View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5377_low_3 (Length: 556)

Name: NF5377_low_3
Description: NF5377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5377_low_3
NF5377_low_3
[»] chr1 (5 HSPs)
chr1 (6-541)||(46840517-46841052)
chr1 (440-529)||(15174552-15174641)
chr1 (440-524)||(34548032-34548116)
chr1 (440-530)||(50817224-50817314)
chr1 (440-500)||(41457123-41457183)
[»] chr4 (10 HSPs)
chr4 (457-522)||(23805176-23805241)
chr4 (440-524)||(36653034-36653118)
chr4 (440-522)||(39061008-39061090)
chr4 (457-529)||(5320244-5320316)
chr4 (438-527)||(17402514-17402603)
chr4 (457-500)||(48188438-48188481)
chr4 (440-527)||(51071985-51072072)
chr4 (440-530)||(6355195-6355285)
chr4 (440-524)||(37871998-37872082)
chr4 (460-524)||(48639395-48639459)
[»] chr2 (6 HSPs)
chr2 (457-529)||(36212481-36212553)
chr2 (440-497)||(33036311-33036368)
chr2 (440-529)||(45702532-45702621)
chr2 (457-517)||(23479762-23479822)
chr2 (457-502)||(39529773-39529818)
chr2 (465-497)||(20202379-20202411)
[»] chr6 (6 HSPs)
chr6 (460-529)||(8754283-8754352)
chr6 (440-524)||(12913600-12913684)
chr6 (440-488)||(15161428-15161476)
chr6 (440-488)||(15171433-15171481)
chr6 (440-488)||(15180205-15180253)
chr6 (440-488)||(15471932-15471980)
[»] chr3 (4 HSPs)
chr3 (457-522)||(21080617-21080682)
chr3 (457-522)||(21085206-21085271)
chr3 (460-524)||(15028751-15028815)
chr3 (463-503)||(27482532-27482572)
[»] scaffold0309 (1 HSPs)
scaffold0309 (441-529)||(551-639)
[»] chr5 (6 HSPs)
chr5 (440-530)||(4634816-4634906)
chr5 (440-497)||(11978977-11979034)
chr5 (457-529)||(20427495-20427568)
chr5 (456-533)||(27529693-27529770)
chr5 (440-524)||(478948-479032)
chr5 (458-502)||(15216743-15216787)
[»] chr7 (6 HSPs)
chr7 (440-527)||(38430392-38430479)
chr7 (460-530)||(19322886-19322956)
chr7 (440-497)||(6457760-6457817)
chr7 (440-497)||(9601532-9601589)
chr7 (440-497)||(9829103-9829160)
chr7 (440-524)||(17195274-17195358)
[»] chr8 (6 HSPs)
chr8 (440-530)||(1010749-1010839)
chr8 (476-530)||(1682168-1682222)
chr8 (440-502)||(14005783-14005845)
chr8 (440-497)||(15014286-15014343)
chr8 (440-524)||(13091130-13091214)
chr8 (447-506)||(33178625-33178685)
[»] scaffold0300 (1 HSPs)
scaffold0300 (440-524)||(8192-8276)


Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 6 - 541
Target Start/End: Complemental strand, 46841052 - 46840517
Alignment:
Q  6 caccaacacctctttattttctgctaattcaaataatctcttatacctcacacatagtgtttcatccccaagctacacattggactagaaaaacgttatg 105  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46841052 caccaacacctctttattttctgctaattcaaataatctcctatacctcacacatagtgtttcatccccaagctacacattggaccagaaaaacgttatg 46840953  T
Q  106 gccccatcaccaacgacccgcacaagattatcataaaaccatttgctcatcgccaacccatccctacgtctaatctcatccaattgattccaccaaatta 205  Q
    | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46840952 gtcccatcaccaacgacccgcacaagattatcataaaaccatttggtcatcgccaactcatccctacgtctaatctcatccaattgattccaccaaatta 46840853  T
Q  206 agtctaatttgcccccttctttcaccctacctcttcaattccgtatctagcagacaaaaccttaaaccttaaactatcttgatcgacaactaacctccag 305  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  46840852 agcctaatttgcccccttctttcaccctacctcttcaattccgtatctagcagacaaaaccttaaaccataaactatcttgatcgacaactaacctccaa 46840753  T
Q  306 cactccttaccatacaacgccaaattaagttctctaatcttatgcacctccaaacctccattctctttttctagacaaaccgtatctcaattgttccatt 405  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  46840752 cactccttaccatacaatgccaaattaagttctctaatcttatgcacctccaaacctccattctctttttctagacaaaccgtatctcaattgatccatt 46840653  T
Q  406 gtatttttctaattttctcacacnnnnnnntaaataaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcg 505  Q
