View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5378-Insertion-2 (Length: 720)
Name: NF5378-Insertion-2
Description: NF5378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5378-Insertion-2 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 544; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 7 - 720
Target Start/End: Complemental strand, 51149999 - 51149280
Alignment:
| Q |
7 |
aatacattcatctatccttctaaaataataatacacccaactcgttaagcttgattta--------------tttatgttaaaatttacattttcttggt |
92 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
51149999 |
aatacattcatctatcattctaaaataata---cacccaactcgttaagcttgatttacacttgtctatttatttatgttaaaatttacattttcttggt |
51149903 |
T |
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| Q |
93 |
taagaagtaaatataaagtaattgttactcctcttcctttgaattgaagcgctaccagagtttgcgtttttaagtttcttcgacaaggaa-----gaact |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51149902 |
taagaagtaaatataaagtaattgttactcctcttcctttgaattgaagcgctaccagagtttgcgtttttaagtttcttcgacaaggaaaggaagaact |
51149803 |
T |
|
| Q |
188 |
cgcacaactaattcatttaatgtaagttccatattggctctccatttctaacacaagctcaacggttatgtaacaggttctacatacttaaattttattc |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
51149802 |
cgcacaactaattcatttaatgtaagttccatattggctctccatttctaacacaagctcaacggttatgtaacaggttctacatactgaaattttattc |
51149703 |
T |
|
| Q |
288 |
ttatacttgatatcatacacaacacaacactacaattattaattaacaacccacatactcatgagtcataactcaactcatcattgttcgttcatgatcc |
387 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51149702 |
ttatacttgatatcatacaca-----acactacaattattaattaacaaccctcatactcatgagtcataactcaactcatcattgttcgttcatgatcc |
51149608 |
T |
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| Q |
388 |
tatcactacnnnnnnnnggtataataaaattgtgatgagttgcgtaccggtggctcacccgggtcaggtcaggtcagggcaggcctcaaggctcagagag |
487 |
Q |
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| T |
51149607 |
tatcactacttgtttttgttataataaaatttggatgagttgcataccggtggctcacccg-----ggtcaggtcagggcaggcctcaaggctcagagag |
51149513 |
T |
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| Q |
488 |
cgctagcagaggatgatcctattactatttaatttacacacaccatgataaggacaaaagtgtctaccaatcttattttacaacaacaattgatgccaaa |
587 |
Q |
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| T |
51149512 |
cgctagcagaggatgatcctattactatttaatttacacacaccatgataaggacaaaagtgtataccaatcttattttacaacaacaattgatgccaaa |
51149413 |
T |
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| Q |
588 |
gggatctaagatgtagaagcacttgtgtgtaatgctactaaagaagcatagtcaccacccttatcgagcaatgcttcatgttttcctttctctgctatca |
687 |
Q |
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| T |
51149412 |
gggatctaagatgtagaatcacttgtatgtaatgctactaaagaagcatagtcaccacccttatggagcaatgcttcatgttttcctttctctgctatca |
51149313 |
T |
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| Q |
688 |
caccattcttaactactgctattaaatctgcac |
720 |
Q |
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| T |
51149312 |
caccattcttaactactgctattaaatctgcac |
51149280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 557 - 720
Target Start/End: Complemental strand, 51160306 - 51160143
Alignment:
| Q |
557 |
atcttattttacaacaacaattgatgccaaagggatctaagatgtagaagcacttgtgtgtaatgctactaaagaagcatagtcaccacccttatcgagc |
656 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||||||||||||||||| | || | |||||||||||||||||||||||| ||||||| |||| |
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| T |
51160306 |
atcttattttacaacaactattgatgcgaaagggatctaagatgtagaagcacttttatgcagtgctactaaagaagcatagtcaccgcccttatggagc |
51160207 |
T |
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| Q |
657 |
aatgcttcatgttttcctttctctgctatcacaccattcttaactactgctattaaatctgcac |
720 |
Q |
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| T |
51160206 |
aacgcttcatgttttcctttctctgctatcacaccattcttaactactgctattaaatctgcac |
51160143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 593 - 720
Target Start/End: Complemental strand, 51202969 - 51202842
Alignment:
| Q |
593 |
ctaagatgtagaagcacttgtgtgtaatgctactaaagaagcatagtcaccacccttatcgagcaatgcttcatgttttcctttctctgctatcacacca |
692 |
Q |
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| T |
51202969 |
ctaagatgtagaagcacttgtgtgtaatgctactaaagaagcatagtcaccacccttatggagcaatgcttcatgttttcctttctctgctatcacacca |
51202870 |
T |
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| Q |
693 |
ttcttaactactgctattaaatctgcac |
720 |
Q |
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| T |
51202869 |
ttcttaactactgctattaaatctgcac |
51202842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 589 - 720
Target Start/End: Original strand, 29933755 - 29933886
Alignment:
| Q |
589 |
ggatctaagatgtagaagcacttgtgtgtaatgctactaaagaagcatagtcaccacccttatcgagcaatgcttcatgttttcctttctctgctatcac |
688 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||| |
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| T |
29933755 |
ggatctaagatgtagaagcacttgtgtgtaatgctgctaaagaagcatagtcaccacccttatgtagcaatgcctcatgttttcctttctctgatatcac |
29933854 |
T |
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| Q |
689 |
accattcttaactactgctattaaatctgcac |
720 |
Q |
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| T |
29933855 |
accattcttaacgactgcaattaaatctgcac |
29933886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 610 - 720
Target Start/End: Complemental strand, 51216613 - 51216503
Alignment:
| Q |
610 |
ttgtgtgtaatgctactaaagaagcatagtcaccacccttatcgagcaatgcttcatgttttcctttctctgctatcacaccattcttaactactgctat |
709 |
Q |
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||||||| ||||||||||||||||||||| |||||||| | || |||| |||||||||||||||||| | ||||| ||||| ||||| ||||| || |
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| T |
51216613 |
ttgtgtgcaatgctactaaagaagcataggtgccacccttgttgatcaatatgtcatgttttcctttctcttcaatcactccatttttaacaactgcaat |
51216514 |
T |
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| Q |
710 |
taaatctgcac |
720 |
Q |
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| T |
51216513 |
tgaatttgcac |
51216503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 620 - 706
Target Start/End: Original strand, 49733899 - 49733985
Alignment:
| Q |
620 |
tgctactaaagaagcatagtcaccacccttatcgagcaatgcttcatgttttcctttctctgctatcacaccattcttaactactgc |
706 |
Q |
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||||||||||||||||||| ||||| ||| | |||||| | |||||| |||||||||||| | ||||| ||||| ||||| ||||| |
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| T |
49733899 |
tgctactaaagaagcataggtaccactcttgttgagcaacgtttcatgctttcctttctcttcaatcactccatttttaaccactgc |
49733985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 630 - 720
Target Start/End: Complemental strand, 36289263 - 36289173
Alignment:
| Q |
630 |
gaagcatagtcaccacccttatcgagcaatgcttcatgttttcctttctctgctatcacaccattcttaactactgctattaaatctgcac |
720 |
Q |
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| T |
36289263 |
gaagcatagtgacctcctttgttgatcaatgtttcatgatttcctttctctgtaatgaccccattcttcaccactgcaattaaatctgcac |
36289173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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