View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5376-Insertion-5 (Length: 656)

Name: NF5376-Insertion-5
Description: NF5376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5376-Insertion-5
NF5376-Insertion-5
[»] chr6 (4 HSPs)
chr6 (88-145)||(28699333-28699390)
chr6 (100-132)||(34925139-34925171)
chr6 (413-487)||(26210747-26210821)
chr6 (100-133)||(34929503-34929536)
[»] chr8 (2 HSPs)
chr8 (430-486)||(27505696-27505752)
chr8 (413-487)||(29802714-29802788)
[»] chr3 (3 HSPs)
chr3 (413-463)||(9281470-9281520)
chr3 (430-487)||(22755517-22755574)
chr3 (430-468)||(28389278-28389316)
[»] chr5 (1 HSPs)
chr5 (419-499)||(34278746-34278827)
[»] chr4 (2 HSPs)
chr4 (430-487)||(20651426-20651483)
chr4 (413-441)||(19525946-19525974)


Alignment Details
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 28699333 - 28699390
Alignment:
Q  88 tctggaatcttggtcttgttattctgtactatttcctatataactatttgaatgtgtt 145  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28699333 tctggaatcttggtcttgttattctgtactatttcctatatagctatttgaatgtgtt 28699390  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 34925171 - 34925139
Alignment:
Q  100 gtcttgttattctgtactatttcctatataact 132  Q
    |||||||||||||||||||||||||||||||||    
T  34925171 gtcttgttattctgtactatttcctatataact 34925139  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 413 - 487
Target Start/End: Original strand, 26210747 - 26210821
Alignment:
Q  413 actccctccgtcctatattaaatgacctaatttcaaaatgtgtactattcatataagataatttgaccttatttt 487  Q
    ||||||||  ||||||||||||||||||||||| |||||   || | ||| ||||| || |||||||||||||||    
T  26210747 actccctctttcctatattaaatgacctaatttaaaaatacatattgttcgtataacatgatttgaccttatttt 26210821  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 34929536 - 34929503
Alignment:
Q  100 gtcttgttattctgtactatttcctatataacta 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  34929536 gtcttgttattctgtactatttcctatatgacta 34929503  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 430 - 486
Target Start/End: Original strand, 27505696 - 27505752
Alignment:
Q  430 ttaaatgacctaatttcaaaatgtgtactattcatataagataatttgaccttattt 486  Q
    |||||||||||||||| |||| ||||||||||||||||| ||  |||||||||||||    
T  27505696 ttaaatgacctaatttaaaaaagtgtactattcatataacatgctttgaccttattt 27505752  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 487
Target Start/End: Complemental strand, 29802788 - 29802714
Alignment:
Q  413 actccctccgtcctatattaaatgacctaatttcaaaatgtgtactattcatataagataatttgaccttatttt 487  Q
    ||||||||| ||| || ||| |||||||||||| |||||||||| ||||||||||| ||  ||||||| ||||||    
T  29802788 actccctccatcccattttatatgacctaatttgaaaatgtgtattattcatataatatgttttgaccatatttt 29802714  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 9281520 - 9281470
Alignment:
Q  413 actccctccgtcctatattaaatgacctaatttcaaaatgtgtactattca 463  Q
    ||||||||||||| || |||||||||||||||| ||||||| |||||||||    
T  9281520 actccctccgtcccattttaaatgacctaatttgaaaatgtctactattca 9281470  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 430 - 487
Target Start/End: Original strand, 22755517 - 22755574
Alignment:
Q  430 ttaaatgacctaatttcaaaatgtgtactattcatataagataatttgaccttatttt 487  Q
    ||||||||||||||||||||||||| |||||||| |||| ||  ||||||| ||||||    
T  22755517 ttaaatgacctaatttcaaaatgtgcactattcacataacatgttttgaccatatttt 22755574  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 430 - 468
Target Start/End: Complemental strand, 28389316 - 28389278
Alignment:
Q  430 ttaaatgacctaatttcaaaatgtgtactattcatataa 468  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  28389316 ttaaatgacctactttaaaaatgtgtactattcatataa 28389278  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 419 - 499
Target Start/End: Complemental strand, 34278827 - 34278746
Alignment:
Q  419 tccgtcctatattaaatgacctaatttcaaaatgtgtactattcatataagataatttgacctta-ttttctactaaaatat 499  Q
    ||||||| || ||| |||||||||||| |||||||||| | ||||||||| ||  |||||||||| ||||||||||| ||||    
T  34278827 tccgtcccattttatatgacctaattttaaaatgtgtattgttcatataacatgttttgaccttatttttctactaatatat 34278746  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 487
Target Start/End: Original strand, 20651426 - 20651483
Alignment:
Q  430 ttaaatgacctaatttcaaaatgtgtactattcatataagataatttgaccttatttt 487  Q
    |||||||| ||||||| |||||||| ||||||||||||| ||| ||||| | ||||||    
T  20651426 ttaaatgatctaatttaaaaatgtgaactattcatataatatattttgatcatatttt 20651483  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 413 - 441
Target Start/End: Complemental strand, 19525974 - 19525946
Alignment:
Q  413 actccctccgtcctatattaaatgaccta 441  Q
    |||||||||||||||||||||||||||||    
T  19525974 actccctccgtcctatattaaatgaccta 19525946  T

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