View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5378-Insertion-5 (Length: 410)
Name: NF5378-Insertion-5
Description: NF5378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5378-Insertion-5 |
 | |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 8 - 410
Target Start/End: Complemental strand, 8958281 - 8957879
Alignment:
| Q |
8 |
attatcaattatgtccgacgttgtcataattgccgaccgaatcgcggaagggctccaatcaccgtgtgctcctttcaaaagtgccgcgacacctgcaaca |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8958281 |
attatcaattatgtccgacgttgtcataattgccgaccgaatcgcggcagggctccaatcaccgtgtgctcctttcaaaagtgccgcgacacctgcaaca |
8958182 |
T |
|
| Q |
108 |
tgaggacatgccatagatgttccacttatcacattgaacttgttgaagatcttatgagtccccaaacccatcacaggaacatttgtgggccatgcagcta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8958181 |
tgaggacatgccatagatgttccacttatcacattgaacttgttgaagatcttatgagtccccaaacccatcacaggaacatttgtgggccatgcagcta |
8958082 |
T |
|
| Q |
208 |
agatatttgtaccaggagcagtgatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggttt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8958081 |
agatatttgtaccaggagcagtgatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggttt |
8957982 |
T |
|
| Q |
308 |
aattccaaaaactgttttcttgaaagacatgcttgcttttgaagtagagtttttagagttataactcttgatgtaagctttgactacttctccattgatt |
407 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8957981 |
aattccaaaaactgttttcatgaaagacatgcttgcttttgaagtagagtttttagagttataactcttgatgtaagctttgactacttctccattgatt |
8957882 |
T |
|
| Q |
408 |
gga |
410 |
Q |
| |
|
||| |
|
|
| T |
8957881 |
gga |
8957879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 9 - 358
Target Start/End: Complemental strand, 8963294 - 8962945
Alignment:
| Q |
9 |
ttatcaattatgtccgacgttgtcataattgccgaccgaatcgcggaagggctccaatcaccgtgtgctcctttcaaaagtgccgcgacacctgcaacat |
108 |
Q |
| |
|
||||||| |||||| || |||||||| |||||||||| ||| || | |||||||||||| | |||||||||||||||||||| | ||||| ||||||| |
|
|
| T |
8963294 |
ttatcaaatatgtctgatgttgtcatcattgccgacctaatagctgtcgggctccaatcagcatgtgctcctttcaaaagtgctcctacaccggcaacat |
8963195 |
T |
|
| Q |
109 |
gaggacatgccatagatgttccacttatcacattgaacttgttgaagatcttatgagtccccaaacccatcacaggaacatttgtgggccatgcagctaa |
208 |
Q |
| |
|
||||||||| ||||||||||||| ||| | |||||||||||||| || ||||||| ||| ||| ||| |||||||||||||| |||||||||||||| |
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|
| T |
8963194 |
gaggacatgacatagatgttccagttaaaaaattgaacttgttgacgactttatgagacccaaaatccaacacaggaacatttggaggccatgcagctaa |
8963095 |
T |
|
| Q |
209 |
gatatttgtaccaggagcagtgatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggttta |
308 |
Q |
| |
|
||| ||||| ||||| || |||||||||||||| | |||||||||||| ||||| |||||||| ||||||||| || || |||||| |||||||| |
|
|
| T |
8963094 |
gattgacgtaccgggagctgtaatgtcaggtttcaacacatatggacaactctttgatggccctctagaactataaaaatccaccctaggtactggttta |
8962995 |
T |
|
| Q |
309 |
attccaaaaactgttttcttgaaagacatgcttgcttttgaagtagagtt |
358 |
Q |
| |
|
|||||| ||| ||||||||||||| || || ||||| ||||||| |
|
|
| T |
8962994 |
gcaccaaaagatgtaatcttgaaagacattttttctattgaactagagtt |
8962945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 334
Target Start/End: Complemental strand, 8974691 - 8974365
Alignment:
| Q |
8 |
attatcaattatgtccgacgttgtcataattgccgaccgaatcgcggaagggctccaatcaccgtgtgctcctttcaaaagtgccgcgacacctgcaaca |
107 |
Q |
| |
|
|||||||| |||||| || |||||||| ||||| |||| ||| || | ||||||||||||| | ||||| ||||||||||||| | ||||| |||||| |
|
|
| T |
8974691 |
attatcaaatatgtctgatgttgtcatcattgctgacctaatagctgcagggctccaatcaacatgtgcagctttcaaaagtgctcctacaccagcaaca |
8974592 |
T |
|
| Q |
108 |
tgaggacatgccatagatgttccacttatcacattgaacttgttgaagatcttatgagtccccaaacccatcacaggaacatttgtgggccatgcagcta |
207 |
Q |
| |
|
|||||| ||| ||||||||||||||||| | ||||||||||||||||| ||| | | ||| || ||| |||||||| |||||| ||||||||||||| |
|
|
| T |
8974591 |
