View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5377_low_2 (Length: 569)

Name: NF5377_low_2
Description: NF5377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5377_low_2
NF5377_low_2
[»] chr1 (12 HSPs)
chr1 (158-552)||(6521773-6522161)
chr1 (106-405)||(6506513-6506809)
chr1 (139-423)||(6516855-6517133)
chr1 (134-423)||(6512451-6512734)
chr1 (19-95)||(6506453-6506529)
chr1 (485-550)||(47778093-47778158)
chr1 (298-338)||(47759914-47759954)
chr1 (485-550)||(47788215-47788280)
chr1 (510-549)||(6517220-6517259)
chr1 (493-550)||(6506903-6506960)
chr1 (292-332)||(6499879-6499919)
chr1 (298-338)||(47712999-47713039)
[»] scaffold0341 (6 HSPs)
scaffold0341 (106-405)||(538-834)
scaffold0341 (106-405)||(8191-8487)
scaffold0341 (19-95)||(478-554)
scaffold0341 (19-95)||(8131-8207)
scaffold0341 (493-550)||(928-985)
scaffold0341 (493-550)||(8581-8638)


Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 158 - 552
Target Start/End: Complemental strand, 6522161 - 6521773
Alignment:
Q  158 gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacccattctattgtcacaacaatttgggatttc 257  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||| |||||| |||     |||||| |||||||||||  |||||    
T  6522161 gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-acc-----tattgttacaacaatttgaaatttc 6522068  T
Q  258 tttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattatttggaccaacc 357  Q
    ||||||||||| | ||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6522067 tttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattacttggaccaacc 6521968  T
Q  358 tcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctttatttcttaaactatccnnnnnnnnnttcaccactttgttaaactcaacct 457  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||         |||||||||||||||||||||||||    
T  6521967 tcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaactatccaaaaaaaaattcaccactttgttaaactcaacct 6521868  T
Q  458 catttgttgcgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattct 552  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6521867 catttgttgcgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtaacgcaacatgcattct 6521773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 106 - 405
Target Start/End: Original strand, 6506513 - 6506809
Alignment:
Q  106 ggtgttggtgatggtgatgatgacgacgatgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc 205  Q
    |||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6506513 ggtgttggtgatggtgatgatgacg---atgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc 6506609  T
Q  206 taagaaatctaccacctatacccattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc 305  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6506610 taagaaatctaccacctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc 6506709  T
Q  306 aggtgtgcattgaacaagaccatatatggtttggttattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagct 405  Q
    ||||||||||||||||||| || |||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  6506710 aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagct 6506809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 139 - 423
Target Start/End: Original strand, 6516855 - 6517133
Alignment:
Q  139 gaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacccattctattgt 238  Q
    |||||||||||||||||| ||||||| || ||||||| |||||||||||||||||||||||||||||||| || |||| |||       ||| || ||||    
T  6516855 gaaggtgaatcttgtgttggttgataaaagagtgaatcggtttcatatctcaaataacaactgggtctaacaactctagcact------catcctgttgt 6516948  T
Q  239 cacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagaccatatatggtttg 338  Q
     ||||||  ||| |||||| |||||||||| | ||||||| |||||||| ||||||| | |||||||||||||||||||| | |||||||||||||||||    
T  6516949 tacaacatattgcgatttcattgatagattgaaccaaacaatcatcacaaaatgttttaaacaaatcaggtgtgcattgagctagaccatatatggtttg 6517048  T
Q  339 gttattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctttatttcttaaactatcc 423  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  6517049 attattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatcc 6517133  T

