View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5376-Insertion-4 (Length: 934)
Name: NF5376-Insertion-4
Description: NF5376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5376-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 174 - 932
Target Start/End: Complemental strand, 49715345 - 49714573
Alignment:
| Q |
174 |
taattcatttttgtgaactgtaagtaaaccaaaattggtcagcatcaatgcaaaatgaaatcttatactaatcggcagaaaatcgttgaaagaaaatgag |
273 |
Q |
| |
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||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
49715345 |
taattcatttttgtgaactgttagtaaaccaaaataggtcagcatcaatgcaaagtgaaatcttatactaatcagcagaaaatcgtagaaagaaaatgag |
49715246 |
T |
|
| Q |
274 |
aaataaataagaaggggcgattgtggatagctattagctaattatgccatttggacctcagagccaatgttttcttgatcaaggagttatataagaactc |
373 |
Q |
| |
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|| ||||| |||||| |||||| |||| ||||||||||| |||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49715245 |
aagtaaatcagaaggaacgattgaggattgctattagctagttataccatgtggacctgagagccaatgttttcttgatcaaggagttatataagaactc |
49715146 |
T |
|
| Q |
374 |
agtaatagactcatcataatattttctccataaa-------------ccattagttgcacaactagaaaatccacactgagaagctcatnnnnnnnnnnn |
460 |
Q |
| |
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|| ||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
49715145 |
agctgtagactcatcataatatcttctccataaaagtcaaccataaaccattagttgcactactagaaaatccacattgagaagctcataaaacaaaaaa |
49715046 |
T |
|
| Q |
461 |
nnnnnnnnn--gtgatacaacattgcaattgtatttgttaagtaacattttatttatatgtgaattatcatgacattcttttatagtgttacatactctg |
558 |
Q |
| |
|
||||||||||||| ||||| |||| |||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
49715045 |
ccaaaaagaaagtgatacaacattacaattctattagttacataacattttatttatatatgaattatcatgacattcttttatagggttacatactctg |
49714946 |
T |
|
| Q |
559 |
cattgaatcataaaaaccacactgatcacaataactcagatgataaatgagctgaagatgttgaaggagacgacaaaaagggtttgggtggtatttccag |
658 |
Q |
| |
|
||||| ||||||||| | ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49714945 |
cattgcatcataaaatctacacttatcactctatttcagatgataaatgagctgaagatgttgaaggagacgacaaaaagggtttgggtggtatttccag |
49714846 |
T |
|
| Q |
659 |
cacttgaaggctcccttccaacatttccaccactttatgcattcctggtcgatgcgaagggtcggtttgtatgcaccataaactcaccactgtcattttt |
758 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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|
| T |
49714845 |
cacttgaaggctcccttccaacatttccaccactttatgcattcctggtcgatgcgaagggtcagttcgtatgcaccataaactcaccactgtcattttt |
49714746 |
T |
|
| Q |
759 |
cttaccatttcttcatcaatttcatttttaatacacttgagtccaagatcctgattcaattcaagacgcttgtaaatccagtgtggaaaatataactcgc |
858 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49714745 |
cttaccatttcttcatcaatttcatttttaatacacctcagttcaagatcctgattcaattcaagacgcttgtaaatccagtgtggaaaatataactcgc |
49714646 |
T |
|
| Q |
859 |
tagaacaatcaacttcaaccttaatgnnnnnnncttcgaccaaccatttctaaaaccatcattccataactata |
932 |
Q |
| |
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| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
49714645 |
tggaacaatcaacttcaaccttaatg-ttctttcttcggccaaccatttctaaaaccatcattccataactata |
49714573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 501 - 934
Target Start/End: Complemental strand, 49711364 - 49710931
Alignment:
| Q |
501 |
taacattttatttatatgtg-aattatcatgacattcttttatagtgttacatactctgcattgaatcataaaaaccacactgatcacaataactcagat |
599 |
Q |
| |
|
||||||||||||| ||| || |||||||| ||||| |||| |||||||||||||||||||||| ||| ||| | ||| | ||||||||| |||||| |
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| T |
49711364 |
