View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5378-Insertion-6 (Length: 343)

Name: NF5378-Insertion-6
Description: NF5378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5378-Insertion-6
NF5378-Insertion-6
[»] chr7 (1 HSPs)
chr7 (8-341)||(45679386-45679719)
[»] chr4 (1 HSPs)
chr4 (101-184)||(10452359-10452442)
[»] chr5 (2 HSPs)
chr5 (100-190)||(36522282-36522372)
chr5 (118-179)||(18091074-18091135)
[»] chr3 (3 HSPs)
chr3 (103-160)||(25991456-25991513)
chr3 (114-162)||(3384325-3384373)
chr3 (100-160)||(2417742-2417802)
[»] chr2 (3 HSPs)
chr2 (100-180)||(2323649-2323728)
chr2 (100-180)||(2336657-2336737)
chr2 (114-180)||(30323497-30323563)
[»] scaffold0113 (1 HSPs)
scaffold0113 (100-190)||(39861-39951)
[»] chr8 (6 HSPs)
chr8 (78-158)||(5870399-5870479)
chr8 (106-162)||(5974596-5974652)
chr8 (99-159)||(34835263-34835323)
chr8 (99-159)||(34835529-34835589)
chr8 (99-159)||(34835795-34835855)
chr8 (100-180)||(40991786-40991866)


Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 8 - 341
Target Start/End: Original strand, 45679386 - 45679719
Alignment:
Q  8 gttggtggcactcaacgggacgtgtcacctaaacaccttggtcagaaagactttcttcacattaagctttgaataatcatataaatgaatttgacaccac 107  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45679386 gttggtggccctcaacgggacgtgtcacctaaacaccttggtcagaaagactttcttcacattaagctttgaataatcatataaatgaatttgacaccac 45679485  T
Q  108 attataacccaaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccatttttccatccaatgtagccttttactcacact 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  45679486 attataacccaaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccattttttcatccaatgtagacttttactcacact 45679585  T
Q  208 tgatatcaacatgtatttatggacaacattaaactgtgttttttatgtctaaatatgaagcggttttggggtgagaagtgtcatctcaaacaaagaacgg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45679586 tgatatcaacatgtatttatggacaacattaaactgtgttttttatgtctaaatatgaagcggttttggggtgagaagtgtcatctcaaacaaagaacgg 45679685  T
Q  308 tctaattaaatcgtttgtaaggtttggctcacca 341  Q
    ||||||||||||||||||||||||||||||||||    
T  45679686 tctaattaaatcgtttgtaaggtttggctcacca 45679719  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 184
Target Start/End: Original strand, 10452359 - 10452442
Alignment:
Q  101 acaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccatttttccatc 184  Q
    |||||||||| ||||  |||||||||||| || |||||||| |||||||||  ||||| ||| |  ||||||||||||||||||    
T  10452359 acaccacattttaactaaaaactttaaggcatgaagtttatgggtcctctcttttatatagtgttaaacatccatttttccatc 10452442  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 190
Target Start/End: Original strand, 36522282 - 36522372
Alignment:
Q  100 gacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccatttttccatccaatgt 190  Q
    ||||||||| | | ||||||||| ||||| || |  |||||| |||||||||||||||||| | | |||| |||||||||| |||||||||    
T  36522282 gacaccacactcttacccaaaaccttaagataatgggtttattggtcctctcacttataaaatgttcaacttccatttttctatccaatgt 36522372  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 18091135 - 18091074
Alignment:
Q  118 aaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccattttt 179  Q
    ||||| ||||| ||||| ||||||||||| |||||| |||||| ||| |||||| |||||||    
T  18091135 aaaaccttaagatattaggtttataggtcatctcacatataaaatattcaacattcattttt 18091074  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 25991513 - 25991456
Alignment:
Q  103 accacattataacccaaaactttaaggtattaagtttataggtcctctcacttataaa 160  Q
    |||||| | ||||||||||| |||||| |||| |||||||||| ||||||||||||||    
T  25991513 accacactttaacccaaaaccttaaggcattaggtttataggttctctcacttataaa 25991456  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 3384325 - 3384373
Alignment:
Q  114 acccaaaactttaaggtattaagtttataggtcctctcacttataaagt 162  Q
    |||||||||||||||| ||||||||||| ||||||||  ||||||||||    
T  3384325 acccaaaactttaaggcattaagtttatgggtcctcttccttataaagt 3384373  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 2417802 - 2417742
Alignment:
Q  100 gacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataaa 160  Q
    ||||||||| | ||| |||||||| ||| | ||| ||||||||| ||||||||||||||||    
T  2417802 gacaccacaatttaatccaaaactctaaagcattgagtttatagatcctctcacttataaa 2417742  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 2323728 - 2323649
Alignment:
Q  100 gacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccatttttc 180  Q
    ||||||||||  ||||| ||||| |||||| |||  |||||| | |||||||||||||||||| |||||| ||||||||||    
T  2323728 gacaccacatcttaacctaaaaccttaaggcattg-gtttatggatcctctcacttataaagtgtccaacctccatttttc 2323649  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 2336737 - 2336657
Alignment:
Q  100 gacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccatttttc 180  Q
    ||||||||||  ||||||||||  |||||| ||| | ||||| |||||||||||||||||||| | |||| |||| |||||    
T  2336737 gacaccacatcttaacccaaaatcttaaggcattgaatttatgggtcctctcacttataaagtgttcaacctccacttttc 2336657  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 30323563 - 30323497
Alignment:
Q  114 acccaaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccatttttc 180  Q
    ||||||||| |||||| | | ||||||||||||||||||||| |||||| | |||| |||| |||||    
T  30323563 acccaaaaccttaaggcaatgagtttataggtcctctcacttctaaagtgttcaacctccaattttc 30323497  T