tgaggagatgacatagatgttccacttaaaaaattgaacttgttgaagactttacgtgacccaaactccaacacaggaatatttgtaggccatgcagcta |
8974492 |
T |
|
| Q |
208 |
agatatttgtaccaggagcagtgatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggttt |
307 |
Q |
| |
|
|||| |||||||||| | || |||||||||||||||| || ||| ||||| | ||||| ||||||||||||||| || || ||||| |||||||| |
|
|
| T |
8974491 |
agattgatgtaccaggacctgtaatgtcaggtttcaaaacatttgggcaactttcagaaggacctcttgaactataaaaatccacgctaggagctggttt |
8974392 |
T |
|
| Q |
308 |
aattccaaaaactgttttcttgaaaga |
334 |
Q |
| |
|
| |||||| |||| |||||||||| |
|
|
| T |
8974391 |
agcaccaaaagatgttatcttgaaaga |
8974365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 27 - 351
Target Start/End: Original strand, 8945808 - 8946129
Alignment:
| Q |
27 |
gttgtcataattgccgaccgaatcgcggaagggctccaatcaccgtgtgctcctttcaaaagtgccgcgacacctgcaacatgaggacatgccatagatg |
126 |
Q |
| |
|
||||||||||||||||||| || || | ||||||||||||| | | |||||||| |||||||| | ||||| |||||||||||||||| | |||||| |
|
|
| T |
8945808 |
gttgtcataattgccgaccttatagctgcagggctccaatcaacacgcgctccttttaaaagtgctcctacaccggcaacatgaggacatgacgtagatg |
8945907 |
T |
|
| Q |
127 |
ttccacttatcacattgaacttgttgaagatcttatgagtccccaaacccatcacaggaacatttgtgggccatgcagctaagatatttgtaccaggagc |
226 |
Q |
| |
|
||||| ||| | |||||||||||||||| ||| | || | | ||| |||||||| ||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
8945908 |
ttccagttaaaaatttgaacttgttgaaga-cttcgg--tcacaggatccaacacaggaagttttgtgggccatgcagctaagattgatgtatcaggagc |
8946004 |
T |
|
| Q |
227 |
agtgatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttc |
326 |
Q |
| |
|
|| |||||||||||||| | |||||||||||||||||| || ||||| |||||| |||| |||||| ||||||||||||| ||||||||| || | | |
|
|
| T |
8946005 |
cgtaatgtcaggtttcaagacatatggacaactatttgatggtcctctcgaactagaagagtaaacaccaggtgctggtttagttccaaaaattgataac |
8946104 |
T |
|
| Q |
327 |
ttgaaagacatgcttgcttttgaag |
351 |
Q |
| |
|
||||||||||| ||||| |||||| |
|
|
| T |
8946105 |
ttgaaagacatatttgctattgaag |
8946129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 9948279 - 9948383
Alignment:
| Q |
27 |
gttgtcataattgccgaccgaatcgcggaagggctccaatcaccgtgtgctcctttcaaaagtgccgcgacacctgcaacatgaggacatgccatagatg |
126 |
Q |
| |
|
|||||||||||||| |||| || || | |||| |||||||| | |||||||||||||||||||| | ||||| ||||||||||| |||| |||| | | |
|
|
| T |
9948279 |
gttgtcataattgctgaccttatagctgcaggg-tccaatcagcatgtgctcctttcaaaagtgctccaacaccagcaacatgagggcatgtcataaacg |
9948377 |
T |
|
| Q |
127 |
ttccac |
132 |
Q |
| |
|
|||||| |
|
|
| T |
9948378 |
ttccac |
9948383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 7 - 358
Target Start/End: Original strand, 34962568 - 34962919
Alignment:
| Q |
7 |
aattatcaattatgtccgacgttgtcataattgccgaccgaatcgcggaagggctccaatcaccgtgtgctcctttcaaaagtgccgcgacacctgcaac |
106 |
Q |
| |
|
||||||||| |||||| || |||||||| |||||||||||||| || | ||||||||||||| || ||||||||||||| ||||||||||||||||| |
|
|
| T |
34962568 |
aattatcaaatatgtctgatgttgtcattattgccgaccgaattgctgctgggctccaatcactatgcactcctttcaaaagcgccgcgacacctgcaac |
34962667 |
T |
|
| Q |
107 |
atgaggacatgccatagatgttccacttatcacattgaacttgttgaagatcttatgagtccccaaacccatcacaggaacatttgtgggccatgcagct |
206 |
Q |
| |
|
|||||| || |||||||||||||||||||||| |||||| ||| |||| || ||||||| | | || ||||||||||||||||||| |||||||| ||| |
|
|
| T |
34962668 |
atgagggcacgccatagatgttccacttatcaaattgaatttgctgaaaattttatgagactcaaattccatcacaggaacatttgtaggccatgccgct |
34962767 |
T |
|
| Q |
207 |
aagatatttgtaccaggagcagtgatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtt |
306 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||||| | | |||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
34962768 |
aagatcgaagtaccaggcgcagtaatgtcaggtttcaacacaaatggacaactatatgatggccctcttgaactatatgaatcaacactaggtgctggtt |
34962867 |
T |
|
| Q |
307 |
taattccaaaaactgttttcttgaaagacatgcttgcttttgaagtagagtt |
358 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
34962868 |
tagttccaaaaactgttttcatgaaagacatgcttgcaattgaagtagagtt |
