View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5376_low_1 (Length: 339)

Name: NF5376_low_1
Description: NF5376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5376_low_1
NF5376_low_1
[»] chr8 (5 HSPs)
chr8 (74-262)||(2786249-2786434)
chr8 (284-322)||(2786477-2786515)
chr8 (74-143)||(39970100-39970170)
chr8 (74-142)||(16893816-16893885)
chr8 (75-143)||(19700844-19700913)
[»] chr3 (5 HSPs)
chr3 (74-143)||(16776721-16776792)
chr3 (192-262)||(37811012-37811083)
chr3 (74-139)||(13702695-13702761)
chr3 (86-143)||(16776582-16776640)
chr3 (74-143)||(29383146-29383216)
[»] chr2 (4 HSPs)
chr2 (74-143)||(11083521-11083591)
chr2 (74-143)||(12969643-12969713)
chr2 (215-262)||(29139518-29139564)
chr2 (74-121)||(8056089-8056137)
[»] chr1 (3 HSPs)
chr1 (74-143)||(18114307-18114377)
chr1 (74-143)||(26768517-26768586)
chr1 (74-143)||(1427331-1427400)
[»] scaffold0074 (1 HSPs)
scaffold0074 (74-128)||(56056-56111)
[»] chr6 (2 HSPs)
chr6 (74-143)||(8646040-8646110)
chr6 (194-262)||(16119600-16119669)
[»] chr5 (3 HSPs)
chr5 (74-143)||(37700225-37700295)
chr5 (74-143)||(3160362-3160432)
chr5 (74-144)||(35495105-35495174)
[»] chr7 (4 HSPs)
chr7 (194-262)||(39413477-39413546)
chr7 (74-143)||(28017075-28017145)
chr7 (83-143)||(31137239-31137300)
chr7 (211-262)||(43310985-43311037)
[»] scaffold0072 (1 HSPs)
scaffold0072 (74-128)||(47287-47342)
[»] chr4 (1 HSPs)
chr4 (74-143)||(22130342-22130412)


Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 74 - 262
Target Start/End: Original strand, 2786249 - 2786434
Alignment:
Q  74 cttcaatcagcattaaatactatattgaaaaatacagtaaccctctctcttaaaggacaaatttgtaaaatagaccgaagtggaccctatcgaatagttc 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  2786249 cttcaatcagcattaaatactatattgaaaaatacagtaaccctctttcttaaaagacaaatttgtaaaatagaccaaagtggaccctatcgaatagttc 2786348  T
Q  174 ctactatcatcataatcaaagagaaattttaagatagacaaaaacacaaatccaaatcattaagcgcacacacaacaatacatattaac 262  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  2786349 ctactatcatcataatcaaagagaaattctaagatagacaaaaacacaaatccaaatcattaag---acacacaacaatacatattaac 2786434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 284 - 322
Target Start/End: Original strand, 2786477 - 2786515
Alignment:
Q  284 atacatatttctgtttgtaccaataatatttgtggttgt 322  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2786477 atacatatttctgtttgtaccaataatatttgtggttgt 2786515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 39970100 - 39970170
Alignment:
Q  74 cttcaatcagcattaaatactatattgaaaa-atacagtaaccctctctcttaaaggacaaatttgtaaaa 143  Q
    |||||||||||| |||||| ||||||||||| ||||| ||||||||||| |||||||| | | ||||||||    
T  39970100 cttcaatcagcagtaaatattatattgaaaacatacactaaccctctcttttaaaggatacaattgtaaaa 39970170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 16893816 - 16893885
Alignment:
Q  74 cttcaatcagcattaaatactatattgaaaa-atacagtaaccctctctcttaaaggacaaatttgtaaa 142  Q
    ||||||||| ||||||||||||| ||||||| ||||| ||||  ||||||||||| || ||| |||||||    
T  16893816 cttcaatcaacattaaatactatgttgaaaacatacactaactttctctcttaaaagataaaattgtaaa 16893885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 143
Target Start/End: Complemental strand, 19700913 - 19700844
Alignment:
Q  75 ttcaatcagcattaaatactatattgaaaa-atacagtaaccctctctcttaaaggacaaatttgtaaaa 143  Q
    |||||||| ||||||||| ||| || |||| ||||| ||||||| |||||||||||| ||| ||||||||    
T  19700913 ttcaatcaacattaaatattatgttcaaaacatacactaaccctttctcttaaaggataaaattgtaaaa 19700844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 16776792 - 16776721
Alignment:
Q  74 cttcaatcagcattaaatactatattgaaaa-atacagtaaccctctctctt-aaaggacaaatttgtaaaa 143  Q
    |||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||    
T  16776792 cttcaatcagcattaaatactacattgaaaacatacactaaccctctctcttaaaaggacaaatttgtaaaa 16776721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 262