    ||||||| ||||||||||| |||       |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46840652 gtattttcctaattttctctcacaaaaaaataaataaataaagattcgaccgaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcg 46840553  T
Q  506 gtaaagaggacatgacagatttcaacaacacaaaat 541  Q
    ||||||||||||||||||||||||||||||||||||    
T  46840552 gtaaagaggacatgacagatttcaacaacacaaaat 46840517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 440 - 529
Target Start/End: Complemental strand, 15174641 - 15174552
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgacagatttca 529  Q
    |||||||||||||||  |||||||| |||| |||||| ||||||||||| || ||||| || | ||||| | | ||||||||| ||||||    
T  15174641 taaataaagattcgatagaagaaattatacctgtgggggccttgaagaaggaaagaaagtaaaccggtagacatgacatgacaaatttca 15174552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 524
Target Start/End: Complemental strand, 34548116 - 34548032
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgacaga 524  Q
    ||||||||||||| |  ||||||||||||| || |||||| |||||||| || ||||| |||| ||| | |||||||| ||||||    
T  34548116 taaataaagattcaatagaagaaatgatacctgcgggagctttgaagaaggaaagaaagtagaccggaagagaggacaagacaga 34548032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 530
Target Start/End: Complemental strand, 50817314 - 50817224
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgacagatttcaa 530  Q
    ||||||||||||||| ||||||||| |||| || ||| ||||||||||| || ||||| || | ||| |  || ||||||||| |||||||    
T  50817314 taaataaagattcgatggaagaaattatacctgcgggggccttgaagaaggaaagaaagtaaaccggaagcgaagacatgacaaatttcaa 50817224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 500
Target Start/End: Original strand, 41457123 - 41457183
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaaata 500  Q
    |||||||||||||||  ||||| ||||||  | ||||| |||||||||| |||||||||||    
T  41457123 taaataaagattcgatagaagatatgatatctatgggaaccttgaagaaggagagaaaata 41457183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 457 - 522
Target Start/End: Complemental strand, 23805241 - 23805176
Alignment:
Q  457 gaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgaca 522  Q
    ||||||||||||||||||| |||||||||||| || |||||||||| ||| |||||||||| ||||    
T  23805241 gaagaaatgatacatgtggaagccttgaagaaggaaagaaaatagaccggaaaagaggacaagaca 23805176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 440 - 524
Target Start/End: Original strand, 36653034 - 36653118
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgacaga 524  Q
    |||||| |||||| | ||||||||||||||||| |||||| |||||||| || ||||| |||||||| | |||||||| ||||||    
T  36653034 taaatatagattcaatggaagaaatgatacatgcgggagctttgaagaaggaaagaaagtagatcggaagagaggacaagacaga 36653118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 440 - 522
Target Start/End: Original strand, 39061008 - 39061090
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgaca 522  Q
    |||||| |||||| | ||||||||||||||||| |||||| |||||||| || ||||| |||||||| | |||||||| ||||    
T  39061008 taaatatagattcaagggaagaaatgatacatgcgggagctttgaagaaggacagaaagtagatcggaagagaggacaagaca 39061090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 457 - 529
Target Start/End: Complemental strand, 5320316 - 5320244
Alignment:
Q  457 gaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgacagatttca 529  Q
    |||||||| ||||||| ||||||||||||||| || ||||| || ||||| | |||||| |||||||||||||    
T  5320316 gaagaaattatacatgcgggagccttgaagaaggaaagaaagtaaatcggaagagaggatatgacagatttca 5320244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 438 - 527
Target Start/End: Complemental strand, 17402603 - 17402514
Alignment:
Q  438 aataaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgacagattt 527  Q
    ||||||||||||||| | ||||||||| |||  || ||| |||||||||||||| |||||||| | ||  | ||| ||||||||||||||    