34962919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 6e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 15 - 343
Target Start/End: Original strand, 19375670 - 19375998
Alignment:
| Q |
15 |
attatgtccgacgttgtcataattgccgaccgaatcgcggaagggctccaatcaccgtgtgctcctttcaaaagtgccgcgacacctgcaacatgaggac |
114 |
Q |
| |
|
|||||||| || ||||||||||| || || ||||| || | || ||||||||| | |||||||||||||||||| || | ||||||||| ||||||| |
|
|
| T |
19375670 |
attatgtctgatgttgtcataatcgcagaacgaattgctgtcggactccaatcaacatgtgctcctttcaaaagtaatgctatacctgcaacgtgaggac |
19375769 |
T |
|
| Q |
115 |
atgccatagatgttccacttatcacattgaacttgttgaagatcttatgagtccccaaacccatcacaggaacatttgtgggccatgcagctaagatatt |
214 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||| ||| |||| |||||||||| ||||||||||||||||| |
|
|
| T |
19375770 |
atgccatagatgttccacttatcaaattgaacttgttgaagactttaaaagtccccaaatccaacacatgaacatttgttggccatgcagctaagattga |
19375869 |
T |
|
| Q |
215 |
tgtaccaggagcagtgatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattcca |
314 |
Q |
| |
|
||||||| ||||||||||||| |||||||| | | |||||||| |||||||||||||||||||||||||| | ||||||||||| |||||||| ||| |
|
|
| T |
19375870 |
tgtaccaagagcagtgatgtcgggtttcaacacaaatggacaattatttgaaggccctcttgaactataaagatcaacactaggtgttggtttaacacca |
19375969 |
T |
|
| Q |
315 |
aaaactgttttcttgaaagacatgcttgc |
343 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
|
|
| T |
19375970 |
aaaattgttttcttgaaagacatgcttgc |
19375998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 17 - 403
Target Start/End: Original strand, 21686961 - 21687341
Alignment:
| Q |
17 |
tatgtccgacgttgtcataattgccgaccgaatcgcggaagggctccaatcaccgtgtgctcctttcaaaagtgccgcgacacctgcaacatgaggacat |
116 |
Q |
| |
|
|||||| || ||||||||||||||||||| ||| | || ||||||||| || |||||| ||||| ||||| || || |||||||||||||| |||||| |
|
|
| T |
21686961 |
tatgtctgatgttgtcataattgccgacctaatagatgacgggctccaaccattgtgtgccccttttaaaagcgctgctacacctgcaacatgtggacat |
21687060 |
T |
|
| Q |
117 |
gccatagatgttccacttatcacattgaacttgttgaagatcttatgagtccccaaacccatcacaggaacatttgtgggccatgcagctaagatatttg |
216 |
Q |
| |
|
| ||||||||||||| ||||| |||||| ||||| |||| ||| |||||| ||| ||||||||| ||||||||||||||||||||||| || |
|
|
| T |
21687061 |
gacatagatgttccatctatcaaattgaagttgttaaaga-cttc--agtcccaaaattggacacaggaacgtttgtgggccatgcagctaagattgatg |
21687157 |
T |
|
| Q |
217 |
taccaggagcagtgatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||| || || ||||| |||||| || |||||||||| || ||||| || || |
|
|
| T |
21687158 |
taccaggagcagtgatgtcaggtttcaacacatatggacaactatttgatggtccccttgagctataaaaatccacactaggtgttgatttaacaccgaa |
21687257 |
T |
|
| Q |
317 |
aactgttttcttgaaagacatgcttgcttttgaagtagagtttttagagttataactcttgatgtaagctttgactacttctccatt |
403 |
Q |
| |
|
| |||||||||||||||||||| ||||| ||||| ||| | |||||||||| |||||||||||||||||| || | ||||||||| |
|
|
| T |
21687258 |
agctgttttcttgaaagacatgtttgctattgaactagcg---ttagagttatgactcttgatgtaagctttcacaatttctccatt |
21687341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 49008369 - 49008292
Alignment:
| Q |
79 |
ctttcaaaagtgccgcgacacctgcaacatgaggacatgccatagatgttccacttatcacattgaacttgttgaaga |
156 |
Q |
| |
|
|||| |||||||| || ||||||||||| || ||||||| ||| ||||||||||||| || ||||| |||||||||| |
|
|
| T |
49008369 |
cttttaaaagtgctgctacacctgcaacgtgtggacatgacattgatgttccacttaacaagttgaagttgttgaaga |
49008292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 49008250 - 49008161
Alignment:
| Q |
195 |
ggccatgcagctaagatatttgtaccaggagcagtgatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataa |
284 |
Q |
| |
|
||||||| ||||||||| ||| || || || |||||||| |||||||| | | |||||||||||| ||| ||||||||||| |||||| |
|
|
| T |
49008250 |
ggccatgaagctaagattagtgttcctggtgctgtgatgtctggtttcaatacaaatggacaactatgtgatggccctcttgagctataa |
49008161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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