taacattttatttttatatgtaattatcacgacatcattttctagtgttacatactctgcattgcatcttaatatccataaaaatcacaatatttcagat |
49711265 |
T |
|
| Q |
600 |
gataaatgagctgaagatgttgaaggagacgacaaaaagggtttgggtggtatttccagcacttgaaggctcccttccaacatttccaccactttatgca |
699 |
Q |
| |
|
|||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||| |
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| T |
49711264 |
gataaatggattggagatgttgaaggagaagacaaaaagggtttgggtggtatttccagcatttgaagactcccttccagcatttccaccactttatgca |
49711165 |
T |
|
| Q |
700 |
ttcctggtcgatgcgaagggtcggtttgtatgcaccataaactcaccactgtcatttttcttaccatttcttcatcaatttcatttttaatacacttgag |
799 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||| |||||| |
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|
| T |
49711164 |
ttgctggtcgatgagaagggtcggtttgtatgcaccataaactcaccactgacatttttctgaccatttcttcatcattttcatttttaatactcttgag |
49711065 |
T |
|
| Q |
800 |
tccaagatcctgattcaattcaagacgcttgtaaatccagtgtggaaaatataactcgctagaacaatcaacttcaaccttaatgnnnnnnncttcgacc |
899 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
49711064 |
tccaagatcctgattcaattcaagacgcttgtaaatccagtgtggaaaatataactcgctagaacaatcaacttcaaccttaatg-ttctttcttcgacc |
49710966 |
T |
|
| Q |
900 |
aaccatttctaaaaccatcattccataactataga |
934 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
49710965 |
aaccatctctaaaaccatcattccgtaactgtaga |
49710931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 507 - 932
Target Start/End: Complemental strand, 49216012 - 49215595
Alignment:
| Q |
507 |
tttatttatatgtgaattatcatgacattcttttatagtgttacatactctgcattgaatcataaaaaccacactgatcacaataactcagatgataaat |
606 |
Q |
| |
|
|||||||||||||||||||||||| || |||||| || |||||||||||||||||| || || | |||||| || |||| | |||||||||| || |
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|
| T |
49216012 |
tttatttatatgtgaattatcatggcactcttttctatcgttacatactctgcattgcatttcaatatccacacaaattacaacatttcagatgatagat |
49215913 |
T |
|
| Q |
607 |
gagctgaagatgttgaaggagacgacaaaaagggtttgggtggtatttccagcacttgaaggctcccttccaacatttccaccactttatgcattcctgg |
706 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
49215912 |
tgataggtgatgttgaaggagaagacaaaaagggtttgggtggtatttcaagcacttgaaggctcccttccaacatttccaccactttatgcattgctgg |
49215813 |
T |
|
| Q |
707 |
tcgatgcgaagggtcggtttgtatgcaccataaactcaccactgtcatttttcttaccatttcttcatcaatttcatttttaatacacttgagtccaaga |
806 |
Q |
| |
|
||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
49215812 |
tcgattcaaagggtctgtttgtatgcaccataaactcaccactgtcatttttcttaccatttcttcatcaatttcatttttaatacacctgagtccaaga |
49215713 |
T |
|
| Q |
807 |
tcctgattcaattcaagacgcttgtaaatccagtgtggaaaatataactcgctagaacaatcaacttcaaccttaatgnnnnnnncttcgaccaaccatt |
906 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| ||||||| |
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|
| T |
49215712 |
tcctgattcaattcaagacgcttgtaaatccagtgtggaaaatattactc-------caatcaacttcaaccttaatg-ttctttcttcgacaaaccatt |
49215621 |
T |
|
| Q |
907 |
tctaaaaccatcattccataactata |
932 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
49215620 |
tctaaaaccatcattccataactata |
49215595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 613 - 934
Target Start/End: Complemental strand, 49683641 - 49683321
Alignment:
| Q |
613 |
aagatgttgaaggagacgacaaaaagggtttgggtggtatttccagcacttgaaggctcccttccaacatttccaccactttatgcattcctggtcgatg |
712 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||| |||| |||||||||| |
|
|
| T |
49683641 |
aagatcttgaaggagaggacaaaaagggtttgggtggtatttctagcacttgaaggctcccttctagcatttccaccactttattcattgctggtcgatg |
49683542 |
T |
|
| Q |
713 |