T  17402603 aataaataaagattctatggaagaaattatatctgggggggccttgaagaaagaaagaaaataaaccgaaacagatgacatgacagattt 17402514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 500
Target Start/End: Original strand, 48188438 - 48188481
Alignment:
Q  457 gaagaaatgatacatgtgggagccttgaagaaagagagaaaata 500  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||||    
T  48188438 gaagaaatgatacatgtggaagctttgaagaaagaaagaaaata 48188481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 527
Target Start/End: Complemental strand, 51072072 - 51071985
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgacagattt 527  Q
    ||||||||||||| | ||||||||| |||| |||||| ||||||||||| || ||||| || | ||||| ||| | || |||||||||    
T  51072072 taaataaagattctatggaagaaattatacctgtgggggccttgaagaaggaaagaaagtaaaccggtagagatgtcaggacagattt 51071985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 530
Target Start/End: Complemental strand, 6355285 - 6355195
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgacagatttcaa 530  Q
    ||||||||||||| |  ||||| ||||||||||  ||||||||||||||  | |||||||||| ||| | ||| |||| |||||| |||||    
T  6355285 taaataaagattcaatagaagagatgatacatgcaggagccttgaagaacaaaagaaaatagaccggaagagaagacaagacagacttcaa 6355195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 524
Target Start/End: Original strand, 37871998 - 37872082
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgacaga 524  Q
    ||||||||||||| |  ||||||||||||| || |||||| |||||||| || ||||| |||| ||| | ||| |||| ||||||    
T  37871998 taaataaagattcaatagaagaaatgatacctgcgggagctttgaagaaggaaagaaagtagaccggaagagatgacaagacaga 37872082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 524
Target Start/End: Complemental strand, 48639459 - 48639395
Alignment:
Q  460 gaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgacaga 524  Q
    ||||||||||||| |||||| |||||||| || ||||| |||| ||| | |||||||| ||||||    
T  48639459 gaaatgatacatgcgggagctttgaagaaggaaagaaagtagaccggaagagaggacaagacaga 48639395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 457 - 529
Target Start/End: Complemental strand, 36212553 - 36212481
Alignment:
Q  457 gaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgacagatttca 529  Q
    |||||||||||||||  | |||||||||||||||| |||||||||||||  | ||||||||||||||| ||||    
T  36212553 gaagaaatgatacatacgagagccttgaagaaagaaagaaaatagatcgaaagagaggacatgacagacttca 36212481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 440 - 497
Target Start/End: Original strand, 33036311 - 33036368
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaa 497  Q
    ||||||||||||||| ||||||||| |||| |||||| ||||||||||| || |||||    
T  33036311 taaataaagattcgatggaagaaattatacctgtgggggccttgaagaaggaaagaaa 33036368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 440 - 529
Target Start/End: Original strand, 45702532 - 45702621
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgacagatttca 529  Q
    |||||||||||||||  || ||||| |||| ||| |||||||||||||| || ||||| || | ||| | ||||||||||||||| ||||    
T  45702532 taaataaagattcgatagaggaaattatacctgtaggagccttgaagaaggaaagaaagtaaaccggaagagaggacatgacagacttca 45702621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 517
Target Start/End: Complemental strand, 23479822 - 23479762
Alignment:
Q  457 gaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggaca 517  Q
    ||||||||||||||||  |||||||||||||| || ||||||||||| || | ||||||||    
T  23479822 gaagaaatgatacatgcaggagccttgaagaaggaaagaaaatagattgggagagaggaca 23479762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 502
Target Start/End: Original strand, 39529773 - 39529818
Alignment:
Q  457 gaagaaatgatacatgtgggagccttgaagaaagagagaaaataga 502  Q
    |||||| ||||||||||||||||||||||||| || ||||| ||||    