Target Start/End: Original strand, 37811012 - 37811083
Alignment:
Q  192 aagagaaattttaagatagacaaaaacacaaatccaaatca-ttaagcgcacacacaacaatacatattaac 262  Q
    |||||||||| ||||||||||| ||||||||||| |||||| ||| || |||||||||||||||| ||||||    
T  37811012 aagagaaattctaagatagacacaaacacaaatctaaatcatttaggcacacacacaacaatacacattaac 37811083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 139
Target Start/End: Complemental strand, 13702761 - 13702695
Alignment:
Q  74 cttcaatcagcattaaatactatattgaaaa-atacagtaaccctctctcttaaaggacaaatttgt 139  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||| ||||||||||||| ||| ||||    
T  13702761 cttcaatcagcattaaatactatgttgaaaacatacactaaccccctctcttaaaggataaaattgt 13702695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 16776640 - 16776582
Alignment:
Q  86 ttaaatactatattgaaaa-atacagtaaccctctctcttaaaggacaaatttgtaaaa 143  Q
    |||||||||| |||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  16776640 ttaaatactacattgaaaacatacactaaccccctctcttaaaggacaaatttgtaaaa 16776582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 29383146 - 29383216
Alignment:
Q  74 cttcaatcagcattaaatactatattgaaaa-atacagtaaccctctctcttaaaggacaaatttgtaaaa 143  Q
    |||||||||  |||||||||||||||||||| ||| | |||| ||||||||| ||||| ||| ||||||||    
T  29383146 cttcaatcaatattaaatactatattgaaaacataaactaactctctctcttcaaggataaaattgtaaaa 29383216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 11083591 - 11083521
Alignment:
Q  74 cttcaatcagcattaaatactatattgaaaa-atacagtaaccctctctcttaaaggacaaatttgtaaaa 143  Q
    |||||||||||||||||||||||  |||||| ||||| |||||||||||||||||||| ||| ||||||||    
T  11083591 cttcaatcagcattaaatactatgctgaaaatatacattaaccctctctcttaaaggataaaattgtaaaa 11083521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 12969643 - 12969713
Alignment:
Q  74 cttcaatcagcattaaatactatattgaaaa-atacagtaaccctctctcttaaaggacaaatttgtaaaa 143  Q
    |||||||||||||||||||||  |||||||| |||||  ||| |||||||||||||||||||||| |||||    
T  12969643 cttcaatcagcattaaatactgcattgaaaatatacaccaactctctctcttaaaggacaaatttataaaa 12969713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 29139564 - 29139518
Alignment:
Q  215 aaacacaaatccaaatcattaagcgcacacacaacaatacatattaac 262  Q
    |||||||||||||||||||| || ||||||||||||||||| ||||||    
T  29139564 aaacacaaatccaaatcatttag-gcacacacaacaatacacattaac 29139518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 121
Target Start/End: Original strand, 8056089 - 8056137
Alignment:
Q  74 cttcaatcagcattaaatactatattgaaaa-atacagtaaccctctct 121  Q
    ||||||||||||||||||| ||| ||||||| ||||| |||||||||||    
T  8056089 cttcaatcagcattaaatattatgttgaaaatatacactaaccctctct 8056137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 18114377 - 18114307
Alignment:
Q  74 cttcaatcagcattaaatactatattgaaaa-atacagtaaccctctctcttaaaggacaaatttgtaaaa 143  Q
    ||||||||||||||||||| ||||||||||| ||| | |||||||||||||||||||| ||| ||||||||    
T  18114377 cttcaatcagcattaaatattatattgaaaacatatattaaccctctctcttaaaggataaaattgtaaaa 18114307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 26768517 - 26768586
Alignment:
Q  74 cttcaatcagcattaaatactatattgaaaaatacagtaaccctctctcttaaaggacaaatttgtaaaa 143  Q
    ||||||||| ||||||||||||| |||||| ||||| ||||  |||||||||||||  ||| ||||||||    
T  26768517 cttcaatcaacattaaatactatgttgaaacatacactaactttctctcttaaaggttaaaattgtaaaa 26768586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 1427331 - 1427400
Alignment:
Q  74 cttcaatcagcattaaatactatattgaaaa-atacagtaaccctctctcttaaaggacaaatttgtaaaa 143  Q
    ||||||||| ||||||||||||||||||||| ||| | |||| ||||||||| ||||| ||| ||||||||    
T  1427331 cttcaatcaacattaaatactatattgaaaacataaattaactctctctctt-aaggataaaattgtaaaa 1427400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 56056 - 56111
Alignment:
Q  74 cttcaatcagcattaaatactatattgaaaa-atacagtaaccctctctcttaaag 128  Q