cgaagggtcggtttgtatgcaccataaactcaccactgtcatttttcttaccatttcttcatcaatttcatttttaatacacttgagtccaagatcctga |
812 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
49683541 |
tgaagggtcggttggtatgcaccataaactcaccattgtcatctttcttaccatctcttcatcaatttcatttttaatacacttgagtccaagatcttga |
49683442 |
T |
|
| Q |
813 |
ttcaattcaagacgcttgtaaatccagtgtggaaaatataactcgctagaacaatcaacttcaaccttaatgnnnnnnncttcgaccaaccatttctaaa |
912 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||||||| |
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|
| T |
49683441 |
ttcaattcaagacgcttgtagatccaatgtggaaaatataactcgctagaacaatccacttcaactttgatg-ttctttcttcgaccaaccatttctaaa |
49683343 |
T |
|
| Q |
913 |
accatcattccataactataga |
934 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
49683342 |
accatcattccataactgtaga |
49683321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 594 - 877
Target Start/End: Complemental strand, 49688559 - 49688276
Alignment:
| Q |
594 |
tcagatgataaatgagctgaagatgttgaaggagacgacaaaaagggtttgggtggtatttccagcacttgaaggctcccttccaacatttccaccactt |
693 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
49688559 |
tcagatgataaatggatcgaagatgtagaaggagaagacaaaaagggtttgggtggtatttccagcacttcaaggctcccttccagcatttccaccactt |
49688460 |
T |
|
| Q |
694 |
tatgcattcctggtcgatgcgaagggtcggtttgtatgcaccataaactcaccactgtcatttttcttaccatttcttcatcaatttcatttttaataca |
793 |
Q |
| |
|
|||||||| || |||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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|
| T |
49688459 |
tatgcattgcttgtcggtgtgaaggatcggtttgtatgcaccataaactcaccactgtcatttttcttaccatttcttcatcattttcatttttaataga |
49688360 |
T |
|
| Q |
794 |
cttgagtccaagatcctgattcaattcaagacgcttgtaaatccagtgtggaaaatataactcgctagaacaatcaacttcaac |
877 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
49688359 |
cttgagtccaagatcttgattcaattcaagacgcttgtaaatccaatgtggaaaatataaatcgctagaacaatccacttcaac |
49688276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 401 - 441
Target Start/End: Complemental strand, 49216119 - 49216079
Alignment:
| Q |
401 |
ccataaaccattagttgcacaactagaaaatccacactgag |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49216119 |
ccataaaccattagttgcacaactagaaaatccacattgag |
49216079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 714 - 852
Target Start/End: Complemental strand, 49725566 - 49725428
Alignment:
| Q |
714 |
gaagggtcggtttgtatgcaccataaactcaccactgtcatttttcttaccatttcttcatcaatttcatttttaatacacttgagtccaagatcctgat |
813 |
Q |
| |
|
||||||| ||||||||||||||||| | ||| | |||||| ||||| ||| |||| ||||||||||||||| | | | | | ||||||||||||| |
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|
| T |
49725566 |
gaagggttggtttgtatgcaccatagagccactattgtcatctttctcaccttttcgtcatcaatttcatttcttacattccgtaaaccaagatcctgat |
49725467 |
T |
|
| Q |
814 |
tcaattcaagacgcttgtaaatccagtgtggaaaatata |
852 |
Q |
| |
|
| | |||||||| ||||||||||| || |||||||||| |
|
|
| T |
49725466 |
ttgaatcaagacggttgtaaatccaatgaggaaaatata |
49725428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 264 - 356
Target Start/End: Complemental strand, 49247165 - 49247072
Alignment:
| Q |
264 |
agaaaatgagaaataaataagaaggggcgattgtggatagctattagctaattatgccat-ttggacctcagagccaatgttttcttgatcaag |
356 |
Q |
| |
|
|||||||||||| ||||| |||| || | |||||||||| |||| |||| ||||| || || || || |||||||||||||||||||||||| |
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|
| T |
49247165 |
agaaaatgagaagtaaatcagaaaggaccattgtggatatatatttgctagttatggcagctttgatctgagagccaatgttttcttgatcaag |
49247072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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