T  39529773 gaagaagtgatacatgtgggagccttgaagaaggaaagaaagtaga 39529818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 497
Target Start/End: Original strand, 20202379 - 20202411
Alignment:
Q  465 gatacatgtgggagccttgaagaaagagagaaa 497  Q
    |||||||||||||||||||||||| ||||||||    
T  20202379 gatacatgtgggagccttgaagaatgagagaaa 20202411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 460 - 529
Target Start/End: Original strand, 8754283 - 8754352
Alignment:
Q  460 gaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgacagatttca 529  Q
    |||||||||| || |||||||||||||||||| |||||||||| ||| | |||||||| |||||| ||||    
T  8754283 gaaatgatacctgcgggagccttgaagaaagaaagaaaatagaccggaagagaggacaagacagacttca 8754352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 524
Target Start/End: Original strand, 12913600 - 12913684
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgacaga 524  Q
    ||||||||||||| |  ||||||||||||| || |||||| |||||||| || ||||| |||| ||| | |||||||| ||||||    
T  12913600 taaataaagattcaatagaagaaatgatacctgcgggagctttgaagaaggaaagaaagtagaccggaagagaggacaagacaga 12913684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 15161428 - 15161476
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaa 488  Q
    ||||||| |||||||  |||||||| ||||||||||||| |||||||||    
T  15161428 taaataatgattcgatagaagaaattatacatgtgggagacttgaagaa 15161476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 15171433 - 15171481
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaa 488  Q
    ||||||| |||||||  |||||||| ||||||||||| |||||||||||    
T  15171433 taaataatgattcgatagaagaaattatacatgtgggggccttgaagaa 15171481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 15180205 - 15180253
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaa 488  Q
    ||||||| |||||||  |||||||| ||||||||||| |||||||||||    
T  15180205 taaataatgattcgatagaagaaattatacatgtgggggccttgaagaa 15180253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 15471980 - 15471932
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaa 488  Q
    ||||||| |||||||  |||||||| ||||||||||| |||||||||||    
T  15471980 taaataatgattcgatagaagaaattatacatgtgggggccttgaagaa 15471932  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 457 - 522
Target Start/End: Complemental strand, 21080682 - 21080617
Alignment:
Q  457 gaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgaca 522  Q
    |||||||| |||||||  |||||||||||||| || |||||||||| |||||||||||||| ||||    
T  21080682 gaagaaatcatacatgcaggagccttgaagaaggaaagaaaatagaccggtaaagaggacaagaca 21080617  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 457 - 522
Target Start/End: Complemental strand, 21085271 - 21085206
Alignment:
Q  457 gaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgaca 522  Q
    |||||||| |||||||  |||||||||||||| || |||||||||| |||||||||||||| ||||    
T  21085271 gaagaaataatacatgcaggagccttgaagaaggaaagaaaatagaccggtaaagaggacaagaca 21085206  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 524
Target Start/End: Complemental strand, 15028815 - 15028751
Alignment:
Q  460 gaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgacaga 524  Q
    ||||||||||||| |||||| |||||||| || ||||| |||| ||| | |||||||| ||||||    
T  15028815 gaaatgatacatgcgggagctttgaagaaggaaagaaagtagaccggaagagaggacaagacaga 15028751  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 463 - 503
Target Start/End: Complemental strand, 27482572 - 27482532
Alignment:
Q  463 atgatacatgtgggagccttgaagaaagagagaaaatagat 503  Q
    ||||||||||||| ||||| |||||| ||||||||||||||    
T  27482572 atgatacatgtggaagcctcgaagaaggagagaaaatagat 27482532  T

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Target: scaffold0309 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 529
