaaggtaat |
683 |
Q |
| |
|
||||||||||| || | ||||| | | ||||||||||||||||||||||||||||||| |
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|
| T |
46482571 |
ttttacttcaaaattctctgctgatctctttcaagcagctcttggaattctaaggtaat |
46482629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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