View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5377-Insertion-3 (Length: 732)
Name: NF5377-Insertion-3
Description: NF5377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5377-Insertion-3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 641; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 8 - 732
Target Start/End: Complemental strand, 41917652 - 41916930
Alignment:
| Q |
8 |
ccaacgagcttgaataagcccaatttcaggattatgcaccataaatggtacggtacgccacaaaaaatcaggctctggttgaaaatcagcatcaaatatt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41917652 |
ccaacgagcttgaataagcccaatttcaggattatgcaccataaatggtacggtacgccacaaaaaatcaggctctggttgaaaatcagcatcaaatatt |
41917553 |
T |
|
| Q |
108 |
gcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgtatccatttctattgtccctaacttcgtactttatat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41917552 |
gcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgtatccatttctattgtccctaacttcatactttatat |
41917453 |
T |
|
| Q |
208 |
tcactcctttgcttgcccatctttggcattctagttgcaccaactcctacannnnnnnnnngtcaccataaaattaatgttaatcaatatcacatgatcg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41917452 |
tcactcctttgcttgcccatctttggcattctagttgcaccaactcctacatttttttt--gtcaccataaaattaatgttaatcaatatcacatgatcg |
41917355 |
T |
|
| Q |
308 |
atgnnnnnnnaaaactagacttttttcttgttagggtaaaactaataaaacattgattttgctccgaagggtttgaaaggtacgtgactacgatctgagc |
407 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
41917354 |
atgtttttttaaaactagacttttttcttgttagggtaaaactaataaaacattgattttgttccgaagggtttgaaaggtacgtgactacgatctgagc |
41917255 |
T |
|
| Q |
408 |
tgtgacatcaatgttttttaggttatgcgagtttgtgactaaaagacatcgcaattgagtcgatataaattgtaaatgattatgatatttttgcaatatt |
507 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41917254 |
tgtgacatcaatgtattttaggttatgtgagtttgtgactaaaagacatcgcaattgagtcgatataaattgtaaatgattatgatatttttgcaatatt |
41917155 |
T |
|
| Q |
508 |
aagaatcgcgacgtagagtgaattaaaaatcttggatttaataatttaaattcagtggttaccttgattgttgggtcagtggagtcatcaagaacttgta |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41917154 |
aagaatcgcgacgtagagtgaattaaaaatcttggatttaataatttaaattcagtggttaccttgattgttgggtcagtggagtcatcaagaacttgta |
41917055 |
T |
|
| Q |
608 |
taatgattctatcagaaggccatgaaagaccacatgcagctccaattgacaattgataaacctacatacatacattaaaagaaaactcaatatcaagcct |
707 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41917054 |
taatgatcctatcagaaggccatgaaagaccacatgcagctccaattgacaattgataaacctacatacatacattaaaagaaaactcaatatcaagctt |
41916955 |
T |
|
| Q |
708 |
taagaaaagtgctcaactactatgc |
732 |
Q |
| |
|
||| ||||||||||||||||||||| |
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|
| T |
41916954 |
taaaaaaagtgctcaactactatgc |
41916930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 2e-54; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 71 - 255
Target Start/End: Original strand, 26832641 - 26832825
Alignment:
| Q |
71 |
aaaatcaggctctggttgaaaatcagcatcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttg |
170 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || ||||||| ||||||||| |||||||||||||| |||||||| || ||||| || ||||||||| |
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| T |
26832641 |
aaaatcaggttctggttgaaaatcagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttg |
26832740 |
T |
|
| Q |
171 |
tatccatttctattgtccctaacttcgtactttatattcactcctttgcttgcccatctttggcattctagttgcaccaactcct |
255 |
Q |
| |
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|| ||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| ||||||||| ||| |||||||||| |
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| T |
26832741 |
taaccatttctattgtccctaacttcatactttatattcacacctttgcttctccatctacggcattctacttgtaccaactcct |
26832825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 567 - 670
Target Start/End: Original strand, 26823320 - 26823423
Alignment:
| Q |
567 |
taccttgattgttgggtcagtggagtcatcaagaacttgtataatgattctatcagaaggccatgaaagaccacatgcagctccaattgacaattgataa |
666 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||| || || |||||||||| |||||||| || |||||| |
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|
| T |
26823320 |
taccttgattgttgggtcagtggaatcatcaagaatttgtatgatgattctatcagaaggccaagagagttcacatgcagcaccaattgataactgataa |
26823419 |
T |
|
| Q |
667 |
acct |
670 |
Q |
| |
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|||| |
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|
| T |
26823420 |
acct |
26823423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 567 - 674
Target Start/End: Original strand, 26786447 - 26786554
Alignment:
| Q |
567 |
taccttgattgttgggtcagtggagtcatcaagaacttgtataatgattctatcagaaggccatgaaagaccacatgcagctccaattgacaattgataa |
666 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| |||||| |||||||||||||||||||| || || |||||||||| |||||||| | |||||| |
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| T |
26786447 |
taccttgattgttgggtcagttgaatcatcaagaatttgtatgatgattctatcagaaggccaagagagttcacatgcagcaccaattgatagctgataa |
26786546 |
T |
|
| Q |
667 |
acctacat |
674 |
Q |
| |
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|||||||| |
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| T |
26786547 |
acctacat |
26786554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 71 - 239
Target Start/End: Original strand, 26791663 - 26791831
Alignment:
| Q |
71 |
aaaatcaggctctggttgaaaatcagcatcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttg |
170 |
Q |
| |