Target Start/End: Complemental strand, 639 - 551
Alignment:
Q  441 aaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgacagatttca 529  Q
    |||||||||||||| ||| ||||| |||| |||||| ||||||||||| || ||||| || | ||||| ||| |||| |||||||||||    
T  639 aaataaagattcgatggatgaaattatacctgtgggggccttgaagaaggaaagaaagtaaaccggtagagatgacaggacagatttca 551  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 530
Target Start/End: Complemental strand, 4634906 - 4634816
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgacagatttcaa 530  Q
    ||||||||||||| | ||||||||| ||| |||| || ||||||||||| || ||||| || ||||| | ||| ||||||||| |||||||    
T  4634906 taaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaatcggaatagatgacatgacaaatttcaa 4634816  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 497
Target Start/End: Complemental strand, 11979034 - 11978977
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaa 497  Q
    |||||||||||||||  |||||||| ||||||||||| ||| ||||||| || |||||    
T  11979034 taaataaagattcgatagaagaaattatacatgtgggtgccatgaagaaggaaagaaa 11978977  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 529
Target Start/End: Complemental strand, 20427568 - 20427495
Alignment:
Q  457 gaagaaatgatacatgtggg-agccttgaagaaagagagaaaatagatcggtaaagaggacatgacagatttca 529  Q
    |||||||| ||||||| ||| |||||||||||| || ||||| || ||||| | ||||||||||||| ||||||    
T  20427568 gaagaaattatacatgcggggagccttgaagaaggaaagaaagtaaatcggaagagaggacatgacatatttca 20427495  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 533
Target Start/End: Original strand, 27529693 - 27529770
Alignment:
Q  456 ggaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgacagatttcaacaa 533  Q
    ||||||||| |||||||||||||||||||| |  || ||||| || ||||| | ||| |||| |||| ||||||||||    
T  27529693 ggaagaaattatacatgtgggagccttgaaaacggaaagaaagtaaatcggaagagaagacaagacatatttcaacaa 27529770  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 524
Target Start/End: Original strand, 478948 - 479032
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgacaga 524  Q
    ||||||||||||| | || |||||| |||| || ||| || |||||||| || |||||||||| ||| |  ||||||||||||||    
T  478948 taaataaagattcaagggtagaaattatacctgagggggctttgaagaaggaaagaaaatagaccggaatggaggacatgacaga 479032  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 502
Target Start/End: Complemental strand, 15216787 - 15216743
Alignment:
Q  458 aagaaatgatacatgtgggagccttgaagaaagagagaaaataga 502  Q
    |||| ||||||||||||||||||||||||||  | ||||||||||    
T  15216787 aagagatgatacatgtgggagccttgaagaagaaaagaaaataga 15216743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 527
Target Start/End: Complemental strand, 38430479 - 38430392
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgacagattt 527  Q
    |||||| ||||||||  |||||||| |||| |||||| ||||||||||| || ||||| || | ||| | |||||||| |||||||||    
T  38430479 taaatagagattcgatagaagaaattatacctgtgggggccttgaagaaggaaagaaagtaaaccggaacagaggacaagacagattt 38430392  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 530
Target Start/End: Complemental strand, 19322956 - 19322886
Alignment:
Q  460 gaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgacagatttcaa 530  Q
    ||||||||||||| |||||| |||||||| || ||||| |||| ||| | |||||||| |||||| |||||    
T  19322956 gaaatgatacatgcgggagctttgaagaaggaaagaaagtagaccggaagagaggacaagacagacttcaa 19322886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 497
Target Start/End: Complemental strand, 6457817 - 6457760
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaa 497  Q
    |||||||||||||||  || ||||| |||||||| || |||||||||||||| |||||    
