View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5378-Insertion-4 (Length: 441)
Name: NF5378-Insertion-4
Description: NF5378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5378-Insertion-4 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 8 - 441
Target Start/End: Original strand, 30202989 - 30203422
Alignment:
| Q |
8 |
gtccactttggatatcactaaaatttagcagcatgttcagcaaagacattgagttgaatgatgacgcaattgctattgcaaaaaccatgcctaagttacg |
107 |
Q |
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||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30202989 |
gtccacttttgatatcactaaaatttagcaggatgttctgcaaagacattgagttgaatgatgacgcaattgctattgcaaaaaccatgcctaagttacg |
30203088 |
T |
|
| Q |
108 |
ccatctttcgatgtttggaaacttactcactaatgtcggattgcatgccattcttgatggatgtccccttcttgaatctgttgtcctgcgaaattgtttc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30203089 |
ccatctttcgatgtttggaaacttactcactaatgtcggattgcatgccattcttgatggatgtccccttcttgaatctgttgtcctgcgaaattgtttc |
30203188 |
T |
|
| Q |
208 |
catcttgatttgagttgaagcttggggaaaaggtgtcgtgatcaaatcaaagacttggtacttccaactgatgtagatgaaaattgtgatgatgaagatt |
307 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30203189 |
catcttgatttgagtggaagcttggggaaaaggtgtcgtgatcaaatcaaagacttggtacttccaactgatgtagatgaaaattgtgatgatgaagatt |
30203288 |
T |
|
| Q |
308 |
atttttatttaagcagtctaatggaagatgaaatggatttggattatctattctttttaaatatgtatgacnnnnnnnnagatttacatgaaaatgataa |
407 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30203289 |
atttttatttgagcagtctaatggaagatgaaatggatttggattatctattctttttaaatatgtatgacttttttttagatttacatgaaaatgataa |
30203388 |
T |
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| Q |
408 |
ctagatggtgacaaatgttattgataatgttatt |
441 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
30203389 |
ctagatggtgacaaatgttattgataatgttatt |
30203422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 10 - 367
Target Start/End: Original strand, 30223843 - 30224203
Alignment:
| Q |
10 |
ccactttggatatcactaaaatttagcagcatgttcagcaaagacattgagttgaatgatgacgcaattgctattgcaaaaaccatgcctaagttacgcc |
109 |
Q |
| |
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||||||| || |||| ||||||||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| | |
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| T |
30223843 |
ccacttttgaaatcattaaaatttagcagaatgttcagtaaagacatcgagttgaatgatgacgcttttgctattgcaaaaaccatgcctaagctacgtc |
30223942 |
T |
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| Q |
110 |
atctttcgatgtttggaaacttactcactaatgtcggattgcatgccattcttgatggatgtccccttcttgaatctgttgtcctgcgaaattgtttcca |
209 |
Q |
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| T |
30223943 |
atctttcgatgtttggaaacttgcttactaatgtcgggttgcatgccattcttgatggttgcccccttcttgaatctcttgtcctgcgagattgtaatca |
30224042 |
T |
|
| Q |
210 |
tcttgatttgagttgaagcttggggaaaaggtgtcgtgatcaaatcaaagacttggtacttccaactgatgtagatgaaaattgtgatgatgaa------ |
303 |
Q |
| |
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||||||||||||| |||| || |||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||| |||||||||| |
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| T |
30224043 |
tcttgatttgagtggaagttttgggaaaaggtgtcgtgatcagatcaaagactttgtacttccaacttgtgtagatgaaaattctgatgatgaagatgac |
30224142 |
T |
|
| Q |
304 |
gattatttttatttaagcagtctaatggaagatgaaatggatttggattatctattctttttaa |
367 |
Q |
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|||| ||||||||| || ||||||||||||||| ||| ||||||||||| ||||| |||||| |
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| T |
30224143 |
gattctttttatttgagaagtctaatggaagatcaaa---atttggattatttattcattttaa |
30224203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 10 - 306
Target Start/End: Original strand, 30230839 - 30231141
Alignment:
| Q |
10 |
ccactttggatatcactaaaatttagcagcatgttcagcaaagacattgagttgaatgatgacgcaattgctattgcaaaaaccatgcctaagttacgcc |
109 |
Q |
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||||||| || |||| ||||||||||||| ||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
30230839 |
ccacttttgaaatcaataaaatttagcagaatgttcagcaaagacatcgagctgaatgatgacgcttttgctattgcaaaaaccatgactaagttacgcc |
30230938 |
T |
|
| Q |
110 |
atctttcgatgtttggaaacttactcactaatgtcggattgcatgccattcttgatggatgtccccttcttgaatctgttgtcctgcgaaattgtttcca |
209 |
Q |
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|||||||||||||||||||||| || |||||||| || |||||||||||||||||||| || ||||||||||||||| ||||||||||| ||||| | || |
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| T |
30230939 |
atctttcgatgtttggaaacttgcttactaatgttgggttgcatgccattcttgatggttgcccccttcttgaatctattgtcctgcgagattgtattca |
30231038 |
T |
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| Q |
210 |
tcttgatttgagttgaagcttggggaaaaggtgtcgtgatcaaatcaaagact------tggtacttccaactgatgtagatgaaaattgtgatgatgaa |
303 |
Q |
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||||||||||||| |||| ||||||||||||||| ||||||| |||||||||| | |||||||||||| ||||||||||||||| |||||||||| |