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Target: chr1; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 134 - 423
Target Start/End: Original strand, 6512451 - 6512734
Alignment:
Q  134 atgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacccattct 233  Q
    ||||||| |||| |||| |||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| || |||| ||||      ||  ||    
T  6512451 atgatgagggtggatctggtgtttgttgatagaagagtgaatcggtttcatatctcaaataacaacttggtctaacaattctagcacc------caacct 6512544  T
Q  234 attgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagaccatatatg 333  Q
     |||| ||||||  |||||||| |||||||||||||  ||||||| ||||| ||||||| || |||||||||||||||||||||||||||| |||||||     
T  6512545 gttgttacaacatcttgggattgctttgatagattttaccaaacaatcatcgcacaatgatttagacaaatcaggtgtgcattgaacaagagcatatata 6512644  T
Q  334 gtttggttattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctttatttcttaaactatcc 423  Q
    ||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||| || ||||||| |||| ||||||||||| |||||    
T  6512645 gtttgattattattttgaccaacctcatcacttccaacagcatatttaaggtcactatcacctgatgaagctctatttcttaaattatcc 6512734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 6506453 - 6506529
Alignment:
Q  19 gaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactgatgttggggaaggtgttggtgatggtga 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  6506453 gaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactgatgctggtgaaggtgttggtgatggtga 6506529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 485 - 550
Target Start/End: Complemental strand, 47778158 - 47778093
Alignment:
Q  485 caaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcatt 550  Q
    ||||||| |||||||||||||| ||||| | |||||||||||||| |||||| |||||||||||||    
T  47778158 caaaatatgcaggtccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatt 47778093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 47759914 - 47759954
Alignment:
Q  298 gacaaatcaggtgtgcattgaacaagaccatatatggtttg 338  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  47759914 gacaaatcaggtgtgcactgaacaagaccatatatggtttg 47759954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 485 - 550
Target Start/End: Complemental strand, 47788280 - 47788215
Alignment:
Q  485 caaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcatt 550  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||| ||| || || ||||| ||||    
T  47788280 caaaataagcaggtccaatttcgtttagacccattattgaacggtctgaataacgtaacatacatt 47788215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 549
Target Start/End: Original strand, 6517220 - 6517259
Alignment:
Q  510 gagaccaaatattgaacggtttgagtagcgcaacatgcat 549  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  6517220 gagaccaaatattgaacggcttgagtaacgcaacatgcat 6517259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 550
Target Start/End: Original strand, 6506903 - 6506960
Alignment:
Q  493 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcatt 550  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | |||||||||||||    
T  6506903 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatt 6506960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 6499879 - 6499919
Alignment:
Q  292 gtttcagacaaatcaggtgtgcattgaacaagaccatatat 332  Q
    |||||||||||||||||||| |||||||| | |||||||||    
T  6499879 gtttcagacaaatcaggtgtacattgaaccaaaccatatat 6499919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 47712999 - 47713039
Alignment:
Q  298 gacaaatcaggtgtgcattgaacaagaccatatatggtttg 338  Q
    |||||||||||||| || || ||||||||||||||||||||    
T  47712999 gacaaatcaggtgtacactgcacaagaccatatatggtttg 47713039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 250; Significance: 1e-138; HSPs: 6)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 106 - 405
Target Start/End: Original strand, 538 - 834
Alignment:
Q  106 ggtgttggtgatggtgatgatgacgacgatgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc 205  Q
    |||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  538 ggtgttggtgatggtgatgatgacg---atgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc 634  T
Q  206 taagaaatctaccacctatacccattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc 305  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  635 taagaaatctaccacctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc 734  T
Q  306 aggtgtgcattgaacaagaccatatatggtttggttattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagct 405  Q
    ||||||||||||||||||| || |||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  735 aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagct 834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 106 - 405
Target Start/End: Original strand, 8191 - 8487
Alignment:
Q  106 ggtgttggtgatggtgatgatgacgacgatgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc 205  Q
    |||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8191 ggtgttggtgatggtgatgatgacg---atgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc 8287  T
Q  206 taagaaatctaccacctatacccattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc 305  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8288 taagaaatctaccacctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc 8387  T
Q  306 aggtgtgcattgaacaagaccatatatggtttggttattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagct 405  Q
    ||||||||||||||||||| || |||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  8388 aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagct 8487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 478 - 554
Alignment:
Q  19 gaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactgatgttggggaaggtgttggtgatggtga 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  478 gaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactgatgctggtgaaggtgttggtgatggtga 554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 8131 - 8207
Alignment:
Q  19 gaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactgatgttggggaaggtgttggtgatggtga 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  8131 gaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactgatgctggtgaaggtgttggtgatggtga 8207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 550
Target Start/End: Original strand, 928 - 985
Alignment:
Q  493 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcatt 550  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | |||||||||||||    
T  928 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatt 985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 550
Target Start/End: Original strand, 8581 - 8638
Alignment:
Q  493 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcatt 550  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | |||||||||||||    
T  8581 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatt 8638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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