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||||||||| || |||||||||||||||||||| || ||||||| |||||||| |||| ||||| |||||||| || |||| ||| || |||||| |
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| T |
26791663 |
aaaatcaggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttg |
26791762 |
T |
|
| Q |
171 |
tatccatttctattgtccctaacttcgtactttatattcactcctttgcttgcccatctttggcattct |
239 |
Q |
| |
|
|| |||||||| |||||||||||||| |||||||| ||||| |||||| || |||||| |||||||| |
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|
| T |
26791763 |
tacccatttctgttgtccctaacttcatactttatgttcacacctttgtttcgccatctacggcattct |
26791831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 72 - 239
Target Start/End: Original strand, 26785924 - 26786091
Alignment:
| Q |
72 |
aaatcaggctctggttgaaaatcagcatcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgt |
171 |
Q |
| |
|
|||||||| || |||||||||||||||||||| || ||||||| |||||||| |||| ||||| |||||||| || |||| ||| || ||||||| |
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| T |
26785924 |
aaatcaggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgt |
26786023 |
T |
|
| Q |
172 |
atccatttctattgtccctaacttcgtactttatattcactcctttgcttgcccatctttggcattct |
239 |
Q |
| |
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| |||||||| |||||||||||||| |||||||| ||||| |||||| || |||||| |||||||| |
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| T |
26786024 |
acccatttctgttgtccctaacttcatactttatgttcacacctttgtttcgccatctacggcattct |
26786091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 567 - 670
Target Start/End: Original strand, 26799229 - 26799332
Alignment:
| Q |
567 |
taccttgattgttgggtcagtggagtcatcaagaacttgtataatgattctatcagaaggccatgaaagaccacatgcagctccaattgacaattgataa |
666 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||| |||||| |||||||||||||||||||| || || |||||||||| |||||||| | |||||| |
|
|
| T |
26799229 |
taccttgatggttgggtcagtggaatcatcaagaatttgtatgatgattctatcagaaggccaagagagttcacatgcagcaccaattgatagctgataa |
26799328 |
T |
|
| Q |
667 |
acct |
670 |
Q |
| |
|
|||| |
|
|
| T |
26799329 |
acct |
26799332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 26822568 - 26822732
Alignment:
| Q |
75 |
tcaggctctggttgaaaatcagcatcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgtatc |
174 |
Q |
| |
|
||||| || |||||||||||||||||||| || ||||||| |||||||| |||| ||||| |||||||| || |||| ||| || |||||||| | |
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|
| T |
26822568 |
tcaggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacc |
26822667 |
T |
|
| Q |
175 |
catttctattgtccctaacttcgtactttatattcactcctttgcttgcccatctttggcattct |
239 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||| |||||| || |||||| |||||||| |
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|
| T |
26822668 |
catttctgttgtccctaacttcatactttatgttcacacctttgtttcgccatctacggcattct |
26822732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 589 - 673
Target Start/End: Complemental strand, 41546050 - 41545966
Alignment:
| Q |
589 |
gagtcatcaagaacttgtataatgattctatcagaaggccatgaaagaccacatgcagctccaattgacaattgataaacctaca |
673 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| |||||||| | |||||||||||||||||||| |||||||| ||||||| |
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|
| T |
41546050 |
gagtcatcaagaacttgaataataattctatcagatggccatgataacccacatgcagctccaattgataattgatacacctaca |
41545966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 567 - 670
Target Start/End: Original strand, 26833235 - 26833338
Alignment:
| Q |
567 |
taccttgattgttgggtcagtggagtcatcaagaacttgtataatgattctatcagaaggccatgaaagaccacatgcagctccaattgacaattgataa |
666 |
Q |
| |
|
|||||| ||||| || ||||| || |||||||||| |||||| ||||| ||||||||||||||||| || ||||||||||| |||||||| || |||||| |
|
|
| T |
26833235 |
taccttaattgtaggatcagttgaatcatcaagaatttgtatgatgatcctatcagaaggccatgagagtccacatgcagcaccaattgataactgataa |
26833334 |
T |
|
| Q |
667 |
acct |
670 |
Q |
| |
|
|||| |
|
|
| T |
26833335 |
acct |
26833338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 84 - 190
Target Start/End: Complemental strand, 41546352 - 41546246
Alignment:
| Q |
84 |
ggttgaaaatcagcatcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgtatccatttctat |
183 |
Q |
| |
|
|||||||||||||||||||| || ||||||| ||||| | || |||||||||||||||||||||||||| | ||| || |||||||| |||||||||| |
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|
| T |
41546352 |
ggttgaaaatcagcatcaaagatggcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagctttgtaaccatttctat |
41546253 |
T |
|
| Q |
184 |
tgtccct |
190 |
Q |
| |
|
| ||||| |
|
|
| T |
41546252 |
tttccct |
41546246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 89 - 238
Target Start/End: Original strand, 20239135 - 20239284
Alignment:
| Q |
89 |
aaaatcagcatcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgtatccatttctattgtcc |
188 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| ||||| ||||||||| | || | ||||||||| || || ||||||||||||||| ||| | || |
|
|
| T |
20239135 |
aaaatcagcatcaaatatgacaacatattcacaatgcttgacatagctacgttttagtccttctttcaatgcacctgctttgtatccacctcttgtttct |
20239234 |
T |
|
| Q |
189 |
ctaacttcgtactttatattcactcctttgcttgcccatctttggcattc |
238 |
Q |
| |
|
|||| || ||| ||||||| | |||||| |||||||||||||||||||| |
|
|
| T |
20239235 |
ctaatttggtatgttatatttattcctttacttgcccatctttggcattc |
20239284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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