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| T |
30231039 |
tcttgatttgagtggaagtttggggaaaaggtgttgtgatcagatcaaagactttgtagttgtacttccaacttatgtagatgaaaattatgatgatgaa |
30231138 |
T |
|
| Q |
304 |
gat |
306 |
Q |
| |
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||| |
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| T |
30231139 |
gat |
30231141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 77 - 244
Target Start/End: Original strand, 30240123 - 30240290
Alignment:
| Q |
77 |
ttgctattgcaaaaaccatgcctaagttacgccatctttcgatgtttggaaacttactcactaatgtcggattgcatgccattcttgatggatgtcccct |
176 |
Q |
| |
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||||||||||||| |||||||||||| |||||| |||| ||| |||||||||| |||||||||||| || |||| | |||||||||||| ||| || || |
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| T |
30240123 |
ttgctattgcaaacaccatgcctaagctacgccttcttatgatttttggaaactcactcactaatgttgggttgctttccattcttgatgcatgccctct |
30240222 |
T |
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| Q |
177 |
tcttgaatctgttgtcctgcgaaattgtttccatcttgatttgagttgaagcttggggaaaaggtgtc |
244 |
Q |
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||||||| | ||| ||||| | ||| | |||||||||||||| |||| ||||| |||||||||| |
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| T |
30240223 |
tcttgaagatcttgatttgcgagaatgtcttaatcttgatttgagtggaagattgggtaaaaggtgtc |
30240290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 186
Target Start/End: Original strand, 29649622 - 29649743
Alignment:
| Q |
65 |
atgatgacgcaattgctattgcaaaaaccatgcctaagttacgccatctttcgatgtttggaaacttactcactaatgtcggattgcatgccattcttga |
164 |
Q |
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||||||| ||||||||| ||| |||||||||| ||||| |||| ||| || ||| | || ||| || |||||||||| ||||||| |||||||||||| |
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| T |
29649622 |
atgatgaggcaattgctgttggaaaaaccatgactaagctacgacatattaagatttatgaaaatttgctcactaatgatggattgcttgccattcttga |
29649721 |
T |
|
| Q |
165 |
tggatgtccccttcttgaatct |
186 |
Q |
| |
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||||| || || ||||||||| |
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| T |
29649722 |
tggatcccctctgcttgaatct |
29649743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 79 - 274
Target Start/End: Complemental strand, 16644095 - 16643900
Alignment:
| Q |
79 |
gctattgcaaaaaccatgcctaagttacgccatctttcgatgtttggaaacttactcactaatgtcggattgcatgccattcttgatggatgtccccttc |
178 |
Q |
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|||||||||||||||||||||||| | ||| ||||||| ||| |||||||| ||||||||||| | |||| || |||||||||| |||| || |||| |
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| T |
16644095 |
gctattgcaaaaaccatgcctaagcttcgctatctttcaatgattggaaacacactcactaatgatgagttgcttgtcattcttgatcgatgccctcttc |
16643996 |
T |
|
| Q |
179 |
ttgaatctgttgtcctgcgaaattgtttccatcttgatttgagttgaagcttggggaaaaggtgtcgtgatcaaatcaaagacttggtacttccaa |
274 |
Q |
| |
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| |||| | ||| ||| ||| |||||| | ||||||||||||| |||| | ||||||||| |||||||| |||||| ||||| ||||||||| |
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| T |
16643995 |
tcgaatatcttgacctcagaatttgttttcgtcttgatttgagtggaagtctcaagaaaaggtgccgtgatcagatcaaatacttgatacttccaa |
16643900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 79 - 274
Target Start/End: Complemental strand, 17618456 - 17618261
Alignment:
| Q |
79 |
gctattgcaaaaaccatgcctaagttacgccatctttcgatgtttggaaacttactcactaatgtcggattgcatgccattcttgatggatgtccccttc |
178 |
Q |
| |
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|||||||||||||||||||||||| | ||| ||||||| ||| |||||||| ||||||||||| | |||| || |||||||||| |||| || |||| |
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| T |
17618456 |
gctattgcaaaaaccatgcctaagcttcgctatctttcaatgattggaaacacactcactaatgatgagttgcttgtcattcttgatcgatgccctcttc |
17618357 |
T |
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| Q |
179 |
ttgaatctgttgtcctgcgaaattgtttccatcttgatttgagttgaagcttggggaaaaggtgtcgtgatcaaatcaaagacttggtacttccaa |
274 |
Q |
| |
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| |||| | ||| ||| ||| |||||| | ||||||||||||| |||| | ||||||||| |||||||| |||||| ||||| ||||||||| |
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| T |
17618356 |
tcgaatatcttgacctcagaatttgttttcgtcttgatttgagtggaagtctcaagaaaaggtgccgtgatcagatcaaatacttgatacttccaa |
17618261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 6046754 - 6046802
Alignment:
| Q |
65 |
atgatgacgcaattgctattgcaaaaaccatgcctaagttacgccatct |
113 |
Q |
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||||||| ||| || |||||||||||||||||||| |||||||||||| |
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| T |
6046754 |
atgatgaggcattttctattgcaaaaaccatgcctgggttacgccatct |
6046802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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