    |||||| |||||||||||||||||||||||| ||||| |||||| |||||||||||    
T  56056 cttcaaccagcattaaatactatattgaaaacatacactaacccactctcttaaag 56111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 8646110 - 8646040
Alignment:
Q  74 cttcaatcagcattaaatactatattgaaaa-atacagtaaccctctctcttaaaggacaaatttgtaaaa 143  Q
    ||||||||| ||||||| | ||||||||||| ||||| |||| |||| |||||||| ||||||||||||||    
T  8646110 cttcaatcaacattaaacattatattgaaaacatacactaactctctttcttaaagaacaaatttgtaaaa 8646040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 16119600 - 16119669
Alignment:
Q  194 gagaaattttaagatagacaaaaacacaaatccaaatcattaagcg-cacacacaacaatacatattaac 262  Q
    |||||||| ||||||| ||| |||||||||| ||||||||| |||  || |||||| |||||||||||||    
T  16119600 gagaaattctaagatatacacaaacacaaattcaaatcatttagccacatacacaataatacatattaac 16119669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 37700225 - 37700295
Alignment:
Q  74 cttcaatcagcattaaatactatattgaaaa-atacagtaaccctctctcttaaaggacaaatttgtaaaa 143  Q
    ||||||||||||||||||||||||||||||| ||| | |||   |||||||||||||| ||| ||||||||    
T  37700225 cttcaatcagcattaaatactatattgaaaacatatactaattttctctcttaaaggataaaattgtaaaa 37700295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 3160432 - 3160362
Alignment:
Q  74 cttcaatcagcattaaatactatattgaaaa-atacagtaaccctctctcttaaaggacaaatttgtaaaa 143  Q
    ||||||||| || |||||| ||| ||||||| ||| | ||||| |||||||||||||| ||||||||||||    
T  3160432 cttcaatcaacaataaatagtatgttgaaaacataaactaaccatctctcttaaaggataaatttgtaaaa 3160362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 35495174 - 35495105
Alignment:
Q  74 cttcaatcagcattaaatactatattgaaaa-atacagtaaccctctctcttaaaggacaaatttgtaaaat 144  Q
    ||||||||| ||||||||||||| ||||||| ||||| ||  ||| |||||||||||| ||| |||||||||    
T  35495174 cttcaatcaacattaaatactattttgaaaatatacatta--cctttctcttaaaggataaaattgtaaaat 35495105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 39413546 - 39413477
Alignment:
Q  194 gagaaattttaagatagacaaaaacacaaatccaaatca-ttaagcgcacacacaacaatacatattaac 262  Q
    |||||||| | | ||||||| |||||||||||||||||| ||| || |||||||||||||||| ||||||    
T  39413546 gagaaattcttaaatagacacaaacacaaatccaaatcatttaggcacacacacaacaatacacattaac 39413477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 28017075 - 28017145
Alignment:
Q  74 cttcaatcagcattaaatactatattgaaaa-atacagtaaccctctctcttaaaggacaaatttgtaaaa 143  Q
    ||||||||| ||||||||| ||||||||||| ||||| ||||||||| |||||| ||| ||| || |||||    
T  28017075 cttcaatcaacattaaatattatattgaaaacatacattaaccctctttcttaacggataaaattataaaa 28017145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 31137300 - 31137239
Alignment:
Q  83 gcattaaatactatattgaaaa-atacagtaaccctctctcttaaaggacaaatttgtaaaa 143  Q
    ||||||| |||||| ||||||| |||||  ||||||||||||||||||| ||| ||||||||    
T  31137300 gcattaagtactatgttgaaaacatacaccaaccctctctcttaaaggataaaattgtaaaa 31137239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 43311037 - 43310985
Alignment:
Q  211 acaaaaacacaaatccaaatcatta-agcgcacacacaacaatacatattaac 262  Q
    |||||||| ||||||||||||||||  || |||||||||||||||| ||||||    
T  43311037 acaaaaacccaaatccaaatcattatggcacacacacaacaatacacattaac 43310985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 47287 - 47342
Alignment:
Q  74 cttcaatcagcattaaatactatattgaaaa-atacagtaaccctctctcttaaag 128  Q
    |||||| |||||||||||||||||||||||| ||||| |||| | |||||||||||    
T  47287 cttcaaccagcattaaatactatattgaaaacatacactaactcactctcttaaag 47342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 22130412 - 22130342
Alignment:
Q  74 cttcaatcagcattaaatactatattgaaaa-atacagtaaccctctctcttaaaggacaaatttgtaaaa 143  Q
    ||||||||| ||||||||||||| ||||||| ||||| ||| |||||||||| || || ||| ||||||||    
T  22130412 cttcaatcaacattaaatactatgttgaaaacatacaataatcctctctcttcaaagataaaattgtaaaa 22130342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University