T  6457817 taaataaagattcgatagaggaaattatacatgtaggtgccttgaagaaagaaagaaa 6457760  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 497
Target Start/End: Original strand, 9601532 - 9601589
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaa 497  Q
    ||||||||||||||| ||||||||| |||| ||| || ||||||||||| || |||||    
T  9601532 taaataaagattcgatggaagaaattatacctgtaggggccttgaagaaggaaagaaa 9601589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 497
Target Start/End: Original strand, 9829103 - 9829160
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaa 497  Q
    ||||||||||||||| ||||||||| |||| ||| || ||||||||||| || |||||    
T  9829103 taaataaagattcgatggaagaaattatacctgtaggggccttgaagaaggaaagaaa 9829160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 524
Target Start/End: Original strand, 17195274 - 17195358
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgacaga 524  Q
    ||||||||||||| |  ||||||||||||| ||  ||||| |||||||| || ||||| |||| ||| | |||||||| ||||||    
T  17195274 taaataaagattcaatagaagaaatgatacctgcaggagctttgaagaaggaaagaaagtagaccggaagagaggacaagacaga 17195358  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 530
Target Start/End: Original strand, 1010749 - 1010839
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgacagatttcaa 530  Q
    |||||||||||||||  |||||||| |||  || ||| ||||||||||| || ||||| || | ||| | ||| |||||||||||||||||    
T  1010749 taaataaagattcgatagaagaaattatatttgcgggggccttgaagaaggaaagaaagtaaaccggaagagatgacatgacagatttcaa 1010839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 476 - 530
Target Start/End: Complemental strand, 1682222 - 1682168
Alignment:
Q  476 gagccttgaagaaagagagaaaatagatcggtaaagaggacatgacagatttcaa 530  Q
    ||||||||||||| || ||||| || ||||| | |||||||||||||||||||||    
T  1682222 gagccttgaagaaggaaagaaagtaaatcggcagagaggacatgacagatttcaa 1682168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 502
Target Start/End: Complemental strand, 14005845 - 14005783
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaaataga 502  Q
    |||||||||||||||  || |||||||||| |||| |||| |||||||| || ||||||||||    
T  14005845 taaataaagattcgatagaggaaatgatacttgtgagagctttgaagaaggaaagaaaataga 14005783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 497
Target Start/End: Original strand, 15014286 - 15014343
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaa 497  Q
    ||||||||||||  | ||||||||| |||||||||| |||||||||||| || |||||    
T  15014286 taaataaagattgaatggaagaaattatacatgtggcagccttgaagaaggaaagaaa 15014343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 524
Target Start/End: Original strand, 13091130 - 13091214
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgacaga 524  Q
    ||||||||||||| |  ||||||||||||| || | |||| |||||||| || ||||| |||| ||| | |||||||| ||||||    
T  13091130 taaataaagattcaatagaagaaatgatacgtgcgagagctttgaagaaggaaagaaagtagaccggaagagaggacaagacaga 13091214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 506
Target Start/End: Original strand, 33178625 - 33178685
Alignment:
Q  447 agattcgacggaagaaatgatacatgtgg-gagccttgaagaaagagagaaaatagatcgg 506  Q
    |||||| | ||||||||||||||||| || | |||||||||||||| ||||| ||||||||    
T  33178625 agattcaagggaagaaatgatacatgaggagggccttgaagaaagaaagaaagtagatcgg 33178685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 524
Target Start/End: Complemental strand, 8276 - 8192
Alignment:
Q  440 taaataaagattcgacggaagaaatgatacatgtgggagccttgaagaaagagagaaaatagatcggtaaagaggacatgacaga 524  Q
    |||||| |||||| | ||||||||||||||||| | |||| |||||||| || ||||| ||||  || | |||||||| ||||||    
T  8276 taaatatagattcaatggaagaaatgatacatgcgagagcgttgaagaaggaaagaaagtagactggaagagaggacaagacaga 8192  T

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