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Target: scaffold0113 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 190
Target Start/End: Complemental strand, 39951 - 39861
Alignment:
Q  100 gacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccatttttccatccaatgt 190  Q
    ||||||||||| | | |||||| ||||||||| ||||||||||  || ||||||||||||||  ||||||  ||| ||||| |||| ||||    
T  39951 gacaccacatttttaaccaaaattttaaggtaataagtttatatctcatctcacttataaagagtccaaccaccacttttctatccgatgt 39861  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 5870479 - 5870399
Alignment:
Q  78 gaataatcatataaatgaatttgacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttata 158  Q
    ||||||||| | |||| | || || ||||||| ||||| ||||| |||||| |||| ||||||| ||| ||||||||||||    
T  5870479 gaataatcacacaaataagttggataccacatcataactcaaaattttaagatattgagtttatgggttctctcacttata 5870399  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 5974652 - 5974596
Alignment:
Q  106 acattataacccaaaactttaaggtattaagtttataggtcctctcacttataaagt 162  Q
    ||||| ||||| ||||| |||||  |||| ||||||||||| |||||||||||||||    
T  5974652 acattttaaccaaaaacattaagacattaggtttataggtcatctcacttataaagt 5974596  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 34835323 - 34835263
Alignment:
Q  99 tgacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataa 159  Q
    |||||||||| | | |||||||||||||||| | | ||||||| |||||||| ||||||||    
T  34835323 tgacaccacactcttacccaaaactttaaggcaatgagtttatgggtcctcttacttataa 34835263  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 34835589 - 34835529
Alignment:
Q  99 tgacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataa 159  Q
    |||||||||| | | |||||||||||||||| | | ||||||| |||||||| ||||||||    
T  34835589 tgacaccacactcttacccaaaactttaaggcaatgagtttatgggtcctcttacttataa 34835529  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 34835855 - 34835795
Alignment:
Q  99 tgacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataa 159  Q
    |||||||||| | | |||||||||||||||| | | ||||||| |||||||| ||||||||    
T  34835855 tgacaccacactcttacccaaaactttaaggcaatgagtttatgggtcctcttacttataa 34835795  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 40991866 - 40991786
Alignment:
Q  100 gacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccatttttc 180  Q
    ||||||||||  ||||||||||| || ||| |||  |||||| ||||||||||||||| |||| | |||| |||| |||||    
T  40991866 gacaccacatcttaacccaaaaccttgaggcattgggtttatgggtcctctcacttatgaagtgttcaacctccacttttc 40991786  T

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